FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4180, 647 aa 1>>>pF1KE4180 647 - 647 aa - 647 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.3976+/-0.000972; mu= 9.6482+/- 0.058 mean_var=135.9690+/-28.295, 0's: 0 Z-trim(109.3): 47 B-trim: 407 in 1/51 Lambda= 0.109990 statistics sampled from 10768 (10801) to 10768 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.332), width: 16 Scan time: 3.440 The best scores are: opt bits E(32554) CCDS34715.1 LRWD1 gene_id:222229|Hs108|chr7 ( 647) 4366 704.8 9.4e-203 >>CCDS34715.1 LRWD1 gene_id:222229|Hs108|chr7 (647 aa) initn: 4366 init1: 4366 opt: 4366 Z-score: 3753.5 bits: 704.8 E(32554): 9.4e-203 Smith-Waterman score: 4366; 99.8% identity (100.0% similar) in 647 aa overlap (1-647:1-647) 10 20 30 40 50 60 pF1KE4 MGPLSARLLMQRGRPKSDRLGKIRSLDLSGLELLSEHLDPKLLCRLTQLQELDLSNNHLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MGPLSARLLMQRGRPKSDRLGKIRSLDLSGLELLSEHLDPKLLCRLTQLQELDLSNNHLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TLPDNLGLSHLRVLRCANNQLGDVTALCQFPKLEELSLEGNPFLTVNDNLKVSFLLPTLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 TLPDNLGLSHLRVLRCANNQLGDVTALCQFPKLEELSLEGNPFLTVNDNLKVSFLLPTLR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 KVNGKDASSTYSQVENLNRELTSRVTAHWEKFMATLGPEEEAEKAQADFVKSAVRDVRYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 KVNGKDASSTYSQVENLNRELTSRVTAHWEKFMATLGPEEEAEKAQADFVKSAVRDVRYG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 PESLSEFTQWRVRMISEELVAASRTQVQKANSPEKPPEAGAAHRPRARLAALKRPDDVPL :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: CCDS34 PESLSEFTQWRVRMISEELVAASRTQVQKANSPEKPPEAGAAHKPRARLAALKRPDDVPL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 SLSPSKRACASPSAQVEGSPVAGSDGSQPAVKLEPLHFLQCHSKNNSPQDLETQLWACAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 SLSPSKRACASPSAQVEGSPVAGSDGSQPAVKLEPLHFLQCHSKNNSPQDLETQLWACAF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 EPAWEEGATSQTVATCGGEAVCVIDCQTGIVLHKYKAPGEEFFSVAWTALMVVTQAGHKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 EPAWEEGATSQTVATCGGEAVCVIDCQTGIVLHKYKAPGEEFFSVAWTALMVVTQAGHKK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 RWSVLAAAGLRGLVRLLHVRAGFCCGVIRAHKKAIATLCFSPAHETHLFTASYDKRIILW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 RWSVLAAAGLRGLVRLLHVRAGFCCGVIRAHKKAIATLCFSPAHETHLFTASYDKRIILW 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 DIGVPNQDYEFQASQLLTLDTTSIPLRLCPVASCPDARLLAGCEGGCCCWDVRLDQPQKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 DIGVPNQDYEFQASQLLTLDTTSIPLRLCPVASCPDARLLAGCEGGCCCWDVRLDQPQKR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 RVCEVEFVFSEGSEASGRRVDGLAFVNEDIVASKGSGLGTICLWSWRQTWGGRGSQSTVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 RVCEVEFVFSEGSEASGRRVDGLAFVNEDIVASKGSGLGTICLWSWRQTWGGRGSQSTVA 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 VVVLARLQWSSTELAYFSLSACPDKGIVLCGDEEGNVWLYDVSNILKQPPLLPAALQAPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 VVVLARLQWSSTELAYFSLSACPDKGIVLCGDEEGNVWLYDVSNILKQPPLLPAALQAPT 550 560 570 580 590 600 610 620 630 640 pF1KE4 QILKWPQPWALGQVVTKTMVNTVVANASFTYLTALTDSNIVAIWGRM ::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 QILKWPQPWALGQVVTKTMVNTVVANASFTYLTALTDSNIVAIWGRM 610 620 630 640 647 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:09:14 2016 done: Sun Nov 6 04:09:15 2016 Total Scan time: 3.440 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]