FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3760, 494 aa 1>>>pF1KE3760 494 - 494 aa - 494 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.9517+/-0.000343; mu= -5.2090+/- 0.022 mean_var=341.4743+/-69.510, 0's: 0 Z-trim(125.5): 7 B-trim: 0 in 0/58 Lambda= 0.069406 statistics sampled from 49293 (49315) to 49293 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.578), width: 16 Scan time: 13.420 The best scores are: opt bits E(85289) NP_008818 (OMIM: 612053) zinc finger protein 36, C ( 494) 3401 353.8 6.6e-97 NP_004917 (OMIM: 601064) zinc finger protein 36, C ( 338) 674 80.6 7.8e-15 NP_001231627 (OMIM: 601064) zinc finger protein 36 ( 338) 674 80.6 7.8e-15 NP_001231630 (OMIM: 601064) zinc finger protein 36 ( 407) 674 80.7 9e-15 NP_003398 (OMIM: 190700) tristetraprolin [Homo sap ( 332) 455 58.7 3.1e-08 >>NP_008818 (OMIM: 612053) zinc finger protein 36, C3H1 (494 aa) initn: 3401 init1: 3401 opt: 3401 Z-score: 1860.8 bits: 353.8 E(85289): 6.6e-97 Smith-Waterman score: 3401; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494) 10 20 30 40 50 60 pF1KE3 MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 LHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 ALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 ALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCAN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 NAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 NAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 AAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 AAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG 430 440 450 460 470 480 490 pF1KE3 RRLPIFSRLSISDD :::::::::::::: NP_008 RRLPIFSRLSISDD 490 >>NP_004917 (OMIM: 601064) zinc finger protein 36, C3H1 (338 aa) initn: 941 init1: 552 opt: 674 Z-score: 387.3 bits: 80.6 E(85289): 7.8e-15 Smith-Waterman score: 902; 43.1% identity (56.9% similar) in 501 aa overlap (1-494:1-338) 10 20 30 40 50 pF1KE3 MSTTLLSA-FYDV-DFLCKTEKSL---ANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRR :.:::.:: ..:. . ::: .: : : . .::.::::::... :: :: NP_004 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGG--------GFPRR 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 HSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNK ::.. :: :: . .. :. : :. : :: .. NP_004 HSVT--------LPSS-----KF----HQNQLLSSLKGEPA-------P------ALSSR 60 70 80 120 130 140 150 160 170 pF1KE3 ENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQ ...::::::::.:.: :: :.: ::.:.::.::::::::::::.:.::::.::: NP_004 DSRFRDRSFSEGGER---LLPTQKQP---GGGQVNSSRYKTELCRPFEENGACKYGDKCQ 90 100 110 120 130 180 190 200 210 220 230 pF1KE3 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRA ::::.::::::::::::::::::::::::::::::::::::::.::: .:: :: : NP_004 FAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL--AGAR-DLSA 140 150 160 170 180 190 240 250 260 270 280 290 pF1KE3 FGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSS ::.:.::.::.::::. . . ::::::: :::: NP_004 --------------DRPRLQHSFSFAGFPSA----AATAAATGLLDSPTSITPPP----- 200 210 220 230 300 310 320 330 340 350 pF1KE3 ASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSS .: .:.::: :.: . NP_004 -------------------------------------IL----SADDLL--GSP----TL 240 360 370 380 390 400 410 pF1KE3 ASCANNAFAFGP-ELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPS . .:: :::. ::.:: :: :: NP_004 PDGTNNPFAFSSQELASL----------FA----------------------------PS 250 260 420 430 440 450 460 470 pF1KE3 ATLPAGAAAPPSPPFSFQLPRRLSDSP-VFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSE ::.:.. : .: : : .:.:: .::.:::: :::::...:::.: :.: :::. NP_004 MGLPGGGS-----PTTF-LFRPMSESPHMFDSPPSPQDSLSDQEGYLSSS--SSSHSGSD 270 280 290 300 310 480 490 pF1KE3 SPSLDPGRRLPIFSRLSISDD ::.:: .:::::::::::::: NP_004 SPTLDNSRRLPIFSRLSISDD 320 330 >>NP_001231627 (OMIM: 601064) zinc finger protein 36, C3 (338 aa) initn: 941 init1: 552 opt: 674 Z-score: 387.3 bits: 80.6 E(85289): 7.8e-15 Smith-Waterman score: 902; 43.1% identity (56.9% similar) in 501 aa overlap (1-494:1-338) 10 20 30 40 50 pF1KE3 MSTTLLSA-FYDV-DFLCKTEKSL---ANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRR :.:::.:: ..:. . ::: .: : : . .::.::::::... :: :: NP_001 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGG--------GFPRR 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 HSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNK ::.. :: :: . .. :. : :. : :: .. NP_001 HSVT--------LPSS-----KF----HQNQLLSSLKGEPA-------P------ALSSR 60 70 80 120 130 140 150 160 170 pF1KE3 ENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQ ...::::::::.:.: :: :.: ::.:.::.::::::::::::.:.::::.::: NP_001 DSRFRDRSFSEGGER---LLPTQKQP---GGGQVNSSRYKTELCRPFEENGACKYGDKCQ 90 100 110 120 130 180 190 200 210 220 230 pF1KE3 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRA ::::.::::::::::::::::::::::::::::::::::::::.::: .:: :: : NP_001 FAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL--AGAR-DLSA 140 150 160 170 180 190 240 250 260 270 280 290 pF1KE3 FGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSS ::.:.::.::.::::. . . ::::::: :::: NP_001 --------------DRPRLQHSFSFAGFPSA----AATAAATGLLDSPTSITPPP----- 200 210 220 230 300 310 320 330 340 350 pF1KE3 ASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSS .: .:.::: :.: . NP_001 -------------------------------------IL----SADDLL--GSP----TL 240 360 370 380 390 400 410 pF1KE3 ASCANNAFAFGP-ELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPS . .:: :::. ::.:: :: :: NP_001 PDGTNNPFAFSSQELASL----------FA----------------------------PS 250 260 420 430 440 450 460 470 pF1KE3 ATLPAGAAAPPSPPFSFQLPRRLSDSP-VFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSE ::.:.. : .: : : .:.:: .::.:::: :::::...:::.: :.: :::. NP_001 MGLPGGGS-----PTTF-LFRPMSESPHMFDSPPSPQDSLSDQEGYLSSS--SSSHSGSD 270 280 290 300 310 480 490 pF1KE3 SPSLDPGRRLPIFSRLSISDD ::.:: .:::::::::::::: NP_001 SPTLDNSRRLPIFSRLSISDD 320 330 >>NP_001231630 (OMIM: 601064) zinc finger protein 36, C3 (407 aa) initn: 941 init1: 552 opt: 674 Z-score: 386.2 bits: 80.7 E(85289): 9e-15 Smith-Waterman score: 902; 43.1% identity (56.9% similar) in 501 aa overlap (1-494:70-407) 10 20 pF1KE3 MSTTLLSA-FYDV-DFLCKTEKSL---ANL :.:::.:: ..:. . ::: .: : : NP_001 GLQTGEAAPSPHRDLRDTPDPRPWLARTHRMTTTLVSATIFDLSEVLCKGNKMLNYSAPS 40 50 60 70 80 90 30 40 50 60 70 80 pF1KE3 NLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASNLHALAHPAPSPGSCSPKFPGAANGS . .::.::::::... :: ::::.. :: :: . . NP_001 AGGCLLDRKAVGTPAGG--------GFPRRHSVT--------LPSS-----KF----HQN 100 110 120 130 90 100 110 120 130 140 pF1KE3 SCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFRDRSFSENGDRSQHLLHLQQQQKGGG . :. : :. : :: .....::::::::.:.: :: :.: : NP_001 QLLSSLKGEPA-------P------ALSSRDSRFRDRSFSEGGER---LLPTQKQP---G 140 150 160 170 150 160 170 180 190 200 pF1KE3 GSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGF :.:.::.::::::::::::.:.::::.:::::::.::::::::::::::::::::::::: NP_001 GGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGF 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE3 CPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPS :::::::::::::.::: .:: :: : ::.:.::.::.:::: NP_001 CPYGPRCHFIHNAEERRAL--AGAR-DLSA--------------DRPRLQHSFSFAGFPS 240 250 260 270 270 280 290 300 310 320 pF1KE3 GHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASA . . . ::::::: :::: NP_001 A----AATAAATGLLDSPTSITPPP----------------------------------- 280 290 330 340 350 360 370 380 pF1KE3 AAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGP-ELSSLITPLAIQTHNFA .: .:.::: :.: . . .:: :::. ::.:: :: NP_001 -------IL----SADDLL--GSP----TLPDGTNNPFAFSSQELASL----------FA 300 310 320 330 390 400 410 420 430 440 pF1KE3 AVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSP-VF :: ::.:.. : .: : : .:.:: .: NP_001 ----------------------------PSMGLPGGGS-----PTTF-LFRPMSESPHMF 340 350 450 460 470 480 490 pF1KE3 DAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPGRRLPIFSRLSISDD :.:::: :::::...:::.: :.: :::.::.:: .:::::::::::::: NP_001 DSPPSPQDSLSDQEGYLSSS--SSSHSGSDSPTLDNSRRLPIFSRLSISDD 360 370 380 390 400 >>NP_003398 (OMIM: 190700) tristetraprolin [Homo sapiens (332 aa) initn: 440 init1: 384 opt: 455 Z-score: 268.9 bits: 58.7 E(85289): 3.1e-08 Smith-Waterman score: 499; 45.6% identity (60.1% similar) in 193 aa overlap (152-339:108-273) 130 140 150 160 170 180 pF1KE3 RSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFH .:::::::: : ::: :.:: :::::::. NP_003 PPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLG 80 90 100 110 120 130 190 200 210 220 230 240 pF1KE3 ELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRDA :::. .::::::::::. :. : :::: ::::::: .: :: NP_003 ELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAP---------------- 140 150 160 170 180 250 260 270 280 290 pF1KE3 LHLGFPREPRPKLHHSLSFSGFPSGHHQ--PPGGLESPLLLDS---PTSRTPPPPSCSSA : : : :..:.::::.:::.. :: :: .: : .: :.: .::::. NP_003 ---GHP----PVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSS-SPPPPGDLPL 190 200 210 220 230 300 310 320 330 340 350 pF1KE3 SSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSA : . ::. .. : :. :.:: : :. .. :: NP_003 SPSAFSAAP-GTPLARRDPT--PVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEY 240 250 260 270 280 290 360 370 380 390 400 410 pF1KE3 SCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSAT NP_003 ASSGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE 300 310 320 330 494 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 07:09:15 2016 done: Sun Nov 6 07:09:17 2016 Total Scan time: 13.420 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]