(Circular) (Six-base) MAPSORT of: pFN21AE0479.seq Check: 9012 from: 1 to: 5650 pFN21AE0479 5650 bp With 182 enzymes: SgfI * October 20, 2009 10:48 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3460 278 Size: 53 83 186 936 1924 2468 Fragments arranged by size: 2468 1924 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2993 1937 Size: 1056 4594 Acc65I G'GTAC_C Cuts at: 2971 2971 Size: 5650 AclI AA'CG_TT Cuts at: 1563 3777 4150 1563 Size: 2214 373 3063 Fragments arranged by size: 3063 2214 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2190 3713 5097 5365 1632 Size: 558 1523 1384 268 1917 Fragments arranged by size: 1917 1523 1384 558 268 AfeI AGC'GCT Cuts at: 2312 2312 Size: 5650 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5453 AflIII A'CryG_T Cuts at: 1203 2652 4549 5526 1203 Size: 1449 1897 977 1327 Fragments arranged by size: 1897 1449 1327 977 AgeI A'CCGG_T Cuts at: 4481 4481 Size: 5650 AhdI GACnn_n'nnGTC Cuts at: 4379 4379 Size: 5650 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5650 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5650 AlwNI CAG_nnn'CTG Cuts at: 2432 3393 4965 2432 Size: 961 1572 3117 Fragments arranged by size: 3117 1572 961 ApaLI G'TGCA_C Cuts at: 2041 3707 4863 2041 Size: 1666 1156 2828 Fragments arranged by size: 2828 1666 1156 ApoI r'AATT_y Cuts at: 1493 2297 2959 3185 3337 5446 1493 Size: 804 662 226 152 2109 1697 Fragments arranged by size: 2109 1697 804 662 226 152 AseI AT'TA_AT Cuts at: 160 1032 4204 160 Size: 872 3172 1606 Fragments arranged by size: 3172 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5650 AvaI C'yCGr_G Cuts at: 1870 1943 2975 1870 Size: 73 1032 4545 Fragments arranged by size: 4545 1032 73 BamHI G'GATC_C Cuts at: 2775 2980 3347 2775 Size: 205 367 5078 Fragments arranged by size: 5078 367 205 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2817 2971 4426 618 Size: 325 217 627 1030 154 1455 1842 Fragments arranged by size: 1842 1455 1030 627 325 217 154 BanII G_rGCy'C Cuts at: 1391 2283 2969 1391 Size: 892 686 4072 Fragments arranged by size: 4072 892 686 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4679 BbvCI CC'TCA_GC Cuts at: 2100 2100 Size: 5650 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3841 3875 1903 Size: 34 1904 34 3678 Fragments arranged by size: 3678 1904 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3542 4752 3542 Size: 1210 4440 BclI T'GATC_A Cuts at: 1548 2188 2794 1548 Size: 640 606 4404 Fragments arranged by size: 4404 640 606 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4261 136 Size: 107 122 71 631 605 2589 1525 Fragments arranged by size: 2589 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5645 5645 Size: 5650 BlpI GC'TnA_GC Cuts at: 3067 3067 Size: 5650 Bme1580I G_kGCm'C Cuts at: 1790 2045 3711 4867 1790 Size: 255 1666 1156 2573 Fragments arranged by size: 2573 1666 1156 255 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5650 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3381 4339 442 Size: 416 53 83 399 24 1964 958 1753 Fragments arranged by size: 1964 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5650 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4310 1239 Size: 3071 2579 Bpu10I CC'TnA_GC Cuts at: 2100 2100 Size: 5650 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2077 3775 4640 4938 2077 Size: 1698 865 298 2789 Fragments arranged by size: 2789 1698 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2499 2756 4313 882 Size: 617 1000 257 1557 2219 Fragments arranged by size: 2219 1557 1000 617 257 BsaAI yAC'GTr Cuts at: 493 1204 3441 493 Size: 711 2237 2702 Fragments arranged by size: 2702 2237 711 BsaBI GATnn'nnATC Cuts at: 2427 5644 2427 Size: 3217 2433 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3457 3839 4474 275 Size: 53 83 186 936 1924 382 635 1451 Fragments arranged by size: 1924 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4083 4481 4755 4902 5313 4083 Size: 398 274 147 411 4420 Fragments arranged by size: 4420 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5425 Fragments arranged by size: 5425 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2399 2540 2567 2882 1186 Size: 1213 141 27 315 3954 Fragments arranged by size: 3954 1213 