FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB0985, 310 aa 1>>>pF1KB0985 310 - 310 aa - 310 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1304+/-0.000332; mu= 7.9905+/- 0.021 mean_var=290.2448+/-57.254, 0's: 0 Z-trim(125.3): 224 B-trim: 0 in 0/53 Lambda= 0.075282 statistics sampled from 48352 (48619) to 48352 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.57), width: 16 Scan time: 9.530 The best scores are: opt bits E(85289) NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189) 314 46.1 6.7e-05 NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 312 46.3 0.00012 NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 308 45.7 0.00013 NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 301 45.0 0.00025 NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 292 44.0 0.00047 NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 289 43.5 0.00052 XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 293 44.3 0.00058 NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 290 43.8 0.00061 NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 284 43.0 0.00078 NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 284 43.0 0.00078 NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 284 43.2 0.00094 NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 287 43.8 0.00099 NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 281 42.8 0.0012 NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 277 42.2 0.0013 XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 276 42.1 0.0013 NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 276 42.2 0.0015 NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 276 42.2 0.0015 NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 276 42.3 0.0017 NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 276 42.3 0.0017 XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 276 42.3 0.0017 XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 276 42.4 0.0019 XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 276 42.4 0.0019 XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 276 42.4 0.0019 XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 276 42.4 0.0019 XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 276 42.4 0.0019 NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 276 42.4 0.0019 NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 271 41.5 0.0019 NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 273 41.9 0.002 NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 273 42.0 0.0021 XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023 XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023 XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023 XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023 XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023 XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023 XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023 XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023 XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 267 41.0 0.0024 XP_016868632 (OMIM: 610772) PREDICTED: homeobox pr ( 265) 269 41.4 0.0024 NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 269 41.4 0.0025 XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 272 42.0 0.0026 NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 268 41.4 0.003 NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 266 41.1 0.0031 XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 266 41.1 0.0031 NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 265 41.0 0.0033 XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 262 40.5 0.0035 NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 264 40.9 0.0036 XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 41.6 0.0036 XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 41.6 0.0036 XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 41.6 0.0036 >>NP_001158727 (OMIM: 142994,176450) motor neuron and pa (189 aa) initn: 408 init1: 271 opt: 314 Z-score: 209.0 bits: 46.1 E(85289): 6.7e-05 Smith-Waterman score: 314; 44.4% identity (64.4% similar) in 135 aa overlap (134-259:2-128) 110 120 130 140 150 160 pF1KB0 RERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPR-RRRLEPNCAK :: . : . :: :. . . . : .: NP_001 