Result of FASTA (ccds) for
pFN21AE4030
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4030, 237 aa
1>>>pF1KE4030 237 - 237 aa - 237 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0128+/-0.000917; mu= 8.5447+/- 0.055
mean_var=201.9369+/-42.766, 0's: 0 Z-trim(114.1): 88 B-trim: 550 in 1/50
Lambda= 0.090254
statistics sampled from 14629 (14722) to 14629 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.452), width: 16
Scan time: 2.430
The best scores are: opt bits E(32554)
CCDS10969.1 RNF166 gene_id:115992|Hs108|chr16 ( 237) 1695 232.4 2.1e-61
CCDS54056.1 RNF166 gene_id:115992|Hs108|chr16 ( 128) 902 128.8 1.7e-30
CCDS54057.1 RNF166 gene_id:115992|Hs108|chr16 ( 156) 853 122.5 1.6e-28
CCDS33482.1 RNF114 gene_id:55905|Hs108|chr20 ( 228) 752 109.5 1.9e-24
>>CCDS10969.1 RNF166 gene_id:115992|Hs108|chr16 (237 aa)
initn: 1695 init1: 1695 opt: 1695 Z-score: 1216.0 bits: 232.4 E(32554): 2.1e-61
Smith-Waterman score: 1695; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KE4 MAMFRSLVASAQQRQPPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAMFRSLVASAQQRQPPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 CLQVPSPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CLQVPSPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRV
130 140 150 160 170 180
190 200 210 220 230
pF1KE4 VCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN
190 200 210 220 230
>>CCDS54056.1 RNF166 gene_id:115992|Hs108|chr16 (128 aa)
initn: 902 init1: 902 opt: 902 Z-score: 661.0 bits: 128.8 E(32554): 1.7e-30
Smith-Waterman score: 902; 100.0% identity (100.0% similar) in 128 aa overlap (110-237:1-128)
80 90 100 110 120 130
pF1KE4 KVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTSQP
::::::::::::::::::::::::::::::
CCDS54 MRVHISSCLKVQEQMANCPKFVPVVPTSQP
10 20 30
140 150 160 170 180 190
pF1KE4 IPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSAN
40 50 60 70 80 90
200 210 220 230
pF1KE4 FLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN
::::::::::::::::::::::::::::::::::::::
CCDS54 FLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN
100 110 120
>>CCDS54057.1 RNF166 gene_id:115992|Hs108|chr16 (156 aa)
initn: 853 init1: 853 opt: 853 Z-score: 625.5 bits: 122.5 E(32554): 1.6e-28
Smith-Waterman score: 927; 65.8% identity (65.8% similar) in 237 aa overlap (1-237:1-156)
10 20 30 40 50 60
pF1KE4 MAMFRSLVASAQQRQPPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQP
:::::::::::::::::::::::::::::::::::::::
CCDS54 MAMFRSLVASAQQRQPPAGPAGGDSGLEAQYTCPICLEV---------------------
10 20 30
70 80 90 100 110 120
pF1KE4 CLQVPSPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKV
CCDS54 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE4 QEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRV
40 50 60 70 80 90
190 200 210 220 230
pF1KE4 VCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN
100 110 120 130 140 150
>>CCDS33482.1 RNF114 gene_id:55905|Hs108|chr20 (228 aa)
initn: 616 init1: 410 opt: 752 Z-score: 552.6 bits: 109.5 E(32554): 1.9e-24
Smith-Waterman score: 752; 45.2% identity (71.7% similar) in 230 aa overlap (10-234:2-225)
10 20 30 40 50
pF1KE4 MAMFRSLVASAQQRQ-----PPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCG
.::::. ::::. . : ...:::.:::::..:: . :::.::.
CCDS33 MAAQQRDCGGAAQLAGPAAEADPL-GRFTCPVCLEVYEKPVQV-PCGHVFCS
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 ECLQPCLQVPSPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHIS
::: ::. .:.: .:: . : .:...:.:. : .. :.:: :. :.:.: :..
CCDS33 ACLQECLKPKKPVCGVCRSALAPGV--RAVELERQIESTETSCHGCRKNFFLSKIRSHVA
60 70 80 90 100
120 130 140 150 160 170
pF1KE4 SCLKVQEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRS
.: : :. . . : .. .. : :.::: :: :::: .:.::. ::.:: : .
CCDS33 TCSKYQNYIMEGVK--ATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHST
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE4 DPNRVVCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLS
: . ::::::..::::::.:.:::: .:. .::.:::::::::..::: .. .: :.
CCDS33 DTKSVVCPICASMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSII
170 180 190 200 210 220
pF1KE4 EN
CCDS33 DQ
237 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:18:52 2016 done: Sun Nov 6 04:18:52 2016
Total Scan time: 2.430 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]