(Circular) (Six-base) MAPSORT of: pFN21AE0639.seq Check: 1566 from: 1 to: 5347 pFN21AE0639 5347 bp With 182 enzymes: SgfI * October 20, 2009 10:50 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3157 278 Size: 53 83 186 936 1621 2468 Fragments arranged by size: 2468 1621 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2690 1937 Size: 753 4594 Acc65I G'GTAC_C Cuts at: 2668 2668 Size: 5347 AclI AA'CG_TT Cuts at: 1563 3474 3847 1563 Size: 1911 373 3063 Fragments arranged by size: 3063 1911 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2438 3410 4794 5062 1632 Size: 806 972 1384 268 1917 Fragments arranged by size: 1917 1384 972 806 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5150 AflIII A'CryG_T Cuts at: 1203 2493 4246 5223 1203 Size: 1290 1753 977 1327 Fragments arranged by size: 1753 1327 1290 977 AgeI A'CCGG_T Cuts at: 4178 4178 Size: 5347 AhdI GACnn_n'nnGTC Cuts at: 2593 4076 2593 Size: 1483 3864 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5347 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2345 1184 Size: 1161 4186 AlwNI CAG_nnn'CTG Cuts at: 3090 4662 3090 Size: 1572 3775 ApaI G_GGCC'C Cuts at: 2016 2016 Size: 5347 ApaLI G'TGCA_C Cuts at: 3404 4560 3404 Size: 1156 4191 ApoI r'AATT_y Cuts at: 1493 2656 2882 3034 5143 1493 Size: 1163 226 152 2109 1697 Fragments arranged by size: 2109 1697 1163 226 152 AseI AT'TA_AT Cuts at: 160 1032 3901 160 Size: 872 2869 1606 Fragments arranged by size: 2869 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5347 AvaI C'yCGr_G Cuts at: 1870 1943 2549 2672 1870 Size: 73 606 123 4545 Fragments arranged by size: 4545 606 123 73 BamHI G'GATC_C Cuts at: 2677 3044 2677 Size: 367 4980 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2668 4123 618 Size: 325 217 627 881 1455 1842 Fragments arranged by size: 1842 1455 881 627 325 217 BanII G_rGCy'C Cuts at: 1391 2016 2444 2666 1391 Size: 625 428 222 4072 Fragments arranged by size: 4072 625 428 222 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2344 928 Size: 971 445 3931 Fragments arranged by size: 3931 971 445 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3538 3572 1903 Size: 34 1601 34 3678 Fragments arranged by size: 3678 1601 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3239 4449 3239 Size: 1210 4137 BclI T'GATC_A Cuts at: 1548 1548 Size: 5347 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2040 3958 136 Size: 107 122 71 631 605 368 1918 1525 Fragments arranged by size: 1918 1525 631 605 368 122 107 71 BglII A'GATC_T Cuts at: 5342 5342 Size: 5347 BlpI GC'TnA_GC Cuts at: 2764 2764 Size: 5347 Bme1580I G_kGCm'C Cuts at: 1790 2016 3408 4564 1790 Size: 226 1392 1156 2573 Fragments arranged by size: 2573 1392 1156 226 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5347 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3078 4036 442 Size: 416 53 83 399 24 1661 958 1753 Fragments arranged by size: 1753 1661 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 2373 1056 Size: 1317 4030 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4007 1239 Size: 2768 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2186 3472 4337 4635 2186 Size: 1286 865 298 2898 Fragments arranged by size: 2898 1286 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2615 4010 882 Size: 617 1116 1395 2219 Fragments arranged by size: 2219 1395 1116 617 BsaAI yAC'GTr Cuts at: 493 1204 2076 2518 3138 493 Size: 711 872 442 620 2702 Fragments arranged by size: 2702 872 711 620 442 BsaBI GATnn'nnATC Cuts at: 2195 5341 2195 Size: 3146 2201 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2577 3154 3536 4171 Size: 53 83 186 936 1044 577 382 635 Cuts at: 4171 275 Size: 1451 Fragments arranged by size: 1451 1044 936 635 577 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3780 4178 4452 4599 5010 3780 Size: 398 274 147 411 4117 Fragments arranged by size: 4117 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5122 Fragments arranged by size: 5122 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2171 1186 Size: 985 4362 BseYI C'CCAG_C Cuts at: 2019 4550 5046 2019 Size: 2531 496 2320 Fragments