FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4349, 364 aa 1>>>pF1KE4349 364 - 364 aa - 364 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.6917+/-0.000447; mu= -9.0323+/- 0.028 mean_var=274.2677+/-55.526, 0's: 0 Z-trim(118.3): 39 B-trim: 1325 in 2/58 Lambda= 0.077444 statistics sampled from 31112 (31151) to 31112 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.365), width: 16 Scan time: 7.460 The best scores are: opt bits E(85289) NP_001166864 (OMIM: 147050,606518) hepatitis A vir ( 364) 2335 274.2 3.4e-73 NP_036338 (OMIM: 147050,606518) hepatitis A virus ( 364) 2335 274.2 3.4e-73 NP_001295085 (OMIM: 147050,606518) hepatitis A vir ( 401) 2057 243.1 8.1e-64 XP_016864829 (OMIM: 147050,606518) PREDICTED: hepa ( 352) 2050 242.3 1.3e-63 XP_016864828 (OMIM: 147050,606518) PREDICTED: hepa ( 400) 2040 241.2 3e-63 XP_011532817 (OMIM: 147050,606518) PREDICTED: hepa ( 244) 1010 126.0 8.8e-29 NP_001140198 (OMIM: 610096) T-cell immunoglobulin ( 350) 451 63.6 7.5e-10 XP_016865510 (OMIM: 610096) PREDICTED: T-cell immu ( 323) 449 63.4 8.2e-10 XP_011532996 (OMIM: 610096) PREDICTED: T-cell immu ( 299) 444 62.8 1.1e-09 NP_612388 (OMIM: 610096) T-cell immunoglobulin and ( 378) 444 62.9 1.4e-09 NP_116171 (OMIM: 606652) hepatitis A virus cellula ( 301) 344 51.7 2.6e-06 >>NP_001166864 (OMIM: 147050,606518) hepatitis A virus c (364 aa) initn: 2335 init1: 2335 opt: 2335 Z-score: 1435.2 bits: 274.2 E(85289): 3.4e-73 Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364) 10 20 30 40 50 60 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL 310 320 330 340 350 360 pF1KE4 YATD :::: NP_001 YATD >>NP_036338 (OMIM: 147050,606518) hepatitis A virus cell (364 aa) initn: 2335 init1: 2335 opt: 2335 Z-score: 1435.2 bits: 274.2 E(85289): 3.4e-73 Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364) 10 20 30 40 50 60 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL 310 320 330 340 350 360 pF1KE4 YATD :::: NP_036 YATD >>NP_001295085 (OMIM: 147050,606518) hepatitis A virus c (401 aa) initn: 2052 init1: 2052 opt: 2057 Z-score: 1266.7 bits: 243.1 E(85289): 8.1e-64 Smith-Waterman score: 2057; 94.7% identity (97.3% similar) in 339 aa overlap (1-336:1-339) 10 20 30 40 50 60 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 CISVLVLLALLGVIIAKKYF---FKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIE ::::::::::::::::: . :: .. ..... .: : NP_001 CISVLVLLALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLRIVFMPRTKTQWCSL 310 320 330 340 350 360 360 pF1KE4 NSLYATD NP_001 RVYAHECRRLNRHQHIRRLLDPKTIFLFQFHLAFQHVSDTG 370 380 390 400 >>XP_016864829 (OMIM: 147050,606518) PREDICTED: hepatiti (352 aa) initn: 2050 init1: 2050 opt: 2050 Z-score: 1263.3 bits: 242.3 E(85289): 1.3e-63 Smith-Waterman score: 2050; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317) 10 20 30 40 50 60 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL ::::::::::::::::: XP_016 CISVLVLLALLGVIIAKSTLEMLGKKLDLVHRWRNELHTQGLLCCPRWSTVA 310 320 330 340 350 >>XP_016864828 (OMIM: 147050,606518) PREDICTED: hepatiti (400 aa) initn: 1465 init1: 1465 opt: 2040 Z-score: 1256.4 bits: 241.2 E(85289): 3e-63 Smith-Waterman score: 2040; 94.4% identity (97.1% similar) in 339 aa overlap (1-336:1-338) 10 20 30 40 50 60 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: XP_016 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEP-ATSPSSPQPAETHPT 190 200 210 220 230 250 260 270 280 290 300 pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV 240 250 260 270 280 290 310 320 330 340 350 pF1KE4 CISVLVLLALLGVIIAKKYF---FKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIE ::::::::::::::::: . :: .. ..... .: : XP_016 CISVLVLLALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLRIVFMPRTKTQWCSL 300 310 320 330 340 350 360 pF1KE4 NSLYATD XP_016 RVYAHECRRLNRHQHIRRLLDPKTIFLFQFHLAFQHVSDTG 360 370 380 390 400 >>XP_011532817 (OMIM: 147050,606518) PREDICTED: hepatiti (244 aa) initn: 1005 init1: 1005 opt: 1010 Z-score: 637.7 bits: 126.0 E(85289): 8.8e-29 Smith-Waterman score: 1010; 90.1% identity (95.1% similar) in 182 aa overlap (158-336:1-182) 130 140 150 160 170 180 pF1KE4 KVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLTTMTVSTT :::::::::::::::::::::::::::::: XP_011 MTTVPTTTVPTTMSIPTTTTVLTTMTVSTT 10 20 30 190 200 210 220 230 240 pF1KE4 TSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPTTLQGAIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPTTLQGAIR 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE4 REPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGVCISVLVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 REPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGVCISVLVL 100 110 120 130 140 150 310 320 330 340 350 360 pF1KE4 LALLGVIIAKKYF---FKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSLYATD :::::::::: . :: .. ..... .: : XP_011 LALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLRIVFMPRTKTQWCSLRVYAHEC 160 170 180 190 200 210 XP_011 RRLNRHQHIRRLLDPKTIFLFQFHLAFQHVSDTG 220 230 240 >>NP_001140198 (OMIM: 610096) T-cell immunoglobulin and (350 aa) initn: 383 init1: 345 opt: 451 Z-score: 297.8 bits: 63.6 E(85289): 7.5e-10 Smith-Waterman score: 460; 32.9% identity (57.8% similar) in 334 aa overlap (29-355:33-348) 10 20 30 40 50 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF : ::::: ::. .::::.. .: NP_001 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND :..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: ::::: NP_001 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP-- .::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... : NP_001 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPM--PLPRQNHEPVATSPSS :: : : :... :.. : :. .: .: . : : :. . : : : : NP_001 TTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSW 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 PQPAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTAN . : :. . . :. : . :: : . ::. . .... . . :. NP_001 SSVESTSADTVLLTSKASDTAVPEQNKTTK-----TGQMDGIPMSMKNEMPISQLLMIIA 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 TTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAE . :. : ....: . : : .. . : .:... .. : : . : :.. . : NP_001 PSLGF---VLFALFVAFLLRGKLM-ETYCSQKHTRLDYIGDS----KNVLNDVQHGREDE 300 310 320 330 340 360 pF1KE4 DNIYIENSLYATD :... NP_001 DGLFTL 350 >>XP_016865510 (OMIM: 610096) PREDICTED: T-cell immunogl (323 aa) initn: 441 init1: 345 opt: 449 Z-score: 297.1 bits: 63.4 E(85289): 8.2e-10 Smith-Waterman score: 464; 40.2% identity (63.3% similar) in 229 aa overlap (29-252:33-250) 10 20 30 40 50 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF : ::::: ::. .::::.. .: XP_016 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND :..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: ::::: XP_016 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP-- .::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... : XP_016 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQ :: : : :... :.. : :. : ...: .: .. : : ... :. :. :. XP_016 TTGTPLQMTTIAVFTTANTCLSL-TPSTLPEEAT--GLLTPEP---SKEGPILTAASDTA 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 PAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTT : . :: : . : : XP_016 VPEQNKTTKTGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCS 240 250 260 270 280 290 >>XP_011532996 (OMIM: 610096) PREDICTED: T-cell immunogl (299 aa) initn: 357 init1: 357 opt: 444 Z-score: 294.6 bits: 62.8 E(85289): 1.1e-09 Smith-Waterman score: 446; 38.6% identity (60.2% similar) in 254 aa overlap (29-275:33-259) 10 20 30 40 50 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF : ::::: ::. .::::.. .: XP_011 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND :..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: ::::: XP_011 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTT .::.: :.. ..:: .:: :: ::.:: :::: :::.:. ..:: XP_011 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPA-------ALPT- 130 140 150 160 180 190 200 210 220 230 pF1KE4 TTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVP--PMPLPRQNHEPVATSPSSPQ ::.:: ..: : . :: . : ::..: . : ::.. ::. .:. XP_011 -TVVTTPDLTTGTPLQMTT-------IAVFTTANTCLSLTPSTLPEE-----ATGLLTPE 170 180 190 200 210 240 250 260 270 280 290 pF1KE4 PAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESS--DGLWNNNQTQLFLEHSLLTAN :.. : . :..: : . . ::: .: . .:. XP_011 PSKEGPILTAESETVLPSDS-WSSVESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSV 220 230 240 250 260 270 300 310 320 330 340 350 pF1KE4 TTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAE XP_011 SSPQPGEMSSHHVAQAGLKSLGLK 280 290 >>NP_612388 (OMIM: 610096) T-cell immunoglobulin and muc (378 aa) initn: 357 init1: 357 opt: 444 Z-score: 293.1 bits: 62.9 E(85289): 1.4e-09 Smith-Waterman score: 446; 38.6% identity (60.2% similar) in 254 aa overlap (29-275:33-259) 10 20 30 40 50 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF : ::::: ::. .::::.. .: NP_612 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND :..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: ::::: NP_612 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTT .::.: :.. ..:: .:: :: ::.:: :::: :::.:. ..:: NP_612 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPA-------ALPT- 130 140 150 160 180 190 200 210 220 230 pF1KE4 TTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVP--PMPLPRQNHEPVATSPSSPQ ::.:: ..: : . :: . : ::..: . : ::.. ::. .:. NP_612 -TVVTTPDLTTGTPLQMTT-------IAVFTTANTCLSLTPSTLPEE-----ATGLLTPE 170 180 190 200 210 240 250 260 270 280 290 pF1KE4 PAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESS--DGLWNNNQTQLFLEHSLLTAN :.. : . :..: : . . ::: .: . .:. NP_612 PSKEGPILTAESETVLPSDS-WSSVESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSV 220 230 240 250 260 270 300 310 320 330 340 350 pF1KE4 TTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAE NP_612 SSPQPGASDTAVPEQNKTTKTGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFL 280 290 300 310 320 330 364 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:09:00 2016 done: Sun Nov 6 02:09:01 2016 Total Scan time: 7.460 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]