FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4349, 364 aa 1>>>pF1KE4349 364 - 364 aa - 364 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.6383+/-0.00106; mu= -3.1495+/- 0.064 mean_var=233.8446+/-46.680, 0's: 0 Z-trim(110.3): 37 B-trim: 2 in 1/54 Lambda= 0.083871 statistics sampled from 11466 (11491) to 11466 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.353), width: 16 Scan time: 2.450 The best scores are: opt bits E(32554) CCDS43392.1 HAVCR1 gene_id:26762|Hs108|chr5 ( 364) 2335 295.4 5.2e-80 CCDS78076.1 HAVCR1 gene_id:26762|Hs108|chr5 ( 401) 2057 261.8 7.5e-70 CCDS54943.1 TIMD4 gene_id:91937|Hs108|chr5 ( 350) 451 67.4 2.1e-11 CCDS4332.1 TIMD4 gene_id:91937|Hs108|chr5 ( 378) 444 66.6 4e-11 >>CCDS43392.1 HAVCR1 gene_id:26762|Hs108|chr5 (364 aa) initn: 2335 init1: 2335 opt: 2335 Z-score: 1550.0 bits: 295.4 E(32554): 5.2e-80 Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364) 10 20 30 40 50 60 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL 310 320 330 340 350 360 pF1KE4 YATD :::: CCDS43 YATD >>CCDS78076.1 HAVCR1 gene_id:26762|Hs108|chr5 (401 aa) initn: 2052 init1: 2052 opt: 2057 Z-score: 1367.5 bits: 261.8 E(32554): 7.5e-70 Smith-Waterman score: 2057; 94.7% identity (97.3% similar) in 339 aa overlap (1-336:1-339) 10 20 30 40 50 60 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 CISVLVLLALLGVIIAKKYF---FKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIE ::::::::::::::::: . :: .. ..... .: : CCDS78 CISVLVLLALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLRIVFMPRTKTQWCSL 310 320 330 340 350 360 360 pF1KE4 NSLYATD CCDS78 RVYAHECRRLNRHQHIRRLLDPKTIFLFQFHLAFQHVSDTG 370 380 390 400 >>CCDS54943.1 TIMD4 gene_id:91937|Hs108|chr5 (350 aa) initn: 383 init1: 345 opt: 451 Z-score: 318.2 bits: 67.4 E(32554): 2.1e-11 Smith-Waterman score: 460; 32.9% identity (57.8% similar) in 334 aa overlap (29-355:33-348) 10 20 30 40 50 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF : ::::: ::. .::::.. .: CCDS54 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND :..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: ::::: CCDS54 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP-- .::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... : CCDS54 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPM--PLPRQNHEPVATSPSS :: : : :... :.. : :. .: .: . : : :. . : : : : CCDS54 TTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSW 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 PQPAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTAN . : :. . . :. : . :: : . ::. . .... . . :. CCDS54 SSVESTSADTVLLTSKASDTAVPEQNKTTK-----TGQMDGIPMSMKNEMPISQLLMIIA 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 TTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAE . :. : ....: . : : .. . : .:... .. : : . : :.. . : CCDS54 PSLGF---VLFALFVAFLLRGKLM-ETYCSQKHTRLDYIGDS----KNVLNDVQHGREDE 300 310 320 330 340 360 pF1KE4 DNIYIENSLYATD :... CCDS54 DGLFTL 350 >>CCDS4332.1 TIMD4 gene_id:91937|Hs108|chr5 (378 aa) initn: 357 init1: 357 opt: 444 Z-score: 313.1 bits: 66.6 E(32554): 4e-11 Smith-Waterman score: 446; 38.6% identity (60.2% similar) in 254 aa overlap (29-275:33-259) 10 20 30 40 50 pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF : ::::: ::. .::::.. .: CCDS43 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND :..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: ::::: CCDS43 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTT .::.: :.. ..:: .:: :: ::.:: :::: :::.:. ..:: CCDS43 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPA-------ALPT- 130 140 150 160 180 190 200 210 220 230 pF1KE4 TTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVP--PMPLPRQNHEPVATSPSSPQ ::.:: ..: : . :: . : ::..: . : ::.. ::. .:. CCDS43 -TVVTTPDLTTGTPLQMTT-------IAVFTTANTCLSLTPSTLPEE-----ATGLLTPE 170 180 190 200 210 240 250 260 270 280 290 pF1KE4 PAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESS--DGLWNNNQTQLFLEHSLLTAN :.. : . :..: : . . ::: .: . .:. CCDS43 PSKEGPILTAESETVLPSDS-WSSVESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSV 220 230 240 250 260 270 300 310 320 330 340 350 pF1KE4 TTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAE CCDS43 SSPQPGASDTAVPEQNKTTKTGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFL 280 290 300 310 320 330 364 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:08:59 2016 done: Sun Nov 6 02:09:00 2016 Total Scan time: 2.450 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]