FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3088, 215 aa 1>>>pF1KE3088 215 - 215 aa - 215 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.1716+/-0.0005; mu= -8.4931+/- 0.031 mean_var=274.5848+/-56.540, 0's: 0 Z-trim(115.9): 7 B-trim: 333 in 1/55 Lambda= 0.077399 statistics sampled from 26722 (26728) to 26722 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.313), width: 16 Scan time: 6.510 The best scores are: opt bits E(85289) NP_001165358 (OMIM: 608858) FGFR1 oncogene partner ( 215) 1337 162.1 6.1e-40 NP_001165359 (OMIM: 608858) FGFR1 oncogene partner ( 172) 831 105.6 5.2e-23 NP_056448 (OMIM: 608858) FGFR1 oncogene partner 2 ( 253) 831 105.7 7.1e-23 NP_079349 (OMIM: 611656) suppressor of IKBKE 1 iso ( 207) 667 87.3 2e-17 NP_001095866 (OMIM: 611656) suppressor of IKBKE 1 ( 211) 654 85.9 5.5e-17 >>NP_001165358 (OMIM: 608858) FGFR1 oncogene partner 2 i (215 aa) initn: 1337 init1: 1337 opt: 1337 Z-score: 838.1 bits: 162.1 E(85289): 6.1e-40 Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215) 10 20 30 40 50 60 pF1KE3 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREIL 130 140 150 160 170 180 190 200 210 pF1KE3 QITRESFLNLRKDDASESTSLSALVTNSDLSLRKS ::::::::::::::::::::::::::::::::::: NP_001 QITRESFLNLRKDDASESTSLSALVTNSDLSLRKS 190 200 210 >>NP_001165359 (OMIM: 608858) FGFR1 oncogene partner 2 i (172 aa) initn: 828 init1: 828 opt: 831 Z-score: 534.1 bits: 105.6 E(85289): 5.2e-23 Smith-Waterman score: 831; 95.0% identity (97.9% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 pF1KE3 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREIL :::::::::::: ..: .. NP_001 GIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNVH 130 140 150 160 170 >>NP_056448 (OMIM: 608858) FGFR1 oncogene partner 2 isof (253 aa) initn: 828 init1: 828 opt: 831 Z-score: 531.7 bits: 105.7 E(85289): 7.1e-23 Smith-Waterman score: 1218; 84.6% identity (84.6% similar) in 247 aa overlap (1-209:1-247) 10 20 30 40 50 60 pF1KE3 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP 70 80 90 100 110 120 130 140 pF1KE3 GIIMKLKEQHSK--------------------------------------ELQAHVDQIT :::::::::::: :::::::::: NP_056 GIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQIT 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE3 EMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 EMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLS 190 200 210 220 230 240 210 pF1KE3 ALVTNSDLSLRKS ::::::: NP_056 ALVTNSDLSLRKS 250 >>NP_079349 (OMIM: 611656) suppressor of IKBKE 1 isoform (207 aa) initn: 740 init1: 441 opt: 667 Z-score: 434.0 bits: 87.3 E(85289): 2e-17 Smith-Waterman score: 667; 51.4% identity (81.2% similar) in 208 aa overlap (1-200:1-203) 10 20 30 40 50 pF1KE3 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE ::::::: :.:::.:.::::.:: :::::..:..::..:: ::. ::::. .. NP_079 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL ........:. : .::: :::.:::::.:: ::::::.::::::::::.::..:. NP_079 MKDMSKYKPHILL----SQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLM 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 MASKKDDPGIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQE .:.: : ..: ...:: :.....:.: ::. :::::...:..: :: ::.. ::: : NP_079 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELE 120 130 140 150 160 170 180 190 200 210 pF1KE3 NKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS :: :::.:.:. :: :. ::... ...: NP_079 NKELRELLSISSES-LQARKENSMDTASQAIK 180 190 200 >>NP_001095866 (OMIM: 611656) suppressor of IKBKE 1 isof (211 aa) initn: 690 init1: 441 opt: 654 Z-score: 426.0 bits: 85.9 E(85289): 5.5e-17 Smith-Waterman score: 654; 50.0% identity (79.7% similar) in 212 aa overlap (1-200:1-207) 10 20 30 40 pF1KE3 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQ------------YQE ::::::: :.:::.:.::::.:: :::::..:..::..:: ::.. ::: NP_001 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQVRQRYQE 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 EIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQM . ..........:. : .::: :::.:::::.:: ::::::.::::::::::.:: NP_001 DASDMKDMSKYKPHILL----SQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQM 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 FRLLMASKKDDPGIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQ ..:..:.: : ..: ...:: :.....:.: ::. :::::...:..: :: ::.. : NP_001 LQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQ 120 130 140 150 160 170 170 180 190 200 210 pF1KE3 LEQENKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS :: ::: :::.:.:. :: :. ::... ...: NP_001 LELENKELRELLSISSES-LQARKENSMDTASQAIK 180 190 200 210 215 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:14:32 2016 done: Sun Nov 6 05:14:33 2016 Total Scan time: 6.510 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]