FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7963, 292 aa 1>>>pF1KB7963 292 - 292 aa - 292 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0751+/-0.00104; mu= 15.8669+/- 0.063 mean_var=60.0112+/-11.691, 0's: 0 Z-trim(102.6): 25 B-trim: 2 in 1/48 Lambda= 0.165561 statistics sampled from 7019 (7038) to 7019 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.547), E-opt: 0.2 (0.216), width: 16 Scan time: 2.120 The best scores are: opt bits E(32554) CCDS32682.1 NME2 gene_id:654364|Hs108|chr17 ( 267) 1807 440.3 7.1e-124 CCDS11580.1 NME2 gene_id:4831|Hs108|chr17 ( 152) 1031 254.9 2.8e-68 CCDS11578.1 NME1 gene_id:4830|Hs108|chr17 ( 177) 939 232.9 1.3e-61 CCDS11579.1 NME1 gene_id:4830|Hs108|chr17 ( 152) 928 230.3 7e-61 CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 ( 169) 711 178.4 3.1e-45 CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 ( 187) 609 154.1 7.2e-38 CCDS74107.1 NME2 gene_id:4831|Hs108|chr17 ( 82) 503 128.6 1.5e-30 CCDS66886.1 NME4 gene_id:4833|Hs108|chr16 ( 117) 448 115.5 1.8e-26 CCDS73797.1 NME4 gene_id:4833|Hs108|chr16 ( 153) 282 76.0 2e-14 CCDS4197.1 NME5 gene_id:8382|Hs108|chr5 ( 212) 247 67.7 8.6e-12 CCDS2763.1 NME6 gene_id:10201|Hs108|chr3 ( 194) 245 67.2 1.1e-11 CCDS77734.1 NME6 gene_id:10201|Hs108|chr3 ( 186) 243 66.7 1.5e-11 >>CCDS32682.1 NME2 gene_id:654364|Hs108|chr17 (267 aa) initn: 1807 init1: 1807 opt: 1807 Z-score: 2337.5 bits: 440.3 E(32554): 7.1e-124 Smith-Waterman score: 1807; 100.0% identity (100.0% similar) in 267 aa overlap (26-292:1-267) 10 20 30 40 50 60 pF1KB7 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL ::::::::::::::::::::::::::::::::::: CCDS32 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL 10 20 30 70 80 90 100 110 120 pF1KB7 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN 40 50 60 70 80 90 130 140 150 160 170 180 pF1KB7 PADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKF 100 110 120 130 140 150 190 200 210 220 230 240 pF1KB7 LRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK 160 170 180 190 200 210 250 260 270 280 290 pF1KB7 PGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 220 230 240 250 260 >>CCDS11580.1 NME2 gene_id:4831|Hs108|chr17 (152 aa) initn: 1031 init1: 1031 opt: 1031 Z-score: 1339.4 bits: 254.9 E(32554): 2.8e-68 Smith-Waterman score: 1031; 100.0% identity (100.0% similar) in 152 aa overlap (141-292:1-152) 120 130 140 150 160 170 pF1KB7 TGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQ :::::::::::::::::::::::::::::: CCDS11 MANLERTFIAIKPDGVQRGLVGEIIKRFEQ 10 20 30 180 190 200 210 220 230 pF1KB7 KGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVM 40 50 60 70 80 90 240 250 260 270 280 290 pF1KB7 LGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWV 100 110 120 130 140 150 pF1KB7 YE :: CCDS11 YE >>CCDS11578.1 NME1 gene_id:4830|Hs108|chr17 (177 aa) initn: 939 init1: 939 opt: 939 Z-score: 1219.7 bits: 232.9 E(32554): 1.3e-61 Smith-Waterman score: 939; 98.6% identity (100.0% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KB7 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 PADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKF :::::::::::::::::::.. CCDS11 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 130 140 150 160 170 >>CCDS11579.1 NME1 gene_id:4830|Hs108|chr17 (152 aa) initn: 928 init1: 928 opt: 928 Z-score: 1206.5 bits: 230.3 E(32554): 7e-61 Smith-Waterman score: 928; 88.2% identity (97.4% similar) in 152 aa overlap (141-292:1-152) 120 130 140 150 160 170 pF1KB7 TGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQ ::: :::::::::::::::::::::::::: CCDS11 MANCERTFIAIKPDGVQRGLVGEIIKRFEQ 10 20 30 180 190 200 210 220 230 pF1KB7 KGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVM ::::::..::..:::. ::.::.:::::::: ::::::.::::::::::::::::::::: CCDS11 KGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVM 40 50 60 70 80 90 240 250 260 270 280 290 pF1KB7 LGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWV :::::::::::::::::::::::::::::::::.::::::.:::.::::::: :::..:. CCDS11 LGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWI 100 110 120 130 140 150 pF1KB7 YE :: CCDS11 YE >>CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 (169 aa) initn: 711 init1: 711 opt: 711 Z-score: 925.7 bits: 178.4 E(32554): 3.1e-45 Smith-Waterman score: 711; 65.5% identity (91.2% similar) in 148 aa overlap (145-292:22-169) 120 130 140 150 160 170 pF1KB7 MLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR ::::.:.::::::: :::::..:::.:::. CCDS10 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK 10 20 30 40 50 180 190 200 210 220 230 pF1KB7 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET :::.:...:::: :..:: .:..:::. ::::: :::::::::.::.::.:.:...: : CCDS10 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT 60 70 80 90 100 110 240 250 260 270 280 290 pF1KB7 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE ::::. ::::::::::.::.:.:::::::.::..::.:::. .::. ... : :.:: CCDS10 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 120 130 140 150 160 >>CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 (187 aa) initn: 1093 init1: 609 opt: 609 Z-score: 793.3 bits: 154.1 E(32554): 7.2e-38 Smith-Waterman score: 609; 59.4% identity (89.9% similar) in 138 aa overlap (145-282:38-175) 120 130 140 150 160 170 pF1KB7 MLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR :::..:.::::::: :::..:.:::..:: CCDS10 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT 10 20 30 40 50 60 180 190 200 210 220 230 pF1KB7 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET ::.::.:.: : : .:: ::. .::.:.:..::.::::::::::: :::...:.:.:.: CCDS10 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT 70 80 90 100 110 120 240 250 260 270 280 290 pF1KB7 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE . :.. :::::::: ....::.::.::::..:..::.:::. :::.. CCDS10 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA 130 140 150 160 170 180 >>CCDS74107.1 NME2 gene_id:4831|Hs108|chr17 (82 aa) initn: 503 init1: 503 opt: 503 Z-score: 661.9 bits: 128.6 E(32554): 1.5e-30 Smith-Waterman score: 503; 100.0% identity (100.0% similar) in 76 aa overlap (141-216:1-76) 120 130 140 150 160 170 pF1KB7 TGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQ :::::::::::::::::::::::::::::: CCDS74 MANLERTFIAIKPDGVQRGLVGEIIKRFEQ 10 20 30 180 190 200 210 220 230 pF1KB7 KGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVM :::::::::::::::::::::::::::::::::::::::::::::: CCDS74 KGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMEHHSWQ 40 50 60 70 80 240 250 260 270 280 290 pF1KB7 LGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWV >>CCDS66886.1 NME4 gene_id:4833|Hs108|chr16 (117 aa) initn: 751 init1: 448 opt: 448 Z-score: 588.6 bits: 115.5 E(32554): 1.8e-26 Smith-Waterman score: 448; 57.1% identity (88.6% similar) in 105 aa overlap (178-282:1-105) 150 160 170 180 190 200 pF1KB7 FIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKY ::.:.: : : .:: ::. .::.:.:..: CCDS66 MKMLQAPESVLAEHYQDLRRKPFYPALIRY 10 20 30 210 220 230 240 250 260 pF1KB7 MNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAE :.::::::::::: :::...:.:.:.:. :.. :::::::: ....::.::.::::..:. CCDS66 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ 40 50 60 70 80 90 270 280 290 pF1KB7 KEISLWFKPEELVDYKSCAHDWVYE .::.:::. :::.. CCDS66 REIQLWFQSSELVSWADGGQHSSIHPA 100 110 >>CCDS73797.1 NME4 gene_id:4833|Hs108|chr16 (153 aa) initn: 608 init1: 281 opt: 282 Z-score: 372.5 bits: 76.0 E(32554): 2e-14 Smith-Waterman score: 383; 44.9% identity (69.6% similar) in 138 aa overlap (145-282:38-141) 120 130 140 150 160 170 pF1KB7 MLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR :::..:.::::::: :::..:.:::..:: CCDS73 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT 10 20 30 40 50 60 180 190 200 210 220 230 pF1KB7 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET ::.::.:. :::: :::...:.:.:.: CCDS73 LVGMKMLQ----------------------------------VWEGYNVVRASRAMIGHT 70 80 90 240 250 260 270 280 290 pF1KB7 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE . :.. :::::::: ....::.::.::::..:..::.:::. :::.. CCDS73 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA 100 110 120 130 140 150 >>CCDS4197.1 NME5 gene_id:8382|Hs108|chr5 (212 aa) initn: 212 init1: 136 opt: 247 Z-score: 325.2 bits: 67.7 E(32554): 8.6e-12 Smith-Waterman score: 247; 33.8% identity (64.1% similar) in 142 aa overlap (144-281:12-149) 120 130 140 150 160 170 pF1KB7 VMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGL-VGEIIKRFEQKG .:.:. :::: :.. . .:: : .: CCDS41 MEISMPPPQIYVEKTLAIIKPDIVDKEEEIQDIILR---SG 10 20 30 180 190 200 210 220 230 pF1KB7 FRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLG : .: . :: : :. .. :.. . :::.:. ::.:::.:::. .... .:: CCDS41 FTIVQRRKLRLSPEQCSNFYVEKYGKMFFPNLTAYMSSGPLVAMILARHKAISYWLELLG 40 50 60 70 80 90 240 250 260 270 280 pF1KB7 ETNP---ADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDW .: ...: ..:. . . :: .:::.. .::.:: . : :: .:. CCDS41 PNNSLVAKETHPDSLRAIYGTDDLRNALHGSNDFAAAEREIRFMF-PEVIVEPIPIGQAA 100 110 120 130 140 150 290 pF1KB7 VYE CCDS41 KDYLNLHIMPTLLEGLTELCKQKPADPLIWLADWLLKNNPNKPKLCHHPIVEEPY 160 170 180 190 200 210 292 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:47:30 2016 done: Sun Nov 6 05:47:31 2016 Total Scan time: 2.120 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]