FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4074, 400 aa 1>>>pF1KE4074 400 - 400 aa - 400 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8140+/-0.000981; mu= 14.0095+/- 0.059 mean_var=68.3271+/-13.380, 0's: 0 Z-trim(104.3): 32 B-trim: 0 in 0/49 Lambda= 0.155159 statistics sampled from 7790 (7817) to 7790 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.24), width: 16 Scan time: 2.030 The best scores are: opt bits E(32554) CCDS6911.1 TBC1D13 gene_id:54662|Hs108|chr9 ( 400) 2697 613.0 1.6e-175 CCDS69677.1 TBC1D13 gene_id:54662|Hs108|chr9 ( 275) 1217 281.6 6e-76 CCDS33714.1 TBC1D5 gene_id:9779|Hs108|chr3 ( 795) 272 70.2 7.5e-12 CCDS46770.1 TBC1D5 gene_id:9779|Hs108|chr3 ( 817) 272 70.2 7.7e-12 >>CCDS6911.1 TBC1D13 gene_id:54662|Hs108|chr9 (400 aa) initn: 2697 init1: 2697 opt: 2697 Z-score: 3264.8 bits: 613.0 E(32554): 1.6e-175 Smith-Waterman score: 2697; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400) 10 20 30 40 50 60 pF1KE4 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 SILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 LQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 NMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 NMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 TFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 TFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 ELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 ELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLM 310 320 330 340 350 360 370 380 390 400 pF1KE4 LIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK :::::::::::::::::::::::::::::::::::::::: CCDS69 LIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK 370 380 390 400 >>CCDS69677.1 TBC1D13 gene_id:54662|Hs108|chr9 (275 aa) initn: 1838 init1: 1217 opt: 1217 Z-score: 1477.0 bits: 281.6 E(32554): 6e-76 Smith-Waterman score: 1592; 68.8% identity (68.8% similar) in 400 aa overlap (1-400:1-275) 10 20 30 40 50 60 pF1KE4 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 SILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 LQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 NMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYY : CCDS69 N----------------------------------------------------------- 250 260 270 280 290 300 pF1KE4 TFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDV CCDS69 ------------------------------------------------------------ 310 320 330 340 350 360 pF1KE4 ELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLM :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 ------QEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLM 190 200 210 220 230 370 380 390 400 pF1KE4 LIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK :::::::::::::::::::::::::::::::::::::::: CCDS69 LIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK 240 250 260 270 >>CCDS33714.1 TBC1D5 gene_id:9779|Hs108|chr3 (795 aa) initn: 508 init1: 243 opt: 272 Z-score: 326.3 bits: 70.2 E(32554): 7.5e-12 Smith-Waterman score: 422; 26.8% identity (56.7% similar) in 381 aa overlap (23-400:69-415) 10 20 30 40 50 pF1KE4 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYL : .:. ...: . .: .:::..: : CCDS33 GRRTSSTLDSEGTFNSYRKEWEELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVL 40 50 60 70 80 90 60 70 80 90 100 110 pF1KE4 PLERASWTSILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNT : ....: : . . : :... . : .: :. :...:. . ..::. . : :: CCDS33 PQDKSQWISRIEELRAWYSNIKEIHITNP--RKV---VGQQDLMI-NNPLSQDEGSLWNK 100 110 120 130 140 150 120 130 140 150 160 170 pF1KE4 YFKDNEVLLQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTV .:.:.:. .:..::.: :...:::. . : . . .. :: :. CCDS33 FFQDKELRSMIEQDVKRTFPEMQFFQQENVRKIL-----TDVLFCYARENEQLLYKQGMH 160 170 180 190 200 180 190 200 210 220 230 pF1KE4 ARNRSGVTNMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMN : . :. . .: . . :. : .. .: . . : . . CCDS33 ELLAPIVFVLHCDHQAFLHASES---AQPS------EEMKTVLNPEYLEHDAYAVFSQLM 210 220 230 240 250 240 250 260 270 280 290 pF1KE4 EIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLD-DSQCGITYKMEKV : . : . :: : ... :: .::. : : . : .:. :.... CCDS33 ETAEPWFSTFEHD-GQKGKE-----------TLMTPI--PFARPQDLGPTIAIVTKVNQI 260 270 280 290 300 300 310 320 330 340 350 pF1KE4 YS-TLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDF . :: .:.:::..:.. .: ::....::. ::...:: : :.. .::.:::: . . CCDS33 QDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGLSLGL 310 320 330 340 350 360 360 370 380 390 400 pF1KE4 LLLVCCAMLMLIREQLLEGDFTVNMRLLQDYP-ITDVCQILQKAKELQDSK . . :::. ::. :. ... . . ::. :: : :: ... :: :.: : CCDS33 VDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRPVTYQ 370 380 390 400 410 420 CCDS33 FHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGGPVPG 430 440 450 460 470 480 >>CCDS46770.1 TBC1D5 gene_id:9779|Hs108|chr3 (817 aa) initn: 508 init1: 243 opt: 272 Z-score: 326.1 bits: 70.2 E(32554): 7.7e-12 Smith-Waterman score: 422; 26.8% identity (56.7% similar) in 381 aa overlap (23-400:69-415) 10 20 30 40 50 pF1KE4 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYL : .:. ...: . .: .:::..: : CCDS46 GRRTSSTLDSEGTFNSYRKEWEELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVL 40 50 60 70 80 90 60 70 80 90 100 110 pF1KE4 PLERASWTSILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNT : ....: : . . : :... . : .: :. :...:. . ..::. . : :: CCDS46 PQDKSQWISRIEELRAWYSNIKEIHITNP--RKV---VGQQDLMI-NNPLSQDEGSLWNK 100 110 120 130 140 150 120 130 140 150 160 170 pF1KE4 YFKDNEVLLQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTV .:.:.:. .:..::.: :...:::. . : . . .. :: :. CCDS46 FFQDKELRSMIEQDVKRTFPEMQFFQQENVRKIL-----TDVLFCYARENEQLLYKQGMH 160 170 180 190 200 180 190 200 210 220 230 pF1KE4 ARNRSGVTNMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMN : . :. . .: . . :. : .. .: . . : . . CCDS46 ELLAPIVFVLHCDHQAFLHASES---AQPS------EEMKTVLNPEYLEHDAYAVFSQLM 210 220 230 240 250 240 250 260 270 280 290 pF1KE4 EIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLD-DSQCGITYKMEKV : . : . :: : ... :: .::. : : . : .:. :.... CCDS46 ETAEPWFSTFEHD-GQKGKE-----------TLMTPI--PFARPQDLGPTIAIVTKVNQI 260 270 280 290 300 300 310 320 330 340 350 pF1KE4 YS-TLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDF . :: .:.:::..:.. .: ::....::. ::...:: : :.. .::.:::: . . CCDS46 QDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGLSLGL 310 320 330 340 350 360 360 370 380 390 400 pF1KE4 LLLVCCAMLMLIREQLLEGDFTVNMRLLQDYP-ITDVCQILQKAKELQDSK . . :::. ::. :. ... . . ::. :: : :: ... :: :.: : CCDS46 VDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRPVTYQ 370 380 390 400 410 420 CCDS46 FHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGGPVPG 430 440 450 460 470 480 400 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:31:39 2016 done: Sun Nov 6 03:31:39 2016 Total Scan time: 2.030 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]