315 141 27 BseYI C'CCAG_C Cuts at: 4853 5349 4853 Size: 496 5154 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2528 1163 Size: 573 792 4285 Fragments arranged by size: 4285 792 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3100 3861 4889 1540 Size: 275 186 1099 761 1028 2301 Fragments arranged by size: 2301 1099 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2045 2283 3711 3796 4867 2045 Size: 238 1428 85 1071 2828 Fragments arranged by size: 2828 1428 1071 238 85 BsmI GAATG_Cn' Cuts at: 2617 3161 3254 2617 Size: 544 93 5013 Fragments arranged by size: 5013 544 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2045 2283 2969 3711 3796 4867 1391 Size: 399 255 238 686 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 686 399 255 238 85 BspEI T'CCGG_A Cuts at: 5313 5313 Size: 5650 BspHI T'CATG_A Cuts at: 2092 3539 5269 2092 Size: 1447 1730 2473 Fragments arranged by size: 2473 1730 1447 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2019 3005 844 Size: 1175 986 3489 Fragments arranged by size: 3489 1175 986 BsrBI CCG'CTC Cuts at: 1394 1823 2476 3537 1394 Size: 429 653 1061 3507 Fragments arranged by size: 3507 1061 653 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2511 4145 4319 65 Size: 1183 1263 1634 174 1396 Fragments arranged by size: 1634 1396 1263 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4294 4481 1700 Size: 110 2484 187 2869 Fragments arranged by size: 2869 2484 187 110 BsrGI T'GTAC_A Cuts at: 96 2086 2655 96 Size: 1990 569 3091 Fragments arranged by size: 3091 1990 569 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5650 BssSI C'ACGA_G Cuts at: 3710 4722 3710 Size: 1012 4638 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5650 BstBI TT'CG_AA Cuts at: 4454 4454 Size: 5650 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5650 BstXI CCAn_nnnn'nTGG Cuts at: 2821 2821 Size: 5650 BstYI r'GATC_y Cuts at: 1972 2428 2775 2980 3347 3732 3749 5201 5287 Size: 456 347 205 367 385 17 1452 86 Cuts at: 5287 5299 5645 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 456 385 367 347 346 205 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2550 2550 Size: 5650 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 4159 Fragments arranged by size: 4159 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4911 Fragments arranged by size: 4911 683 56 BtsI GCAGTG_nn' Cuts at: 3166 3960 3980 3166 Size: 794 20 4836 Fragments arranged by size: 4836 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5650 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2899 2934 529 Size: 35 2335 35 3245 Fragments arranged by size: 3245 2335 35 35 DraI TTT'AAA Cuts at: 2485 2954 2485 Size: 469 5181 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2264 4657 809 Size: 507 948 2393 1802 Fragments arranged by size: 2393 1802 948 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2146 3097 3986 Size: 54 1425 50 275 18 316 951 889 Cuts at: 3986 5615 8 Size: 1629 43 Fragments arranged by size: 1629 1425 951 889 316 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3097 1537 Size: 275 1285 4090 Fragments arranged by size: 4090 1285 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2199 2631 2754 3580 1353 Size: 846 432 123 826 3423 Fragments arranged by size: 3423 846 826 432 123 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4237 4611 4757 387 Size: 1064 138 2648 374 146 1280 Fragments arranged by size: 2648 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2281 2281 Size: 5650 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2190 3713 4310 5097 5365 1239 Size: 393 558 1523 597 787 268 1524 Fragments arranged by size: 1524 1523 787 597 558 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2360 2360 Size: 5650 EcoRI G'AATT_C Cuts at: 2959 3337 2959 Size: 378 5272 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2905 2905 Size: 5650 FspI TGC'GCA Cuts at: 4156 4156 Size: 5650 HaeII r_GCGC'y Cuts at: 1678 2314 4797 1678 Size: 636 2483 2531 Fragments arranged by size: 2531 2483 636 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2173 2205 4291 4323 4365 Size: 32 135 32 601 32 2086 32 42 Cuts at: 4365 4397 1373 Size: 32 2626 Fragments arranged by size: 2626 2086 601 