FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4006, 126 aa 1>>>pF1KE4006 126 - 126 aa - 126 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5716+/-0.000553; mu= 10.6818+/- 0.033 mean_var=79.9072+/-15.795, 0's: 0 Z-trim(114.6): 17 B-trim: 14 in 1/51 Lambda= 0.143477 statistics sampled from 15149 (15166) to 15149 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.466), width: 16 Scan time: 1.850 The best scores are: opt bits E(32554) CCDS76271.1 RNF187 gene_id:149603|Hs108|chr1 ( 235) 842 182.6 1.1e-46 >>CCDS76271.1 RNF187 gene_id:149603|Hs108|chr1 (235 aa) initn: 842 init1: 842 opt: 842 Z-score: 951.9 bits: 182.6 E(32554): 1.1e-46 Smith-Waterman score: 842; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:110-235) 10 20 30 pF1KE4 MAAGPEPPEWEPRWRKALRGKENKGSVEIM :::::::::::::::::::::::::::::: CCDS76 AAPARDGPASEAALQLLCRADAGPLCAACRMAAGPEPPEWEPRWRKALRGKENKGSVEIM 80 90 100 110 120 130 40 50 60 70 80 90 pF1KE4 RKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 RKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEGL 140 150 160 170 180 190 100 110 120 pF1KE4 PEDELADPTERFRSLLQAVSELEKKHRNLGLSMLLQ :::::::::::::::::::::::::::::::::::: CCDS76 PEDELADPTERFRSLLQAVSELEKKHRNLGLSMLLQ 200 210 220 230 126 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:03:10 2016 done: Sun Nov 6 04:03:10 2016 Total Scan time: 1.850 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]