Result of FASTA (ccds) for
pFN21AE0587
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0587, 278 aa
1>>>pF1KE0587 278 - 278 aa - 278 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7633+/-0.00171; mu= 9.2052+/- 0.105
mean_var=375.8756+/-72.207, 0's: 0 Z-trim(110.1): 168 B-trim: 27 in 1/49
Lambda= 0.066153
statistics sampled from 11194 (11350) to 11194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.349), width: 16
Scan time: 1.960
The best scores are: opt bits E(32554)
CCDS31330.1 1 gene_id:387264|Hs108|chr11 ( 278) 2415 244.0 8.7e-65
CCDS41592.1 5 gene_id:439915|Hs108|chr11 ( 237) 1128 121.1 7.6e-28
CCDS41684.1 10 gene_id:387273|Hs108|chr11 ( 202) 1117 119.9 1.4e-27
CCDS41591.1 3 gene_id:387266|Hs108|chr11 ( 238) 1021 110.9 9e-25
CCDS41682.1 7 gene_id:440050|Hs108|chr11 ( 165) 910 100.0 1.2e-21
CCDS31331.1 2 gene_id:440021|Hs108|chr11 ( 177) 850 94.3 6.3e-20
CCDS41685.1 11 gene_id:440051|Hs108|chr11 ( 156) 809 90.3 9e-19
CCDS41683.1 8 gene_id:57830|Hs108|chr11 ( 187) 779 87.6 7.2e-18
CCDS53677.1 9 gene_id:3846|Hs108|chr11 ( 169) 751 84.9 4.3e-17
CCDS31332.1 6 gene_id:440023|Hs108|chr11 ( 129) 653 75.3 2.5e-14
CCDS56029.1 1 gene_id:728318|Hs108|chr17 ( 250) 582 69.0 3.8e-12
CCDS42957.1 4 gene_id:386672|Hs108|chr21 ( 401) 566 67.8 1.4e-11
>>CCDS31330.1 1 gene_id:387264|Hs108|chr11 (278 aa)
initn: 2415 init1: 2415 opt: 2415 Z-score: 1276.6 bits: 244.0 E(32554): 8.7e-65
Smith-Waterman score: 2415; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCC
190 200 210 220 230 240
250 260 270
pF1KE0 KPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
::::::::::::::::::::::::::::::::::::::
CCDS31 KPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
250 260 270
>>CCDS41592.1 5 gene_id:439915|Hs108|chr11 (237 aa)
initn: 1729 init1: 715 opt: 1128 Z-score: 613.4 bits: 121.1 E(32554): 7.6e-28
Smith-Waterman score: 1311; 60.7% identity (64.8% similar) in 298 aa overlap (1-278:1-237)
10 20 30 40
pF1KE0 MGCCGCSGGCGSSCGG-------CGSGCGGCGSGCGGCGSGCGGSG-------------S
::::::::::::.::: ::::::::::::::::::::: : :
CCDS41 MGCCGCSGGCGSGCGGRGSGCGGCGSGCGGCGSGCGGCGSGCGGCGGCGSGCAGCGGCGS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 SCCVPVCCCKPVCCRVPTCSCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCG
.::::::::::.:: ::.::::::::::::: :::: :: ::: ::.::::::::::::
CCDS41 GCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGCG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 SCGGSKGGCGSCGGSKGGCGSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSC
::::::::::::::::::::: ::: .::::::
CCDS41 SCGGSKGGCGSCGGSKGGCGS-CGG---------------------------SKGGCGSY
130 140 150
170 180 190 200 210 220
pF1KE0 GCSKGACGSCGGSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSC
:::...: : : : :.: ::::.: : :.: : :: :::
CCDS41 GCSQSSC---------CKPC--C---CSS------GCGSSC--CQSSCCKPYCCQ--SSC
160 170 180
230 240 250 260 270
pF1KE0 GSCAGSKGGCGSSCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
: : : :::::: : :::::::::::: :::: ::::::::::::::
CCDS41 ---------CKPYCCQSSCCKPCSCFSGCGSSCCQSSCYKPCCCQSSCCVPVCCQCKI
