Restriction map for
pFN21AE0631
(Circular) (Six-base) MAPSORT of: pFN21AE0631.seq Check: 9313 from: 1 to: 5305
pFN21AE0631 5305 bp
With 182 enzymes: SgfI *
October 20, 2009 10:50 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2562 3115 278
Size: 53 83 186 936 1026 553 2468
Fragments arranged by size:
2468 1026 936 553 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2648 1937
Size: 711 4594
Acc65I G'GTAC_C
Cuts at: 2626 2626
Size: 5305
AclI AA'CG_TT
Cuts at: 1563 3432 3805 1563
Size: 1869 373 3063
Fragments arranged by size:
3063 1869 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3368 4752 5020 1632
Size: 1736 1384 268 1917
Fragments arranged by size:
1917 1736 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5108
AflIII A'CryG_T
Cuts at: 1203 2139 4204 5181 1203
Size: 936 2065 977 1327
Fragments arranged by size:
2065 1327 977 936
AgeI A'CCGG_T
Cuts at: 2161 4136 2161
Size: 1975 3330
AhdI GACnn_n'nnGTC
Cuts at: 4034 4034
Size: 5305
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5305
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2237 2442 1184
Size: 1053 205 4047
Fragments arranged by size:
4047 1053 205
AlwNI CAG_nnn'CTG
Cuts at: 3048 4620 3048
Size: 1572 3733
ApaI G_GGCC'C
Cuts at: 2085 2182 2388 2085
Size: 97 206 5002
Fragments arranged by size:
5002 206 97
ApaLI G'TGCA_C
Cuts at: 2405 3362 4518 2405
Size: 957 1156 3192
Fragments arranged by size:
3192 1156 957
ApoI r'AATT_y
Cuts at: 1493 2478 2614 2840 2992 5101 1493
Size: 985 136 226 152 2109 1697
Fragments arranged by size:
2109 1697 985 226 152 136
AseI AT'TA_AT
Cuts at: 160 1032 3859 160
Size: 872 2827 1606
Fragments arranged by size:
2827 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5305
AvaI C'yCGr_G
Cuts at: 1870 1943 2630 1870
Size: 73 687 4545
Fragments arranged by size:
4545 687 73
BamHI G'GATC_C
Cuts at: 2635 3002 2635
Size: 367 4938
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2626 4081 618
Size: 325 217 627 839 1455 1842
Fragments arranged by size:
1842 1455 839 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2085 2182 2388 2624 1391
Size: 694 97 206 236 4072
Fragments arranged by size:
4072 694 236 206 97
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2272 2583 928
Size: 971 373 311 3650
Fragments arranged by size:
3650 971 373 311
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 2287 2321 2464 2498 3496 3530 1903
Size: 34 350 34 143 34 998 34 3678
Fragments arranged by size:
3678 998 350 143 34 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3197 4407 3197
Size: 1210 4095
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5305
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2177 3916 136
Size: 107 122 71 631 605 505 1739 1525
Fragments arranged by size:
1739 1525 631 605 505 122 107 71
BglII A'GATC_T
Cuts at: 5300 5300
Size: 5305
BlpI GC'TnA_GC
Cuts at: 2722 2722
Size: 5305
Bme1580I G_kGCm'C
Cuts at: 1790 2085 2182 2388 2409 3366 4522 1790
Size: 295 97 206 21 957 1156 2573
Fragments arranged by size:
2573 1156 957 295 206 97 21
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5305
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3036 3994 442
Size: 416 53 83 399 24 1619 958 1753
Fragments arranged by size:
1753 1619 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5305
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2204 3965 1239
Size: 965 1761 2579
Fragments arranged by size:
2579 1761 965
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3430 4295 4593 3430
Size: 865 298 4142
Fragments arranged by size:
4142 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2180 3968 882
Size: 617 681 1788 2219
Fragments arranged by size:
2219 1788 681 617
BsaAI yAC'GTr
Cuts at: 493 1204 2020 3096 493
Size: 711 816 1076 2702
Fragments arranged by size:
2702 1076 816 711
BsaBI GATnn'nnATC
Cuts at: 5299 5299
Size: 5305
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2169 2559 3112 3494
Size: 53 83 186 936 636 390 553 382
Cuts at: 3494 4129 275
Size: 635 1451
Fragments arranged by size:
1451 936 636 635 553 390 382 186
83 53
BsaWI w'CCGG_w
Cuts at: 2161 3738 4136 4410 4557 4968 2161
Size: 1577 398 274 147 411 2498
Fragments arranged by size:
2498 1577 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2339 2369 1178
