FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4121, 505 aa 1>>>pF1KE4121 505 - 505 aa - 505 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6487+/-0.000856; mu= 12.5214+/- 0.052 mean_var=104.4841+/-21.241, 0's: 0 Z-trim(109.3): 31 B-trim: 12 in 1/52 Lambda= 0.125473 statistics sampled from 10788 (10812) to 10788 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.332), width: 16 Scan time: 3.280 The best scores are: opt bits E(32554) CCDS69308.1 RABGEF1 gene_id:27342|Hs108|chr7 ( 505) 3378 622.1 4.4e-178 CCDS5535.1 RABGEF1 gene_id:27342|Hs108|chr7 ( 491) 3291 606.4 2.4e-173 CCDS75610.1 RABGEF1 gene_id:27342|Hs108|chr7 ( 299) 2013 374.9 6.9e-104 >>CCDS69308.1 RABGEF1 gene_id:27342|Hs108|chr7 (505 aa) initn: 3378 init1: 3378 opt: 3378 Z-score: 3310.6 bits: 622.1 E(32554): 4.4e-178 Smith-Waterman score: 3378; 100.0% identity (100.0% similar) in 505 aa overlap (1-505:1-505) 10 20 30 40 50 60 pF1KE4 MMASSYHEVVSRKKMSLKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MMASSYHEVVSRKKMSLKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 RQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 ASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 MHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 ETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 ETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 KLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 KLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 LMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPDACLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 LMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPDACLG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 VKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKPPNQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 VKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKPPNQP 430 440 450 460 470 480 490 500 pF1KE4 LAAIDSENVENDKLPPPLQPQVYAG ::::::::::::::::::::::::: CCDS69 LAAIDSENVENDKLPPPLQPQVYAG 490 500 >>CCDS5535.1 RABGEF1 gene_id:27342|Hs108|chr7 (491 aa) initn: 3291 init1: 3291 opt: 3291 Z-score: 3225.6 bits: 606.4 E(32554): 2.4e-173 Smith-Waterman score: 3291; 100.0% identity (100.0% similar) in 491 aa overlap (15-505:1-491) 10 20 30 40 50 60 pF1KE4 MMASSYHEVVSRKKMSLKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA :::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MSLKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA 10 20 30 40 70 80 90 100 110 120 pF1KE4 RQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFS 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 ASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEG 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE4 MHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCP 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE4 ETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRD 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE4 KLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSR 290 300 310 320 330 340 370 380 390 400 410 420 pF1KE4 LMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPDACLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPDACLG 350 360 370 380 390 400 430 440 450 460 470 480 pF1KE4 VKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKPPNQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKPPNQP 410 420 430 440 450 460 490 500 pF1KE4 LAAIDSENVENDKLPPPLQPQVYAG ::::::::::::::::::::::::: CCDS55 LAAIDSENVENDKLPPPLQPQVYAG 470 480 490 >>CCDS75610.1 RABGEF1 gene_id:27342|Hs108|chr7 (299 aa) initn: 2013 init1: 2013 opt: 2013 Z-score: 1978.6 bits: 374.9 E(32554): 6.9e-104 Smith-Waterman score: 2013; 100.0% identity (100.0% similar) in 299 aa overlap (207-505:1-299) 180 190 200 210 220 230 pF1KE4 FLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKY :::::::::::::::::::::::::::::: CCDS75 MQTRGKVPPERVEKIMDQIEKYIMTRLYKY 10 20 30 240 250 260 270 280 290 pF1KE4 VFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 VFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKR 40 50 60 70 80 90 300 310 320 330 340 350 pF1KE4 VPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 VPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFC 100 110 120 130 140 150 360 370 380 390 400 410 pF1KE4 NPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 NPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPD 160 170 180 190 200 210 420 430 440 450 460 470 pF1KE4 ACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 ACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKP 220 230 240 250 260 270 480 490 500 pF1KE4 PNQPLAAIDSENVENDKLPPPLQPQVYAG ::::::::::::::::::::::::::::: CCDS75 PNQPLAAIDSENVENDKLPPPLQPQVYAG 280 290 505 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:24:37 2016 done: Sun Nov 6 03:24:38 2016 Total Scan time: 3.280 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]