190 200 210 220 230
>>CCDS41684.1 10 gene_id:387273|Hs108|chr11 (202 aa)
initn: 607 init1: 607 opt: 1117 Z-score: 608.4 bits: 119.9 E(32554): 1.4e-27
Smith-Waterman score: 1323; 64.2% identity (66.3% similar) in 279 aa overlap (1-278:1-202)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
::::::::::::.::::::::::::::::: :::::: :::::::::::::::: ::.::
CCDS41 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSGCGGCGSSCCVPVCCCKPVCCCVPACS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCG
:::: :: ::::: :::::: :::::::::::::::::::::::::::::::::::
CCDS41 CSSC-----GSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCG
70 80 90 100 110
130 140 150 160 170 180
pF1KE0 SGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSC
: :::::::::::
CCDS41 S------------------------------------------------CGGSKGGCGSC
120
190 200 210 220 230 240
pF1KE0 GGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCC
:: :::::::: :. : .: : :::: :.:::: : : :::
CCDS41 GGSKGGCGSCG---------CSQC--NCCKP-CCCS-SGCGSC------C-----QSSCC
130 140 150 160
250 260 270
pF1KE0 KPCCC-SSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
.:::: :: : ::::::::::: ::::::::::::::
CCDS41 NPCCCQSSCCVPVCCQSSCCKPCCCQSSCCVPVCCQCKI
170 180 190 200
>>CCDS41591.1 3 gene_id:387266|Hs108|chr11 (238 aa)
initn: 1420 init1: 579 opt: 1021 Z-score: 558.2 bits: 110.9 E(32554): 9e-25
Smith-Waterman score: 1281; 61.0% identity (67.9% similar) in 287 aa overlap (1-278:1-238)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
::: :::::::::::::::.::::::: ::::::: :::::::::::: ::.::
CCDS41 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGC-------CVPVCCCKPVCCCVPACS
10 20 30 40 50
70 80 90 100 110
pF1KE0 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGS------CGGSKGGCGSCGG
:::: :: ::::: ::::::::::::::::::::::: : .:. ::::::
CCDS41 CSSC-----GSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSS--CGSCGG
60 70 80 90 100
120 130 140 150 160 170
pF1KE0 SKGGCG--SGC-GGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCG
::: :: .: ::::: : : :: ::: .:. ::: ...: . .::...:
CCDS41 SKGVCGFRGGSKGGCGSCGCSQCSCYKP-CCCSSGCG-SSCCQSSCCKPSCSQSSC----
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE0 GSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCG
: : :. . :: : : :.:::: ::. : : :
CCDS41 -----CKPC--CSQS--SC------CKPCC--CSSGCGS--SCCQSSCCKPC--------
170 180 190
240 250 260 270
pF1KE0 SSCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
::: ::::::::::::::::::::::::: ::::::::.::::::
CCDS41 --CSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
200 210 220 230
>>CCDS41682.1 7 gene_id:440050|Hs108|chr11 (165 aa)
initn: 1373 init1: 600 opt: 910 Z-score: 502.4 bits: 100.0 E(32554): 1.2e-21
Smith-Waterman score: 1080; 70.9% identity (77.2% similar) in 189 aa overlap (90-278:2-165)
60 70 80 90 100 110
pF1KE0 SCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGC
: :: :.: ::: :::.::.. :::
CCDS41 MGCCGCSEG-CGS------GCGGCGSGCGGC
10 20
120 130 140 150 160 170
pF1KE0 GSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGS
::::::::::::::::::::.::::::::::::: ::: :::.:::::::::::::
CCDS41 GSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCG-----SCGGSKGGCGSCGGSKGGCGS
30 40 50 60 70
180 190 200 210 220 230
pF1KE0 CGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSC
::: :::::::: :. .: . : :.:::: ::. : : : : : ::
CCDS41 CGGSKGGCGSCGCSQCSCYKPCC-CSSGCGSS--CCQSSCCKPC----------CCQSSC
80 90 100 110 120
240 250 260 270
pF1KE0 CKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
::::::::::::::::::::.::::::::::::::::::
CCDS41 CKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
130 140 150 160
>>CCDS31331.1 2 gene_id:440021|Hs108|chr11 (177 aa)
initn: 1174 init1: 457 opt: 850 Z-score: 471.2 bits: 94.3 E(32554): 6.3e-20
Smith-Waterman score: 1038; 65.2% identity (72.1% similar) in 204 aa overlap (77-278:2-177)
50 60 70 80 90 100
pF1KE0 CCCKPVCCRVPTCSCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGS-CGGS
: :: :: .:::.::.: ::::: :::
CCDS31 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGC
10 20 30
110 120 130 140 150 160
pF1KE0 KGGCGSCGGSKGGCGSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKG
.: :.::.. :::.:.:::::: : ::::::::.: ::::::.:::
CCDS31 GSGRGGCGSGCGGCSSSCGGCGSRCYVPVCCCKPVCSWVPACSCTSCG------------
40 50 60 70
170 180 190 200 210 220
pF1KE0 ACGSCGGSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAG
:::::::::::::: :::::::::::::::: :: :.: : ::::
CCDS31 ---SCGGSKGGCGSCGGSKGGCGSCGGSKGGCGS-CGCSQSSCCKP-CCCS---------
80 90 100 110 120
230 240 250 260 270
pF1KE0 SKGGCGSSCSQCSCCKPCCC-SSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
.:::::: : :::::::: :: : ::::::::::: ::.:::::::::::
CCDS31 --SGCGSSCCQSSCCKPCCCQSSCCVPVCCQSSCCKPCCCQSNCCVPVCCQCKI
130 140 150 160 170
>>CCDS41685.1 11 gene_id:440051|Hs108|chr11 (156 aa)
initn: 1098 init1: 470 opt: 809 Z-score: 450.5 bits: 90.3 E(32554): 9e-19
Smith-Waterman score: 939; 64.0% identity (73.5% similar) in 189 aa overlap (90-278:2-156)
60 70 80 90 100 110
pF1KE0 SCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGC
: :: : ::::: :::.::...:::
CCDS41 MGCCGCS-GGCGS------GCGGCGSGSGGC
10 20
120 130 140 150 160 170
pF1KE0 GSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGS
::::::::::::::.:::::.::::::::::::: ::: :::.:::::.:::::::
CCDS41 GSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCG-----SCGGSKGGCGSCGSSKGGCGS
30 40 50 60 70
180 190 200 210 220 230
pF1KE0 CGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSC
:: ...: . :..:::: : : :.:. : :::. ::: : ::
CCDS41 CGCSQSNCCKPCCSSSGCGSFC--CQSSCSKP-CCCQ---------------SSCCQSSC
80 90 100 110 120
240 250 260 270
pF1KE0 CKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
::::::.: ::::::: :::: ::::::::::::::
CCDS41 CKPCCCQS----SCCQSSCFKPCCCQSSCCVPVCCQCKI
130 140 150
>>CCDS41683.1 8 gene_id:57830|Hs108|chr11 (187 aa)
initn: 892 init1: 531 opt: 779 Z-score: 434.3 bits: 87.6 E(32554): 7.2e-18
Smith-Waterman score: 1087; 55.8% identity (60.4% similar) in 278 aa overlap (1-278:1-187)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
::::::::::::.::::::::::::: :::::.:::::::: ::.::
