Result of FASTA (ccds) for
pFN21AE3066
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3066, 221 aa
1>>>pF1KE3066 221 - 221 aa - 221 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5276+/-0.00103; mu= 12.4831+/- 0.062
mean_var=81.0632+/-16.316, 0's: 0 Z-trim(105.7): 196 B-trim: 211 in 2/49
Lambda= 0.142450
statistics sampled from 8321 (8553) to 8321 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.263), width: 16
Scan time: 1.870
The best scores are: opt bits E(32554)
CCDS33961.1 RAB28 gene_id:9364|Hs108|chr4 ( 221) 1444 306.4 9.3e-84
CCDS3409.1 RAB28 gene_id:9364|Hs108|chr4 ( 220) 1316 280.1 7.6e-76
CCDS54741.1 RAB28 gene_id:9364|Hs108|chr4 ( 204) 1243 265.1 2.4e-71
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15 ( 216) 371 85.9 2.2e-17
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 366 84.8 4.2e-17
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19 ( 218) 358 83.2 1.4e-16
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 350 81.5 4.2e-16
CCDS41413.1 RAB25 gene_id:57111|Hs108|chr1 ( 213) 349 81.4 5e-16
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18 ( 244) 345 80.6 9.8e-16
CCDS560.1 RAB3B gene_id:5865|Hs108|chr1 ( 219) 344 80.3 1e-15
CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5 ( 227) 343 80.1 1.2e-15
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19 ( 219) 336 78.7 3.2e-15
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 334 78.2 4e-15
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 334 78.3 4.1e-15
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19 ( 220) 333 78.1 5e-15
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8 ( 212) 332 77.9 5.6e-15
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 ( 208) 331 77.6 6.3e-15
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 330 77.4 7.3e-15
CCDS14156.1 RAB9A gene_id:9367|Hs108|chrX ( 201) 329 77.2 8.2e-15
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 329 77.2 8.4e-15
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 327 76.8 1.1e-14
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19 ( 213) 327 76.8 1.1e-14
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 326 76.6 1.3e-14
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14 ( 216) 326 76.6 1.3e-14
CCDS58373.1 RAB11A gene_id:8766|Hs108|chr15 ( 155) 324 76.1 1.4e-14
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 323 76.0 1.9e-14
CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3 ( 207) 323 76.0 2e-14
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9 ( 215) 323 76.0 2e-14
CCDS73011.1 RAB7B gene_id:338382|Hs108|chr1 ( 199) 322 75.8 2.2e-14
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10 ( 206) 322 75.8 2.3e-14
CCDS14515.1 RAB9B gene_id:51209|Hs108|chrX ( 201) 321 75.6 2.6e-14
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 320 75.4 3.1e-14
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17 ( 223) 318 75.0 4.3e-14
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 317 74.8 5.5e-14
CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2 ( 254) 316 74.6 6.3e-14
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1 ( 218) 315 74.4 6.4e-14
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 ( 196) 314 74.1 6.8e-14
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17 ( 228) 314 74.2 7.7e-14
CCDS46408.1 RAB6C gene_id:84084|Hs108|chr2 ( 254) 312 73.8 1.1e-13
CCDS11240.1 RAB34 gene_id:83871|Hs108|chr17 ( 259) 307 72.8 2.3e-13
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 304 72.1 2.9e-13
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16 ( 190) 302 71.7 3.7e-13
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 302 71.7 4e-13
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12 ( 215) 299 71.1 6.2e-13
CCDS5210.1 RAB32 gene_id:10981|Hs108|chr6 ( 225) 299 71.1 6.4e-13
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 ( 215) 297 70.7 8.2e-13
CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX ( 221) 297 70.7 8.4e-13
CCDS1459.1 RAB29 gene_id:8934|Hs108|chr1 ( 203) 296 70.4 9.1e-13
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 ( 216) 296 70.5 9.5e-13
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 ( 249) 296 70.5 1.1e-12
>>CCDS33961.1 RAB28 gene_id:9364|Hs108|chr4 (221 aa)
initn: 1444 init1: 1444 opt: 1444 Z-score: 1617.2 bits: 306.4 E(32554): 9.3e-84
Smith-Waterman score: 1444; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE3 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
