FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3102, 269 aa 1>>>pF1KE3102 269 - 269 aa - 269 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2168+/-0.000731; mu= 16.2936+/- 0.044 mean_var=73.4575+/-15.091, 0's: 0 Z-trim(110.0): 14 B-trim: 636 in 1/50 Lambda= 0.149643 statistics sampled from 11304 (11313) to 11304 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.348), width: 16 Scan time: 2.220 The best scores are: opt bits E(32554) CCDS65554.1 TM2D1 gene_id:83941|Hs108|chr1 ( 207) 1418 314.7 3.3e-86 CCDS10392.1 TM2D3 gene_id:80213|Hs108|chr15 ( 221) 260 64.8 6.2e-11 CCDS10393.1 TM2D3 gene_id:80213|Hs108|chr15 ( 247) 260 64.8 6.8e-11 >>CCDS65554.1 TM2D1 gene_id:83941|Hs108|chr1 (207 aa) initn: 1418 init1: 1418 opt: 1418 Z-score: 1661.2 bits: 314.7 E(32554): 3.3e-86 Smith-Waterman score: 1418; 100.0% identity (100.0% similar) in 207 aa overlap (63-269:1-207) 40 50 60 70 80 90 pF1KE3 PFKNLALLPFSLPLLGGGGSGSGEKVSVSKMAAAWPSGPSAPEAVTARLVGVLWFVSVTT :::::::::::::::::::::::::::::: CCDS65 MAAAWPSGPSAPEAVTARLVGVLWFVSVTT 10 20 30 100 110 120 130 140 150 pF1KE3 GPWGAVATSAGGEESLKCEDLKVGQYICKDPKINDATQEPVNCTNYTAHVSCFPAPNITC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 GPWGAVATSAGGEESLKCEDLKVGQYICKDPKINDATQEPVNCTNYTAHVSCFPAPNITC 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE3 KDSSGNETHFTGNEVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFYLGYPALGLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 KDSSGNETHFTGNEVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFYLGYPALGLLK 100 110 120 130 140 150 220 230 240 250 260 pF1KE3 FCTVGFCGIGSLIDFILISMQIVGPSDGSSYIIDYYGTRLTRLSITNETFRKTQLYP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 FCTVGFCGIGSLIDFILISMQIVGPSDGSSYIIDYYGTRLTRLSITNETFRKTQLYP 160 170 180 190 200 >>CCDS10392.1 TM2D3 gene_id:80213|Hs108|chr15 (221 aa) initn: 244 init1: 223 opt: 260 Z-score: 309.7 bits: 64.8 E(32554): 6.2e-11 Smith-Waterman score: 260; 45.7% identity (66.4% similar) in 116 aa overlap (135-244:112-221) 110 120 130 140 150 pF1KE3 EESLKCEDLKVGQYICKDPKINDATQEPVNCTNYTA--HVSC----FPAPNITCKDSSGN ::: :. ::: .:: : : .: CCDS10 CVDQDFKSQKNFIINMTCRFCWQLPETDYECTNSTSCMTVSCPRQRYPA-NCTVRD---- 90 100 110 120 130 160 170 180 190 200 210 pF1KE3 ETHFTGNEVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFYLGYPALGLLKFCTVGF ..: ::.. : : . : ..::....:.:::. :: .:::::::: :: :. . : CCDS10 HVHCLGNRT-FPKMLYCNWTGGYKWSTALALSITLGGFGADRFYLGQWREGLGKLFSFGG 140 150 160 170 180 190 220 230 240 250 260 pF1KE3 CGIGSLIDFILISMQIVGPSDGSSYIIDYYGTRLTRLSITNETFRKTQLYP :: .::: .::.. :::.::: :: CCDS10 LGIWTLIDVLLIGVGYVGPADGSLYI 200 210 220 >>CCDS10393.1 TM2D3 gene_id:80213|Hs108|chr15 (247 aa) initn: 244 init1: 223 opt: 260 Z-score: 309.1 bits: 64.8 E(32554): 6.8e-11 Smith-Waterman score: 260; 45.7% identity (66.4% similar) in 116 aa overlap (135-244:138-247) 110 120 130 140 150 pF1KE3 EESLKCEDLKVGQYICKDPKINDATQEPVNCTNYTA--HVSC----FPAPNITCKDSSGN ::: :. ::: .:: : : .: CCDS10 CVDQDFKSQKNFIINMTCRFCWQLPETDYECTNSTSCMTVSCPRQRYPA-NCTVRD---- 110 120 130 140 150 160 160 170 180 190 200 210 pF1KE3 ETHFTGNEVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFYLGYPALGLLKFCTVGF ..: ::.. : : . : ..::....:.:::. :: .:::::::: :: :. . : CCDS10 HVHCLGNRT-FPKMLYCNWTGGYKWSTALALSITLGGFGADRFYLGQWREGLGKLFSFGG 170 180 190 200 210 220 220 230 240 250 260 pF1KE3 CGIGSLIDFILISMQIVGPSDGSSYIIDYYGTRLTRLSITNETFRKTQLYP :: .::: .::.. :::.::: :: CCDS10 LGIWTLIDVLLIGVGYVGPADGSLYI 230 240 269 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:50:34 2016 done: Sun Nov 6 04:50:34 2016 Total Scan time: 2.220 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]