FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3501, 1222 aa 1>>>pF1KE3501 1222 - 1222 aa - 1222 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.5779+/-0.000425; mu= 4.5395+/- 0.027 mean_var=283.7074+/-59.453, 0's: 0 Z-trim(120.9): 2 B-trim: 1360 in 2/59 Lambda= 0.076145 statistics sampled from 36852 (36855) to 36852 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.432), width: 16 Scan time: 18.490 The best scores are: opt bits E(85289) NP_079330 (OMIM: 611745) deubiquitinating protein (1222) 8208 916.3 0 >>NP_079330 (OMIM: 611745) deubiquitinating protein VCIP (1222 aa) initn: 8208 init1: 8208 opt: 8208 Z-score: 4886.5 bits: 916.3 E(85289): 0 Smith-Waterman score: 8208; 99.8% identity (99.9% similar) in 1222 aa overlap (1-1222:1-1222) 10 20 30 40 50 60 pF1KE3 MSQPPPPPPPLPPPPPPPEAPQTPSSLASAAASGGLLKRRDRRILSGSCPDPKCQARLFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 MSQPPPPPPPLPPPPPPPEAPQTPSSLASAAASGGLLKRRDRRILSGSCPDPKCQARLFF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 PASGSVSIECTECGQRHEQQQLLGVEEVTDPDVVLHNLLRNALLGVTGAPKKNTELVKVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 PASGSVSIECTECGQRHEQQQLLGVEEVTDPDVVLHNLLRNALLGVTGAPKKNTELVKVM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLSNYHCKLLSPILARYGMDKQTGRAKLLRDMNQGELFDCALLGDRAFPIEPEHVNTVGY :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_079 GLSNYHCKLLSPILARYGMDKQTGRAKLLRDMNQGELFDCALLGDRAFLIEPEHVNTVGY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GKDRSGSLLYLHDTLEDIKRANKSQECLIPVHVDGDGHCLVHAVSRALVGRELFWHALRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 GKDRSGSLLYLHDTLEDIKRANKSQECLIPVHVDGDGHCLVHAVSRALVGRELFWHALRE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 NLKQHFQQHLARYQALFHDFIDAAEWEDIINECDPLFVPPEGVPLGLRNIHIFGLANVLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 NLKQHFQQHLARYQALFHDFIDAAEWEDIINECDPLFVPPEGVPLGLRNIHIFGLANVLH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 RPIILLDSLSGMRSSGDYSATFLPGLIPAEKCTGKDGHLNKPICIAWSSSGRNHYIPLVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 RPIILLDSLSGMRSSGDYSATFLPGLIPAEKCTGKDGHLNKPICIAWSSSGRNHYIPLVG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 IKGAALPKLPMNLLPKAWGVPQDLIKKYIKLEEDGGCVIGGDRSLQDKYLLRLVAAMEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 IKGAALPKLPMNLLPKAWGVPQDLIKKYIKLEEDGGCVIGGDRSLQDKYLLRLVAAMEEV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 FMDKHGIHPSLVADVHRYFYRRTGVIGVQPEEVTAAAKKAVMDNRLHKCLLCGALSELHV ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: NP_079 FMDKHGIHPSLVADVHQYFYRRTGVIGVQPEEVTAAAKKAVMDNRLHKCLLCGALSELHV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 PPEWLAPGGKLYNLAKSTHGQLRTDKNYSFPLNNLVCSYDSVKDVLVPDYGMSNLTACNW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 PPEWLAPGGKLYNLAKSTHGQLRTDKNYSFPLNNLVCSYDSVKDVLVPDYGMSNLTACNW 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 CHGTSVRKVRGDGSIVYLDGDRTNSRSTGGKCGCGFKHFWDGKEYDNLPEAFPITLEWGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 CHGTSVRKVRGDGSIVYLDGDRTNSRSTGGKCGCGFKHFWDGKEYDNLPEAFPITLEWGG 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 RVVRETVYWFQYESDSSLNSNVYDVAMKLVTKHFPGEFGSEILVQKVVHTILHQTAKKNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 RVVRETVYWFQYESDSSLNSNVYDVAMKLVTKHFPGEFGSEILVQKVVHTILHQTAKKNP 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE3 DDYTPVNIDGAHAQRVGDVQGQESESQLPTKIILTGQKTKTLHKEELNMSKTERTIQQNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 DDYTPVNIDGAHAQRVGDVQGQESESQLPTKIILTGQKTKTLHKEELNMSKTERTIQQNI 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE3 TEQASVMQKRKTEKLKQEQKGQPRTVSPSTIRDGPSSAPATPTKAPYSPTTSKEKKIRIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 TEQASVMQKRKTEKLKQEQKGQPRTVSPSTIRDGPSSAPATPTKAPYSPTTSKEKKIRIT 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE3 TNDGRQSMVTLKSSTTFFELQESIAREFNIPPYLQCIRYGFPPKELMPPQAGMEKEPVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 TNDGRQSMVTLKSSTTFFELQESIAREFNIPPYLQCIRYGFPPKELMPPQAGMEKEPVPL 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE3 QHGDRITIEILKSKAEGGQSAAAHSAHTVKQEDIAVTGKLSSKELQEQAEKEMYSLCLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 QHGDRITIEILKSKAEGGQSAAAHSAHTVKQEDIAVTGKLSSKELQEQAEKEMYSLCLLA 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE3 TLMGEDVWSYAKGLPHMFQQGGVFYSIMKKTMGMADGKHCTFPHLPGKTFVYNASEDRLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 TLMGEDVWSYAKGLPHMFQQGGVFYSIMKKTMGMADGKHCTFPHLPGKTFVYNASEDRLE 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KE3 LCVDAAGHFPIGPDVEDLVKEAVSQVRAEATTRSRESSPSHGLLKLGSGGVVKKKSEQLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 LCVDAAGHFPIGPDVEDLVKEAVSQVRAEATTRSRESSPSHGLLKLGSGGVVKKKSEQLH 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KE3 NVTAFQGKGHSLGTASGNPHLDPRARETSVVRKHNTGTDFSNSSTKTEPSVFTASSSNSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 NVTAFQGKGHSLGTASGNPHLDPRARETSVVRKHNTGTDFSNSSTKTEPSVFTASSSNSE 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KE3 LIRIAPGVVTMRDGRQLDPDLVEAQRKKLQEMVSSIQASMDRHLRDQSTEQSPSDLPQRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 LIRIAPGVVTMRDGRQLDPDLVEAQRKKLQEMVSSIQASMDRHLRDQSTEQSPSDLPQRK 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KE3 TEVVSSSAKSGSLQTGLPESFPLTGGTENLNTETTDGCVADALGAAFATRSKAQRGNSVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 TEVVSSSAKSGSLQTGLPESFPLTGGTENLNTETTDGCVADALGAAFATRSKAQRGNSVE 1150 1160 1170 1180 1190 1200 1210 1220 pF1KE3 ELEEMDSQDAEMTNTTEPMDHS :::::::::::::::::::::: NP_079 ELEEMDSQDAEMTNTTEPMDHS 1210 1220 1222 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:15:50 2016 done: Sun Nov 6 06:15:53 2016 Total Scan time: 18.490 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]