130 140 150 160 170 180
190 200 210 220
pF1KE3 KLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVQ
:::::::::::::::::::::::::::::::::::::::::
CCDS33 KLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVQ
190 200 210 220
>>CCDS3409.1 RAB28 gene_id:9364|Hs108|chr4 (220 aa)
initn: 1296 init1: 1296 opt: 1316 Z-score: 1475.1 bits: 280.1 E(32554): 7.6e-76
Smith-Waterman score: 1316; 91.9% identity (97.3% similar) in 221 aa overlap (1-221:1-220)
10 20 30 40 50 60
pF1KE3 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
130 140 150 160 170 180
190 200 210 220
pF1KE3 KLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVQ
::::::::::::.:.:.::.: .: ..:.. .: .:.::
CCDS34 KLNKAEIEQSQRIVRAEIVKYPEEENQHTTST-QSRICSVQ
190 200 210 220
>>CCDS54741.1 RAB28 gene_id:9364|Hs108|chr4 (204 aa)
initn: 1243 init1: 1243 opt: 1243 Z-score: 1394.5 bits: 265.1 E(32554): 2.4e-71
Smith-Waterman score: 1243; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KE3 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
130 140 150 160 170 180
190 200 210 220
pF1KE3 KLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVQ
:::::::::::
CCDS54 KLNKAEIEQSQGHFIIFISSTNRE
190 200
>>CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15 (216 aa)
initn: 317 init1: 137 opt: 371 Z-score: 425.6 bits: 85.9 E(32554): 2.2e-17
Smith-Waterman score: 371; 30.9% identity (64.5% similar) in 217 aa overlap (4-218:3-213)
10 20 30 40 50 60
pF1KE3 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
.... : .:.:..::.. ::..: . :... :. . :.:::..: : : . :.
CCDS10 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK-
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
.. :::: .:: . . : :: :.::::::... ..::.: : .:.. .....
CCDS10 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW---LKELRDHADS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
. .. ::::: ::.:.:.. .. : ..::.: .:: . .: :: . .:: :
CCDS10 NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI
120 130 140 150 160 170
190 200 210 220
pF1KE3 KLNK--AEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVQ
.: .. .... . ..: . : : : :. . :
CCDS10 VSQKQMSDRRENDMSPSNNVVPIHVPP--TTENKPKVQCCQNI
180 190 200 210
>>CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 (203 aa)
initn: 347 init1: 166 opt: 366 Z-score: 420.4 bits: 84.8 E(32554): 4.2e-17
Smith-Waterman score: 366; 34.9% identity (69.2% similar) in 172 aa overlap (7-178:3-170)
10 20 30 40 50 60
pF1KE3 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
.. :. .:....::.. ::: : ::...:.. : .:::.:: .: . . :.
CCDS10 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGK-
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
.. ::.:: .:: . : ::.:..::::::. .::::...: .:...:.. .
CCDS10 KIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW---MKSIKENASA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
:.::: :.: : .. :. .. .:.:. .:::.. .: :...: .::
CCDS10 GVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK
120 130 140 150 160 170
190 200 210 220
pF1KE3 KLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVQ
CCDS10 SGGRRSGNGNKPPSTDLKTCDKKNTNKCSLG
180 190 200
>>CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19 (218 aa)
initn: 304 init1: 137 opt: 358 Z-score: 411.1 bits: 83.2 E(32554): 1.4e-16
Smith-Waterman score: 358; 29.5% identity (64.1% similar) in 217 aa overlap (4-218:3-215)
10 20 30 40 50 60
pF1KE3 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
.... : .:.:..::.. ::..: . :... :. . :.:::..: : : . :.
CCDS12 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK-
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
.. :::: .:: . . : :: :.::::::... ..::.: : .:.. .....
CCDS12 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW---LKELRDHADS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
. .. ::::: ::.:.:.. .. : ..:..: .:: . .: :... .:: :
CCDS12 NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI
120 130 140 150 160 170
190 200 210 220
pF1KE3 KLNK--AEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVQ
.: :. .. ..:. . : . .: . . :
CCDS12 VSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL
180 190 200 210
>>CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 (207 aa)
initn: 302 init1: 163 opt: 350 Z-score: 402.6 bits: 81.5 E(32554): 4.2e-16
Smith-Waterman score: 350; 33.1% identity (66.3% similar) in 178 aa overlap (7-184:3-175)
10 20 30 40 50 60
pF1KE3 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
.. : .:....::.. ::: : :....:. . .:::.:: .: : : :.