arranged by size: 2531 2320 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2249 1163 Size: 573 513 4261 Fragments arranged by size: 4261 573 513 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2797 3558 4586 1540 Size: 275 186 796 761 1028 2301 Fragments arranged by size: 2301 1028 796 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2444 2523 3408 3493 4564 2444 Size: 79 885 85 1071 3227 Fragments arranged by size: 3227 1071 885 85 79 BsiWI C'GTAC_G Cuts at: 2076 2076 Size: 5347 BsmI GAATG_Cn' Cuts at: 2208 2858 2951 2208 Size: 650 93 4604 Fragments arranged by size: 4604 650 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2016 2444 2523 2666 3408 3493 4564 Size: 399 226 428 79 143 742 85 1071 Cuts at: 4564 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 428 399 226 143 85 79 BspEI T'CCGG_A Cuts at: 5010 5010 Size: 5347 BspHI T'CATG_A Cuts at: 3236 4966 3236 Size: 1730 3617 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2702 844 Size: 1858 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3234 1394 Size: 429 1411 3507 Fragments arranged by size: 3507 1411 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3842 4016 65 Size: 1183 2594 174 1396 Fragments arranged by size: 2594 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3991 4178 1700 Size: 110 2181 187 2869 Fragments arranged by size: 2869 2181 187 110 BsrGI T'GTAC_A Cuts at: 96 2088 96 Size: 1992 3355 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5347 BssSI C'ACGA_G Cuts at: 2115 3407 4419 2115 Size: 1292 1012 3043 Fragments arranged by size: 3043 1292 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 2386 794 Size: 1592 3755 BstBI TT'CG_AA Cuts at: 4151 4151 Size: 5347 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5347 BstYI r'GATC_y Cuts at: 1972 2196 2413 2677 3044 3429 3446 4898 4984 Size: 224 217 264 367 385 17 1452 86 Cuts at: 4984 4996 5342 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 385 367 346 264 224 217 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2082 2501 2524 2598 513 Size: 552 939 78 419 23 74 3262 Fragments arranged by size: 3262 939 552 419 78 74 23 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4608 Fragments arranged by size: 4608 683 56 BtsI GCAGTG_nn' Cuts at: 2863 3657 3677 2863 Size: 794 20 4533 Fragments arranged by size: 4533 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5347 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5312 DraI TTT'AAA Cuts at: 2651 2651 Size: 5347 DraIII CAC_nnn'GTG Cuts at: 2227 2227 Size: 5347 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4354 809 Size: 507 3038 1802 Fragments arranged by size: 3038 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2794 3683 5312 Size: 54 1425 50 275 18 964 889 1629 Cuts at: 5312 8 Size: 43 Fragments arranged by size: 1629 1425 964 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2794 1537 Size: 275 982 4090 Fragments arranged by size: 4090 982 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3277 1353 Size: 1924 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3934 4308 4454 387 Size: 1064 138 2345 374 146 1280 Fragments arranged by size: 2345 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2442 2442 Size: 5347 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2438 3410 4007 4794 5062 1239 Size: 393 806 972 597 787 268 1524 Fragments arranged by size: 1524 972 806 787 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2012 2024 2012 Size: 12 5335 EcoRI G'AATT_C Cuts at: 2656 3034 2656 Size: 378 4969 FspI TGC'GCA Cuts at: 2287 3853 2287 Size: 1566 3781 HaeII r_GCGC'y Cuts at: 1678 2062 2376 4494 1678 Size: 384 314 2118 2531 Fragments arranged by size: 2531 2118 384 314 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2579 2611 3988 4020 4062 Size: 32 135 32 1007 32 1377 32 42 Cuts at: 4062 4094 1373 Size: 32 2626 Fragments arranged by size: 2626 1377 1007 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2691 2937 669 Size: 988 281 753 246 3079 Fragments arranged by size: 3079 988 753 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5347 HpaI GTT'AAC Cuts at: 