Size: 30 165 30 936 30 4114
Fragments arranged by size:
4114 936 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2603 1186
Size: 1417 3888
BseYI C'CCAG_C
Cuts at: 2078 4508 5004 2078
Size: 2430 496 2379
Fragments arranged by size:
2430 2379 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2015 1163
Size: 573 279 4453
Fragments arranged by size:
4453 573 279
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2755 3516 4544 1540
Size: 275 186 754 761 1028 2301
Fragments arranged by size:
2301 1028 761 754 275 186
BsiHKAI G_wGCw'C
Cuts at: 2409 3366 3451 4522 2409
Size: 957 85 1071 3192
Fragments arranged by size:
3192 1071 957 85
BsmI GAATG_Cn'
Cuts at: 2816 2909 2816
Size: 93 5212
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2085 2182 2388 2409 2624 3366 3451
Size: 399 295 97 206 21 215 742 85
Cuts at: 3451 4522 1391
Size: 1071 2174
Fragments arranged by size:
2174 1071 742 399 295 215 206 97
85 21
BspEI T'CCGG_A
Cuts at: 4968 4968
Size: 5305
BspHI T'CATG_A
Cuts at: 3194 4924 3194
Size: 1730 3575
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2037 2660 844
Size: 1193 623 3489
Fragments arranged by size:
3489 1193 623
BsrBI CCG'CTC
Cuts at: 1394 1823 2127 2265 2434 3192 1394
Size: 429 304 138 169 758 3507
Fragments arranged by size:
3507 758 429 304 169 138
BsrDI GCAATG_nn'
Cuts at: 65 1248 2058 3800 3974 65
Size: 1183 810 1742 174 1396
Fragments arranged by size:
1742 1396 1183 810 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2161 3949 4136 1700
Size: 110 351 1788 187 2869
Fragments arranged by size:
2869 1788 351 187 110
BsrGI T'GTAC_A
Cuts at: 96 2322 96
Size: 2226 3079
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5305
BssSI C'ACGA_G
Cuts at: 3365 4377 3365
Size: 1012 4293
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5305
BstBI TT'CG_AA
Cuts at: 4109 4109
Size: 5305
BstEII G'GTnAC_C
Cuts at: 1184 2041 1184
Size: 857 4448
BstYI r'GATC_y
Cuts at: 1972 2635 3002 3387 3404 4856 4942 4954 5300
Size: 663 367 385 17 1452 86 12 346
Cuts at: 5300 1972
Size: 1977
Fragments arranged by size:
1977 1452 663 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2037 2037
Size: 5305
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3814
Fragments arranged by size:
3814 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4566
Fragments arranged by size:
4566 683 56
BtsI GCAGTG_nn'
Cuts at: 2821 3615 3635 2821
Size: 794 20 4491
Fragments arranged by size:
4491 794 20
ClaI AT'CG_AT
Cuts at: 1554 2442 1554
Size: 888 4417
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5270
DraI TTT'AAA
Cuts at: 2609 2609
Size: 5305
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4312 809
Size: 507 2996 1802
Fragments arranged by size:
2996 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2752 3641 5270
Size: 54 1425 50 275 18 922 889 1629
Cuts at: 5270 8
Size: 43
Fragments arranged by size:
1629 1425 922 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2752 1537
Size: 275 940 4090
Fragments arranged by size:
4090 940 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3235 1353
Size: 1882 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3892 4266 4412 387
Size: 1064 138 2303 374 146 1280
Fragments arranged by size:
2303 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2204 3368 3965 4752 5020 1239
Size: 393 572 1164 597 787 268 1524
Fragments arranged by size:
1524 1164 787 597 572 393 268
EcoNI CCTnn'n_nnAGG
Cuts at: 2536 2536
Size: 5305
EcoO109I rG'GnC_Cy
Cuts at: 2179 2245 2384 2179
Size: 66 139 5100
Fragments arranged by size:
5100 139 66
EcoRI G'AATT_C
Cuts at: 2614 2992 2614
Size: 378 4927
FspI TGC'GCA
Cuts at: 2225 3811 2225
Size: 1586 3719
FspAI rTGC'GCAy
Cuts at: 2225 2225
Size: 5305
HaeII r_GCGC'y
Cuts at: 1678 2321 4452 1678
Size: 643 2131 2531
Fragments arranged by size:
2531 2131 643
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3946 3978 4020 4052 1373
Size: 32 135 32 2374 32 42 32 2626
Fragments arranged by size:
2626 2374 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2149 2649 2895 669
Size: 988 281 211 500 246 3079
Fragments arranged by size:
3079 988 500 281 246 211
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5305
HpaI GTT'AAC
Cuts at: 2895 2895
Size: 5305
KpnI G_GTAC'C
Cuts at: 2630 2630
Size: 5305
