Result of FASTA (ccds) for
pFN21AE0610
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0610, 363 aa
1>>>pF1KE0610 363 - 363 aa - 363 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3683+/-0.000845; mu= 11.6348+/- 0.051
mean_var=86.6999+/-17.208, 0's: 0 Z-trim(108.2): 31 B-trim: 56 in 1/52
Lambda= 0.137742
statistics sampled from 10069 (10090) to 10069 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.31), width: 16
Scan time: 2.770
The best scores are: opt bits E(32554)
CCDS7583.1 PLEKHS1 gene_id:79949|Hs108|chr10 ( 363) 2396 485.9 2.3e-137
CCDS53580.1 PLEKHS1 gene_id:79949|Hs108|chr10 ( 465) 2049 417.0 1.6e-116
CCDS53581.1 PLEKHS1 gene_id:79949|Hs108|chr10 ( 366) 1524 312.6 3.4e-85
>>CCDS7583.1 PLEKHS1 gene_id:79949|Hs108|chr10 (363 aa)
initn: 2396 init1: 2396 opt: 2396 Z-score: 2579.5 bits: 485.9 E(32554): 2.3e-137
Smith-Waterman score: 2396; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KE0 MEPKPQKSPGKQFTFSYENEVCKQDYFIKSPPSQLFSSVTSWKKRFFILSKAGEKSFSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MEPKPQKSPGKQFTFSYENEVCKQDYFIKSPPSQLFSSVTSWKKRFFILSKAGEKSFSLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YYKDHHHRGSIEIDQNSSVEVGISSQEKMQSVQKMFKCHPDEVMSIRTTNREYFLIGHDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YYKDHHHRGSIEIDQNSSVEVGISSQEKMQSVQKMFKCHPDEVMSIRTTNREYFLIGHDR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EKIKDWVSFMSSFRQDIKATQQNTEEELSLGNKRTLFYSSPLLGPSSTSEAVGSSSPRNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKIKDWVSFMSSFRQDIKATQQNTEEELSLGNKRTLFYSSPLLGPSSTSEAVGSSSPRNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LQDKHLMEQSSPGFRQTHLQDLSEATQDVKEENHYLTPRSVLLELDNIIASSDSGESIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LQDKHLMEQSSPGFRQTHLQDLSEATQDVKEENHYLTPRSVLLELDNIIASSDSGESIET
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 DGPDQVSGRIECHYEPMESYFFKETSHESVDSSKEEPQTLPETQDGDLHLQEQGSGIDWC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DGPDQVSGRIECHYEPMESYFFKETSHESVDSSKEEPQTLPETQDGDLHLQEQGSGIDWC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 LSPADVEAQTTNDQKGSASLTVVQLSILINNIPDESQVEKLNVFLSPPDVINYLALTEAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LSPADVEAQTTNDQKGSASLTVVQLSILINNIPDESQVEKLNVFLSPPDVINYLALTEAT
310 320 330 340 350 360
pF1KE0 GRI
:::
CCDS75 GRI
>>CCDS53580.1 PLEKHS1 gene_id:79949|Hs108|chr10 (465 aa)
initn: 2071 init1: 2047 opt: 2049 Z-score: 2205.2 bits: 417.0 E(32554): 1.6e-116
Smith-Waterman score: 2217; 96.0% identity (96.0% similar) in 354 aa overlap (10-363:4-343)
10 20 30 40 50 60
pF1KE0 MEPKPQKSPGKQFTFSYENEVCKQDYFIKSPPSQLFSSVTSWKKRFFILSKAGEKSFSLS
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAGGKQFTFSYENEVCKQDYFIKSPPSQLFSSVTSWKKRFFILSKAGEKSFSLS