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2878 2994 3240 669 Size: 988 281 940 116 246 3079 Fragments arranged by size: 3079 988 940 281 246 116 HindIII A'AGCT_T Cuts at: 748 2855 748 Size: 2107 3543 HpaI GTT'AAC Cuts at: 3240 3240 Size: 5650 KpnI G_GTAC'C Cuts at: 2975 2975 Size: 5650 MfeI C'AATT_G Cuts at: 3249 3249 Size: 5650 MluI A'CGCG_T Cuts at: 5526 5526 Size: 5650 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4764 4948 1305 Size: 3459 184 2007 Fragments arranged by size: 3459 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2148 10 Size: 54 1425 343 316 3512 Fragments arranged by size: 3512 1425 343 316 54 MslI CAynn'nnrTG Cuts at: 518 1166 2124 3608 3967 4126 518 Size: 648 958 1484 359 159 2042 Fragments arranged by size: 2042 1484 958 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2194 3066 3743 4891 5136 1606 Size: 588 872 677 1148 245 2120 Fragments arranged by size: 2120 1148 872 677 588 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4159 Fragments arranged by size: 4159 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5650 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5650 NotI GC'GGCC_GC Cuts at: 3097 3097 Size: 5650 NspI r_CATG'y Cuts at: 1132 1229 2656 3008 4553 1132 Size: 97 1427 352 1545 2229 Fragments arranged by size: 2229 1545 1427 352 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5650 PciI A'CATG_T Cuts at: 2652 4549 2652 Size: 1897 3753 PflMI CCAn_nnn'nTGG Cuts at: 1108 2772 1108 Size: 1664 3986 PmeI GTTT'AAAC Cuts at: 2954 2954 Size: 5650 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3719 3751 5232 5264 3719 Size: 32 1481 32 4105 Fragments arranged by size: 4105 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5650 PsiI TTA'TAA Cuts at: 3220 3220 Size: 5650 PstI C_TGCA'G Cuts at: 830 3002 830 Size: 2172 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5650 PvuII CAG'CTG Cuts at: 2194 2194 Size: 5650 SacI G_AGCT'C Cuts at: 2283 2283 Size: 5650 SalI G'TCGA_C Cuts at: 1936 2992 1936 Size: 1056 4594 SbfI CC_TGCA'GG Cuts at: 3002 3002 Size: 5650 ScaI AGT'ACT Cuts at: 3898 5610 3898 Size: 1712 3938 SexAI A'CCwGG_T Cuts at: 2820 2820 Size: 5650 SfcI C'TryA_G Cuts at: 826 1045 2998 4133 4814 5005 826 Size: 219 1953 1135 681 191 1471 Fragments arranged by size: 1953 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5650 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5650 SmaI CCC'GGG Cuts at: 1872 2977 1872 Size: 1105 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2056 3754 4655 4917 820 Size: 197 926 113 1698 901 262 1553 Fragments arranged by size: 1698 1553 926 901 262 197 113 SnaBI TAC'GTA Cuts at: 493 3441 493 Size: 2948 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5650 SphI G_CATG'C Cuts at: 1132 3008 1132 Size: 1876 3774 SspI AAT'ATT Cuts at: 5 52 3574 5 Size: 47 3522 2081 Fragments arranged by size: 3522 2081 47 StuI AGG'CCT Cuts at: 1517 2927 1517 Size: 1410 4240 StyI C'CwwG_G Cuts at: 513 1065 2004 2520 2862 3089 513 Size: 552 939 516 342 227 3074 Fragments arranged by size: 3074 939 552 516 342 227 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2153 3677 3694 3847 4032 4477 325 Size: 1255 573 1524 17 153 185 445 1498 Fragments arranged by size: 1524 1498 1255 573 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2086 2581 2655 Size: 274 80 33 51 1443 109 495 74 Cuts at: 2655 3896 5608 96 Size: 1241 1712 138 Fragments arranged by size: 1712 1443 1241 495 274 138 109 80 74 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5610 5642 5610 Size: 32 5618 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5650 XbaI T'CTAG_A Cuts at: 2632 2986 2632 Size: 354 5296 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2846 2846 Size: 5650 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5650 XmaI C'CCGG_G Cuts at: 1870 2975 1870 Size: 1105 4545 XmnI GAAnn'nnTTC Cuts at: 3779 3779 Size: 5650 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3458 276 Size: 53 83 186 936 1924 2468 Fragments arranged by size: 2468 1924 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SacI SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BfrBI BplI BsiWI BsmBI BstZ17I DraIII EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacII SanDI SapI SfiI SfoI SrfI SwaI