MGGLSTVGACPGILGAQQAQAQSNLLGKC-- 10 20 170 180 190 200 210 220 pF1KB0 PRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN :: ::::: .::. ::..:. ..::: .:...: :: :::::::::::::: :::... NP_001 -RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSK 30 40 50 60 70 80 230 240 250 260 270 pF1KB0 PGADGAAQVGGGAPQPGAAGGGGGGGSGGS--PG------PPGTGALHFQTFPSYSAANV . . ::: :::::.:.::. :: ::. : NP_001 KAKEQAAQ-----EAEKQKGGGGGAGKGGAEEPGAEELLGPPAPGDKGSGRRLRDLRDSD 90 100 110 120 130 140 280 290 300 310 pF1KB0 LFPSAASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL NP_001 PEEDEDEDDEDHFPYSNGASVHAASSDCSSEDDSPPPRPSHQPAPQ 150 160 170 180 >>NP_005506 (OMIM: 142994,176450) motor neuron and pancr (401 aa) initn: 271 init1: 271 opt: 312 Z-score: 204.2 bits: 46.3 E(85289): 0.00012 Smith-Waterman score: 312; 35.6% identity (53.4% similar) in 208 aa overlap (71-259:143-340) 50 60 70 80 90 pF1KB0 PAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAG---QAS----PLEGSEAEEEE : .: ::: ::. :. : : NP_005 PHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAA 120 130 140 150 160 170 100 110 120 130 140 pF1KB0 DAEDPRRPRLRERAARLLPGLARSPDAP----AGALASGEPCEDGGGGPVRSPPGSPGSP : ..: : .. . : : ::.. . . . .: . : : NP_005 AALAGQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGMIL--PKMPDFN 180 190 200 210 220 230 150 160 170 180 190 200 pF1KB0 RPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKI . : .: :: ::::: .::. ::..:. ..::: .:...: :: :::::::: NP_005 SQAQSNLLGKC---RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKI 240 250 260 270 280 210 220 230 240 250 260 pF1KB0 WFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGS--PG------PPGTGAL :::::: :::... . . ::: :::::.:.::. :: ::. : NP_005 WFQNRRMKWKRSKKAKEQAAQ-----EAEKQKGGGGGAGKGGAEEPGAEELLGPPAPGDK 290 300 310 320 330 340 270 280 290 300 310 pF1KB0 HFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL NP_005 GSGRRLRDLRDSDPEEDEDEDDEDHFPYSNGASVHAASSDCSSEDDSPPPRPSHQPAPQ 350 360 370 380 390 400 >>NP_000200 (OMIM: 125853,260370,600733,606176,606392) p (283 aa) initn: 302 init1: 223 opt: 308 Z-score: 203.5 bits: 45.7 E(85289): 0.00013 Smith-Waterman score: 311; 30.6% identity (50.3% similar) in 288 aa overlap (27-295:16-282) 10 20 30 40 50 60 pF1KB0 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS :: : :. :::. . . : . :.. NP_000 MNGEEQYYAATQLYKDPCAFQRG------PAPEFSASPPACLYMGRQPP 10 20 30 40 70 80 90 100 110 120 pF1KB0 SRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDA : : : : . :.:: . : : :.:: .:... ::. : NP_000 PPPP---HPFPGALG-ALEQGSPPDISPYEVPPLADDPAVAHLHHH----LPAQLALPHP 50 60 70 80 90 130 140 150 160 pF1KB0 PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNC-----------AKP---RRA ::: : .:. : :. : : . . . :.: .:. NP_000 PAG------PFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRT 100 110 120 130 140 170 180 190 200 210 220 pF1KB0 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ-NPGA :::.: ::. ::..: ..:.: .:..::. :.::: ..:::::::: ::::. . NP_000 RTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKR 150 160 170 180 190 200 230 240 250 260 270 280 pF1KB0 DGAAQVGGGA---PQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASF :.. ::::. :. : .: . : :: ::. . : . . : :. .. NP_000 GGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPGGAVP-PAAPVAAREGRLPPGLSAS 210 220 230 240 250 260 290 300 310 pF1KB0 PL-TAAAPGSPFAPFLGPSYLTPFYAPRL : ...:: : : NP_000 PQPSSVAPRRPQEPR 270 280 >>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa) initn: 231 init1: 231 opt: 301 Z-score: 198.8 bits: 45.0 E(85289): 0.00025 Smith-Waterman score: 313; 30.1% identity (54.1% similar) in 259 aa overlap (28-279:76-319) 10 20 30 40 50 pF1KB0 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPA--VRPAPREARKSLAEVEA :. . : :: . :: : . NP_002 PAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYR 50 60 70 80 90 100 60 70 80 90 100 110 pF1KB0 GKDASSRDPVRQLETPDAAGPGAG-QASPLEGSEAEE--EEDAEDPRRPRLRERAARLLP : . .: : . .: ::. : .:: . . . : : :: : .:: : NP_002 GGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPR-RCEAAPATP 110 120 130 140 150 160 120 130 140 150 160 170 pF1KB0 GLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP--NCAKPRRARTAF :. . .::: : .. : : . : : . . ..: : ..:.:.:::. NP_002 GVPAGGSAPACPLLLADKSPLGLKG--KEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAY 170 180 190 200 210 220 180 190 200 210 220 230 pF1KB0 TYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQ : .:.. ::..:. .:::. .:...: .: :.: :::::::::: ::::.. NP_002 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK------- 230 240 250 260 270 240 250 260 270 280 290 pF1KB0 VGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPG :. .......:.: :: : . :.. : :... . ::. NP_002 ----LPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPV-PSSI 280 290 300 310 320 300 310 pF1KB0 SPFAPFLGPSYLTPFYAPRL >>NP_002439 (OMIM: 106600,142983,189500,608874) homeobox (303 aa) initn: 305 init1: 234 opt: 292 Z-score: 193.8 bits: 44.0 E(85289): 0.00047 Smith-Waterman score: 309; 33.7% identity (51.2% similar) in 291 aa overlap (7-271:27-293) 10 20 30 40 pF1KB0 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVR ::: ::: . ... : . .: : : NP_002 MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGA-DEE----GAKPKVS 10 20 30 40 50 50 60 70 80 90 pF1KB0 PA--PREARKSLAE-VEAGKDASSRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAED :. : .. .:. . : :. : . .. ::: :.:.:: : . NP_002 PSLLPFSVEALMADHRKPGAKESALAPSEGVQ---AAG---GSAQPL-GVPPGSLGAPDA 60 70 80 90 100 100 110 120 130 140 150 pF1KB0 PRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSP-PGSPG-SPRPRRRR : :: . . :: . :. ::...: : : :.: :: :: : :: NP_002 PSSPR--PLGHFSVGGLLKLPE---DALVKAESPEK----PERTPWMQSPRFSPPPARRL 110 120 130 140 150 160 170 180 190 200 210 pF1KB0 LEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIW : :. :. :: :: ::.::: ::: .:::. :: ... :::::::::::: NP_002 SPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIW 160 170 180 190 200 210 220 230 240 250 pF1KB0 FQNRRTKWKKQN----------------PGADGAAQVGGGAPQPGAAGGGGGGGSGGSPG :::::.: :. . :.: : . :: :.:.....:.. :. : NP_002 FQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PAAVAAAAGASLYGASG 220 230 240 250 260 270 260 270 280 290 300 310 pF1KB0 PPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL : .:: :.: NP_002 PFQRAALPVAPVGLYTAHVGYSMYHLT 280 290 300 >>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa) initn: 286 init1: 258 opt: 289 Z-score: 193.0 bits: 43.5 E(85289): 0.00052 Smith-Waterman score: 304; 38.8% identity (61.2% similar) in 165 aa overlap (112-251:87-247) 90 100 110 120 130 pF1KB0 SPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLA-RSP-DAPAGAL--ASGEPCEDGGGG :::. :.: ::::: :. :: ... NP_076 RAACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSS 60 70 80 90 100 110 140 150 160 170 pF1KB0 PVRSPP--GSPGSPRPRR------------RRLE-----PNCA--KPRRARTAFTYEQLV : :: .: : : . :... :: : .:.:.:::.: .:.. NP_076 PP-PPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVL 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB0 ALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAP ::..:. .:::. .:...: .: :.: :.:::::::: ::::.. . . ::.: NP_076 ELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAA- 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB0 QPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPF :.::: : .:: NP_076 --GSAGGPPGRPNGGPRAL 240 250 >>XP_011523010 (OMIM: 142966) PREDICTED: homeobox protei (488 aa) initn: 256 init1: 256 opt: 293 Z-score: 192.1 bits: 44.3 E(85289): 0.00058 Smith-Waterman score: 311; 30.0% identity (52.9% similar) in 280 aa overlap (40-301:120-386) 10 20 30 40 50 60 pF1KB0 KAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLE : .: .: : : ... ..: .:. XP_011 ASGPLPQLGGTLGGCWGLLRVERLGCGWLRRRSPSLGRGSGAW-QSAPARTQRPAARRCP 90 100 110 120 130 140 70 80 90 100 110 120 pF1KB0 TPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPA---GALA :.. :. :: : :. : : : .:...: . .: .. .. . XP_011 RPSGRPHRRGDLSPAARSGARCEYILCLPVLP---SSVAKIFPWMKESRQTSKLKNNSPG 150 160 170 180 190 200 130 140 150 160 170 180 pF1KB0 SGEPCEDGGGGPV---RSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFR ..: : :::: . :. :. . :. : .:::::.: ::: ::..:. XP_011 TAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFH 210 220 230 240 250 260 190 200 210 220 230 pF1KB0 ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGA------PQ .::: .:...: :.:.: :.:::::::: :.:: . : : :. .:: :: XP_011 FNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK-DQKAKGLASSSGGPSPAGSPPQ 270 280 290 300 310 320 240 250 260 270 280 290 pF1KB0 PGAAGGGGGGG------SGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGS : . .: .. : ::.::. : : ... .:: . :: . . . XP_011 PMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYA--------LPSNYQPPLKGCGAPQ 330 340 350 360 370 300 310 pF1KB0 PFAPFLGPSYLTPFYAPRL . : .: : XP_011 KYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHH 380 390 400 410 420 430 >>NP_001092304 (OMIM: 603354) homeobox protein GBX-1 [Ho (363 aa) initn: 238 init1: 238 opt: 290 Z-score: 191.8 bits: 43.8 E(85289): 0.00061 Smith-Waterman score: 292; 33.6% identity (53.2% similar) in 220 aa overlap (35-224:104-322) 10 20 30 40 50 60 pF1KB0 QDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDP :::. : .: . :. :. :.. NP_001 APLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPP-DAFYGPQELAAAAAAAAATA 80 90 100 110 120 130 70 80 90 100 110 pF1KB0 VRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARL-LPGLARSPD---- .:. : . : .: . :. . : :.. : : : . : : NP_001 ARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKL 140 150 160 170 180 190 120 130 140 150 160 pF1KB0 -APAGALASGEPCEDGGGGP------VRSPPGSPGS---PRPRRR--------RLEPNCA : :: :..: :.:.:: . : :.::. :.:. . . : : NP_001 EASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTA 200 210 220 230 240 250 170 180 190 200 210 pF1KB0 -------KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNR : :: ::::: :::. ::..:. .:::. :: ..: .:.:.:.::::::::: NP_001 GVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNR 260 270 280 290 300 310 220 230 240 250 260 270 pF1KB0 RTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANV :.:::. . : NP_001 RAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP 320 330 340 350 360 >>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa) initn: 262 init1: 208 opt: 284 Z-score: 189.8 bits: 43.0 E(85289): 0.00078 Smith-Waterman score: 284; 33.0% identity (58.3% similar) in 206 aa overlap (64-265:63-249) 40 50 60 70 80 90 pF1KB0 AALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQA-SPLEGSEAEEE : :: . ::: ... .: .... . : NP_705 SPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPE 40 50 60 70 80 90 100 110 120 130 140 150 pF1KB0 EDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPV-RSPPGSPGSPRP . : : : : : . :: .:: : ..: : .. . ..: : . NP_705 ------KSQSLCEPAP--LSGASASP-SPAPP-ACSQPAPDHPSSAASKQPIVYPWMKKI 100 110 120 130 140 160 170 180 190 200 pF1KB0 RRRRLEPNC--AKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKI . ..:: ..:.:.:::.: .:.. ::..:. .:::. .:...: :: :.: :.:: NP_705 HVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKI 150 160 170 180 190 200 210 220 230 240 250 260 pF1KB0 WFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSY :::::: ::::.. . .. .:: ::: : : . :::. : :. NP_705 WFQNRRMKWKKDHRLPNTKVR---SAPPAGAAP------STLSAATPGTSEDHSQSATPP 210 220 230 240 250 270 280 290 300 310 pF1KB0 SAANVLFPSAASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL NP_705 EQQRAEDITRL 260 >>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa) initn: 262 init1: 208 opt: 284 Z-score: 189.8 bits: 43.0 E(85289): 0.00078 Smith-Waterman score: 284; 33.0% identity (58.3% similar) in 206 aa overlap (64-265:63-249) 40 50 60 70 80 90 pF1KB0 AALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQA-SPLEGSEAEEE : :: . ::: ... .: .... . : NP_055 SPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPE 40 50 60 70 80 90 100 110 120 130 140 150 pF1KB0 EDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPV-RSPPGSPGSPRP . : : : : : . :: .:: : ..: : .. . ..: : . NP_055 ------KSQSLCEPAP--LSGASASP-SPAPP-ACSQPAPDHPSSAASKQPIVYPWMKKI 100 110 120 130 140 160 170 180 190 200 pF1KB0 RRRRLEPNC--AKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKI . ..:: ..:.:.:::.: .:.. ::..:. .:::. .:...: :: :.: :.:: NP_055 HVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKI 150 160 170 180 190 200 210 220 230 240 250 260 pF1KB0 WFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSY :::::: ::::.. . .. .:: ::: : : . :::. : :. NP_055 WFQNRRMKWKKDHRLPNTKVR---SAPPAGAAP------STLSAATPGTSEDHSQSATPP 210 220 230 240 250 270 280 290 300 310 pF1KB0 SAANVLFPSAASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL NP_055 EQQRAEDITRL 260 310 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:36:40 2016 done: Sun Nov 6 04:36:42 2016 Total Scan time: 9.530 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]