CCDS41 MGCCGCSGGCGSGCGGCGSGCGGCGS--------------SCCVPICCCKPVCCCVPACS
10 20 30 40
70 80 90 100 110 120
pF1KE0 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCG
:::: :: :::::: ::::: :: ::::::::::::::: :..:. : :
CCDS41 CSSC-----GSCGGSKGGRGSCGGSKGDCGSCGGSKGGCGSCG-----CSQCSCYKPCCC
50 60 70 80 90
130 140 150 160 170 180
pF1KE0 SGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSC
:. ::::::: :::: : :: ::: : :.::.:
CCDS41 SS--GCGSSCC-QSSCCKP--C----CSQSSC----CKPCSCSSG---------------
100 110 120
190 200 210 220 230 240
pF1KE0 GGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCC
:::.: : :.: :. : ::: :::
CCDS41 ----------------CGSSC--CQSSC--------CKPC-------------CSQSSCC
130 140
250 260 270
pF1KE0 KPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
:::::::::::::::::::::::::::::::.::::::
CCDS41 KPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPICCQCKI
150 160 170 180
>>CCDS53677.1 9 gene_id:3846|Hs108|chr11 (169 aa)
initn: 1909 init1: 629 opt: 751 Z-score: 420.3 bits: 84.9 E(32554): 4.3e-17
Smith-Waterman score: 961; 65.1% identity (74.1% similar) in 189 aa overlap (90-278:2-169)
60 70 80 90 100 110
pF1KE0 SCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGC
: :: : ::::: .::.: .: :.:
CCDS53 MGCCGCS-GGCGS------SCGGCDSSCGSC
10 20
120 130 140 150 160 170
pF1KE0 GSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGS
:::: ::: :::.:: ::::.:::::::::::::: :::::: :::.::::: :..
CCDS53 GSGCRGCGPSCCAPVYCCKPVCCCVPACSCSSCGKRGCGSCGGSKGGCGSCG-----CSQ
30 40 50 60 70
180 190 200 210 220 230
pF1KE0 CGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSC
:. :: : :. .::::.: : .: : : .:: : : .:.: :::: : ::
CCDS53 CSCCKPCC--CS---SGCGSSC--CQCSCCKPYCS-QCSCCKPCCSSSGR-GSSCCQSSC
80 90 100 110 120 130
240 250 260 270
pF1KE0 CKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
::::: ::::::::::::::::::::: :::::: ::::
CCDS53 CKPCCSSSGCGSSCCQSSCCKPCCSQSRCCVPVCYQCKI
140 150 160
>>CCDS31332.1 6 gene_id:440023|Hs108|chr11 (129 aa)
initn: 1095 init1: 418 opt: 653 Z-score: 370.8 bits: 75.3 E(32554): 2.5e-14
Smith-Waterman score: 892; 64.4% identity (67.2% similar) in 180 aa overlap (100-278:2-129)
70 80 90 100 110 120
pF1KE0 GSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGS-CGGSKGGCGSGCGGCGS
: :: : ::::: ::: ::::::::::
CCDS31 MGCCGCS-GGCGSGCGG----CGSGCGGCGS
10 20
130 140 150 160 170 180
pF1KE0 SCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSCGGCKGGCG
:::::.:::::.:::::::::.::: ::: ::: :::::::::::::::: :::::
CCDS31 SCCVPICCCKPVCCCVPACSCTSCG-----SCGGSKGCCGSCGGSKGGCGSCGGSKGGCG
30 40 50 60 70 80
190 200 210 220 230 240
pF1KE0 SCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCCKPCCCSSG
::: :::::::::: ::::
CCDS31 SCG------------------------------------------CSQCSCCKPCYCSSG
90
250 260 270
pF1KE0 CGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
:::::::::::::::::.:::::.::::::
CCDS31 CGSSCCQSSCCKPCCSQASCCVPICCQCKI
100 110 120
278 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:04:32 2016 done: Wed Nov 2 21:04:32 2016
Total Scan time: 1.960 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]