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 YYKDHHHRGSIEIDQNSSVEVGISSQEKMQSVQKMFKCHPDEVMSIRTTNREYFLIGHDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YYKDHHHRGSIEIDQNSSVEVGISSQEKMQSVQKMFKCHPDEVMSIRTTNREYFLIGHDR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 EKIKDWVSFMSSFRQDIKATQQNTEEELSLGNKRTLFYSSPLLGPSSTSEAVGSSSPRNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EKIKDWVSFMSSFRQDIKATQQNTEEELSLGNKRTLFYSSPLLGPSSTSEAVGSSSPRNG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 LQDKHLMEQSSPGFRQTHLQDLSEATQDVKEENHYLTPRSVLLELDNIIASSDSGESIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LQDKHLMEQSSPGFRQTHLQDLSEATQDVKEENHYLTPRSVLLELDNIIASSDSGESIET
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE0 DGPDQVSGRIECHYEPMESYFFKETSHESVDSSKEEPQTLPETQDGDLHLQEQGSGIDWC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DGPDQVSGRIECHYEPMESYFFKETSHESVDSSKEEPQTLPETQDGDLHLQEQGSGIDWC
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE0 LSPADVEAQTTNDQKGSASLTVVQLSILINNIPDESQVEKLNVFLSPPDVINYLALTEAT
:::::::::::::::: ::::::::::::::::::::::::::::::
CCDS53 LSPADVEAQTTNDQKG--------------NIPDESQVEKLNVFLSPPDVINYLALTEAT
300 310 320 330 340
pF1KE0 GRI
:::
CCDS53 GRICVSQWEGPPRLGCIFCHGDHLLAVNDLKPQSLEEVSLFLTRSIQKEDSFRILSYQVA
350 360 370 380 390 400
>>CCDS53581.1 PLEKHS1 gene_id:79949|Hs108|chr10 (366 aa)
initn: 1546 init1: 1522 opt: 1524 Z-score: 1643.0 bits: 312.6 E(32554): 3.4e-85
Smith-Waterman score: 1692; 94.9% identity (94.9% similar) in 275 aa overlap (89-363:1-261)
60 70 80 90 100 110
pF1KE0 LSYYKDHHHRGSIEIDQNSSVEVGISSQEKMQSVQKMFKCHPDEVMSIRTTNREYFLIGH
::::::::::::::::::::::::::::::
CCDS53 MQSVQKMFKCHPDEVMSIRTTNREYFLIGH
10 20 30
120 130 140 150 160 170
pF1KE0 DREKIKDWVSFMSSFRQDIKATQQNTEEELSLGNKRTLFYSSPLLGPSSTSEAVGSSSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DREKIKDWVSFMSSFRQDIKATQQNTEEELSLGNKRTLFYSSPLLGPSSTSEAVGSSSPR
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE0 NGLQDKHLMEQSSPGFRQTHLQDLSEATQDVKEENHYLTPRSVLLELDNIIASSDSGESI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NGLQDKHLMEQSSPGFRQTHLQDLSEATQDVKEENHYLTPRSVLLELDNIIASSDSGESI
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE0 ETDGPDQVSGRIECHYEPMESYFFKETSHESVDSSKEEPQTLPETQDGDLHLQEQGSGID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ETDGPDQVSGRIECHYEPMESYFFKETSHESVDSSKEEPQTLPETQDGDLHLQEQGSGID
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE0 WCLSPADVEAQTTNDQKGSASLTVVQLSILINNIPDESQVEKLNVFLSPPDVINYLALTE
:::::::::::::::::: ::::::::::::::::::::::::::::
CCDS53 WCLSPADVEAQTTNDQKG--------------NIPDESQVEKLNVFLSPPDVINYLALTE
220 230 240 250
360
pF1KE0 ATGRI
:::::
CCDS53 ATGRICVSQWEGPPRLGCIFCHGDHLLAVNDLKPQSLEEVSLFLTRSIQKEKLKLTIGRI
260 270 280 290 300 310
363 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:27:48 2016 done: Wed Nov 2 20:27:48 2016
Total Scan time: 2.770 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]