CCDS10 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGK-
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
.. ::::: .:: . : ::.:..::::::: .::.:...: .... :.. .
CCDS10 KIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW---IRNIEEHASS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
. ..::: :.. : .. :. .. . :.. .:::.. .: : .: .:.
CCDS10 DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIM-T
120 130 140 150 160 170
190 200 210 220
pF1KE3 KLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVQ
:::.
CCDS10 KLNRKMNDSNSAGAGGPVKITENRSKKTSFFRCSLL
180 190 200
>>CCDS41413.1 RAB25 gene_id:57111|Hs108|chr1 (213 aa)
initn: 233 init1: 133 opt: 349 Z-score: 401.3 bits: 81.4 E(32554): 5e-16
Smith-Waterman score: 349; 30.0% identity (62.7% similar) in 220 aa overlap (1-220:1-211)
10 20 30 40 50 60
pF1KE3 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL
:... ::. . .:.:..:... :::.: . :... :... . :::..: : . : :.
CCDS41 MGNGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTA
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET
: :::: .: . . : :: :.:::.:.:..:.. .: : .:.. ...:.
CCDS41 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW---LKELYDHAEA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 QPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI
.: ::::: :: . : . :. : ..::. .:: . .: : :. : ::..
CCDS41 TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA-
120 130 140 150 160 170
190 200 210 220
pF1KE3 KLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVQ
:..: : : .... .. .. .. .: .. : .
CCDS41 KVSK----QRQNSIRTNAITLGSAQAGQEPGPGEKRACCISL
180 190 200 210
>>CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18 (244 aa)
initn: 288 init1: 159 opt: 345 Z-score: 396.0 bits: 80.6 E(32554): 9.8e-16
Smith-Waterman score: 345; 32.7% identity (64.9% similar) in 208 aa overlap (10-214:40-238)
10 20 30
pF1KE3 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGK
: .:.....:. . ::::: :...:: .
CCDS42 RAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ
:.:.:.:: .. . : :. .. ::::: .:: ... . : .:.:..::::::. .
CCDS42 ACKSTVGVDFKIKTVELRGK-KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 SFENLEDWYTVVKK-VSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-NGFSSHF
.:..: :. .. : .::..: . :::::.: : : : .. .: :. .:.
CCDS42 TFDDLPKWMKMIDKYASEDAE----LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCE
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 VSAKTGDSVFLCFQKVAAEILGIKLNKAEIEQSQRVVKADIVNYNQEP-MSRTVNPPRSS
.::: . .: : :.. .: :.: .. . .. .:.. . :: . . :::
CCDS42 ASAKDNFNVDEIFLKLVDDI----LKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPH
190 200 210 220 230 240
220
pF1KE3 MCAVQ
CCDS42 VRCC
>>CCDS560.1 RAB3B gene_id:5865|Hs108|chr1 (219 aa)
initn: 244 init1: 165 opt: 344 Z-score: 395.5 bits: 80.3 E(32554): 1e-15
Smith-Waterman score: 344; 33.9% identity (63.8% similar) in 177 aa overlap (1-177:11-183)
10 20 30 40 50
pF1KE3 MSDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFF
..:. ... : ..:....:... ::::. .:..:: . .:.:.::
CCDS56 MASVTDGKTGVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 LRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTV
.. . . : ::::: .:: . : ::.: .:.::::: .::. ..:: :
CCDS56 VKTV-YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQ
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 VKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCF
.: : .. : ::::: :.:. :.. :: . .. ::. .::: . :: :
CCDS56 IKTYSWDNAQ---VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF
120 130 140 150 160 170
180 190 200 210 220
pF1KE3 QKVAAEILGIKLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVQ
.... :
CCDS56 ERLVDAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC
180 190 200 210
221 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:02:32 2016 done: Sun Nov 6 06:02:33 2016
Total Scan time: 1.870 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]