MfeI C'AATT_G
Cuts at: 2904 2904
Size: 5305
MluI A'CGCG_T
Cuts at: 2139 5181 2139
Size: 3042 2263
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4419 4603 1305
Size: 3114 184 2007
Fragments arranged by size:
3114 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3483
Fragments arranged by size:
3483 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2444 3263 3622 3781 518
Size: 648 1278 819 359 159 2042
Fragments arranged by size:
2042 1278 819 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2078 2721 3398 4546 4791 1606
Size: 472 643 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 643 472 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3814
Fragments arranged by size:
3814 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5305
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5305
NotI GC'GGCC_GC
Cuts at: 2752 2752
Size: 5305
NspI r_CATG'y
Cuts at: 1132 1229 2461 2663 4208 1132
Size: 97 1232 202 1545 2229
Fragments arranged by size:
2229 1545 1232 202 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5305
PciI A'CATG_T
Cuts at: 4204 4204
Size: 5305
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5305
PmeI GTTT'AAAC
Cuts at: 2609 2609
Size: 5305
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3374 3406 4887 4919 3374
Size: 32 1481 32 3760
Fragments arranged by size:
3760 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2245 2245
Size: 5305
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5305
PsiI TTA'TAA
Cuts at: 2875 2875
Size: 5305
PspOMI G'GGCC_C
Cuts at: 2081 2178 2384 2081
Size: 97 206 5002
Fragments arranged by size:
5002 206 97
PsrI GAACnnnnnnTACnnnnnnn_nnnnn'
Cuts at: 2051 2083 2051
Size: 32 5273
PstI C_TGCA'G
Cuts at: 830 2108 2657 830
Size: 1278 549 3478
Fragments arranged by size:
3478 1278 549
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5305
PvuII CAG'CTG
Cuts at: 2078 2078
Size: 5305
SalI G'TCGA_C
Cuts at: 1936 2647 1936
Size: 711 4594
SanDI GG'GwC_CC
Cuts at: 2245 2245
Size: 5305
SbfI CC_TGCA'GG
Cuts at: 2657 2657
Size: 5305
ScaI AGT'ACT
Cuts at: 3553 5265 3553
Size: 1712 3593
SfcI C'TryA_G
Cuts at: 826 1045 2104 2653 3788 4469 4660 826
Size: 219 1059 549 1135 681 191 1471
Fragments arranged by size:
1471 1135 1059 681 549 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5305
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5305
SmaI CCC'GGG
Cuts at: 1872 2632 1872
Size: 760 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3409 4310 4572 820
Size: 197 926 1466 901 262 1553
Fragments arranged by size:
1553 1466 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3096 493
Size: 2603 2702
SpeI A'CTAG_T
Cuts at: 152 2549 152
Size: 2397 2908
SphI G_CATG'C
Cuts at: 1132 2663 1132
Size: 1531 3774
SspI AAT'ATT
Cuts at: 5 52 3229 5
Size: 47 3177 2081
Fragments arranged by size:
3177 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5305
StyI C'CwwG_G
Cuts at: 513 1065 2004 2388 2744 513
Size: 552 939 384 356 3074
Fragments arranged by size:
3074 939 552 384 356
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2060 3332 3349 3502 3687 4132 325
Size: 1255 480 1272 17 153 185 445 1498
Fragments arranged by size:
1498 1272 1255 480 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2322 3551 5263
Size: 274 80 33 51 1443 345 1229 1712
Cuts at: 5263 96
Size: 138
Fragments arranged by size:
1712 1443 1229 345 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5265 5297 5265
Size: 32 5273
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5305
XbaI T'CTAG_A
Cuts at: 2641 2641
Size: 5305
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2179 2179
Size: 5305
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5305
XmaI C'CCGG_G
Cuts at: 1870 2630 1870
Size: 760 4545
XmnI GAAnn'nnTTC
Cuts at: 3434 3434
Size: 5305
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2560 3113 276
Size: 53 83 186 936 1026 553 2468
Fragments arranged by size:
2468 1026 936 553 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoNI EcoO109I EcoRI FspI FspAI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI
PsrI PstI PvuI PvuII SalI SanDI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII
EcoICRI EcoRV FalI FseI KasI NaeI NarI NgoMIV
NruI NsiI PacI PfoI PmlI PspXI RsrII SacI
SacII SapI SexAI SfiI SfoI SrfI SwaI