FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9611, 300 aa 1>>>pF1KE9611 300 - 300 aa - 300 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9033+/-0.000364; mu= 13.0039+/- 0.023 mean_var=84.1460+/-17.132, 0's: 0 Z-trim(113.7): 7 B-trim: 1134 in 1/53 Lambda= 0.139816 statistics sampled from 23151 (23158) to 23151 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.272), width: 16 Scan time: 5.660 The best scores are: opt bits E(85289) NP_001309030 (OMIM: 611504) centromere protein O i ( 300) 1956 404.3 1.5e-112 NP_077298 (OMIM: 611504) centromere protein O isof ( 300) 1956 404.3 1.5e-112 NP_001186732 (OMIM: 611504) centromere protein O i ( 294) 1851 383.1 3.5e-106 >>NP_001309030 (OMIM: 611504) centromere protein O isofo (300 aa) initn: 1956 init1: 1956 opt: 1956 Z-score: 2141.6 bits: 404.3 E(85289): 1.5e-112 Smith-Waterman score: 1956; 99.7% identity (100.0% similar) in 300 aa overlap (1-300:1-300) 10 20 30 40 50 60 pF1KE9 MEQANPLRPDGESKGGVLAHLERLETQVSRSRKRSEELQSVQAQEGALGTKIHKLRRLRD :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: NP_001 MEQANPLRPDGESKGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS 250 260 270 280 290 300 >>NP_077298 (OMIM: 611504) centromere protein O isoform (300 aa) initn: 1956 init1: 1956 opt: 1956 Z-score: 2141.6 bits: 404.3 E(85289): 1.5e-112 Smith-Waterman score: 1956; 99.7% identity (100.0% similar) in 300 aa overlap (1-300:1-300) 10 20 30 40 50 60 pF1KE9 MEQANPLRPDGESKGGVLAHLERLETQVSRSRKRSEELQSVQAQEGALGTKIHKLRRLRD :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: NP_077 MEQANPLRPDGESKGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS 250 260 270 280 290 300 >>NP_001186732 (OMIM: 611504) centromere protein O isofo (294 aa) initn: 1851 init1: 1851 opt: 1851 Z-score: 2027.3 bits: 383.1 E(85289): 3.5e-106 Smith-Waterman score: 1851; 99.6% identity (100.0% similar) in 285 aa overlap (16-300:10-294) 10 20 30 40 50 60 pF1KE9 MEQANPLRPDGESKGGVLAHLERLETQVSRSRKRSEELQSVQAQEGALGTKIHKLRRLRD ::::::::::::::::::.:::::::::::::::::::::::::: NP_001 MAGILASGLGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRD 10 20 30 40 50 70 80 90 100 110 120 pF1KE9 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE9 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE9 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE9 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS 240 250 260 270 280 290 300 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:26:36 2016 done: Sun Nov 6 06:26:36 2016 Total Scan time: 5.660 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]