2937 2937 Size: 5347 KpnI G_GTAC'C Cuts at: 2672 2672 Size: 5347 MfeI C'AATT_G Cuts at: 2946 2946 Size: 5347 MluI A'CGCG_T Cuts at: 5223 5223 Size: 5347 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4461 4645 1305 Size: 3156 184 2007 Fragments arranged by size: 3156 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3525 Fragments arranged by size: 3525 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3305 3664 3823 518 Size: 648 2139 359 159 2042 Fragments arranged by size: 2139 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2070 2233 2566 2763 3440 4588 4833 1606 Size: 464 163 333 197 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 464 333 245 197 163 NcoI C'CATG_G Cuts at: 513 1065 2004 2598 513 Size: 552 939 594 3262 Fragments arranged by size: 3262 939 594 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5347 NheI G'CTAG_C Cuts at: 1052 2369 1052 Size: 1317 4030 NotI GC'GGCC_GC Cuts at: 2794 2794 Size: 5347 NspI r_CATG'y Cuts at: 1132 1229 2497 2705 4250 1132 Size: 97 1268 208 1545 2229 Fragments arranged by size: 2229 1545 1268 208 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5347 PciI A'CATG_T Cuts at: 2493 4246 2493 Size: 1753 3594 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5347 PmeI GTTT'AAAC Cuts at: 2651 2651 Size: 5347 PmlI CAC'GTG Cuts at: 2518 2518 Size: 5347 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3416 3448 4929 4961 3416 Size: 32 1481 32 3802 Fragments arranged by size: 3802 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2024 2024 Size: 5347 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5347 PsiI TTA'TAA Cuts at: 2917 2917 Size: 5347 PspOMI G'GGCC_C Cuts at: 2012 2012 Size: 5347 PstI C_TGCA'G Cuts at: 830 2699 830 Size: 1869 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5347 PvuII CAG'CTG Cuts at: 2233 2233 Size: 5347 SacI G_AGCT'C Cuts at: 2444 2444 Size: 5347 SalI G'TCGA_C Cuts at: 1936 2689 1936 Size: 753 4594 SanDI GG'GwC_CC Cuts at: 2024 2024 Size: 5347 SbfI CC_TGCA'GG Cuts at: 2699 2699 Size: 5347 ScaI AGT'ACT Cuts at: 3595 5307 3595 Size: 1712 3635 SfcI C'TryA_G Cuts at: 826 1045 2695 3830 4511 4702 826 Size: 219 1650 1135 681 191 1471 Fragments arranged by size: 1650 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5347 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5347 SmaI CCC'GGG Cuts at: 1872 2674 1872 Size: 802 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2201 3451 4352 4614 820 Size: 197 926 258 1250 901 262 1553 Fragments arranged by size: 1553 1250 926 901 262 258 197 SnaBI TAC'GTA Cuts at: 493 3138 493 Size: 2645 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5347 SphI G_CATG'C Cuts at: 1132 2705 1132 Size: 1573 3774 SspI AAT'ATT Cuts at: 5 52 3271 5 Size: 47 3219 2081 Fragments arranged by size: 3219 2081 47 StuI AGG'CCT Cuts at: 1517 2096 1517 Size: 579 4768 StyI C'CwwG_G Cuts at: 513 1065 2004 2445 2598 2786 513 Size: 552 939 441 153 188 3074 Fragments arranged by size: 3074 939 552 441 188 153 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3374 3391 3544 3729 4174 325 Size: 1255 1794 17 153 185 445 1498 Fragments arranged by size: 1794 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2088 3593 5305 Size: 274 80 33 51 1443 111 1505 1712 Cuts at: 5305 96 Size: 138 Fragments arranged by size: 1712 1505 1443 274 138 111 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5307 5339 5307 Size: 32 5315 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5347 XbaI T'CTAG_A Cuts at: 2683 2683 Size: 5347 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5347 XmaI C'CCGG_G Cuts at: 1870 2672 1870 Size: 802 4545 XmnI GAAnn'nnTTC Cuts at: 3476 3476 Size: 5347 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3155 276 Size: 53 83 186 936 1621 2468 Fragments arranged by size: 2468 1621 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PmlI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SacI SalI SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsmBI BstXI BstZ17I Bsu36I EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PspXI PsrI RsrII SacII SapI SexAI SfiI SfoI SrfI SwaI XcmI