FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3760, 494 aa 1>>>pF1KE3760 494 - 494 aa - 494 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.3433+/-0.000915; mu= -1.6330+/- 0.056 mean_var=324.2865+/-64.489, 0's: 0 Z-trim(117.5): 10 B-trim: 0 in 0/54 Lambda= 0.071221 statistics sampled from 18304 (18314) to 18304 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.563), width: 16 Scan time: 3.820 The best scores are: opt bits E(32554) CCDS1811.1 ZFP36L2 gene_id:678|Hs108|chr2 ( 494) 3401 362.6 5.6e-100 CCDS9791.1 ZFP36L1 gene_id:677|Hs108|chr14 ( 338) 674 82.2 9.5e-16 >>CCDS1811.1 ZFP36L2 gene_id:678|Hs108|chr2 (494 aa) initn: 3401 init1: 3401 opt: 3401 Z-score: 1908.4 bits: 362.6 E(32554): 5.6e-100 Smith-Waterman score: 3401; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494) 10 20 30 40 50 60 pF1KE3 MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 LHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 ALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 ALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCAN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 NAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 NAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 AAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 AAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG 430 440 450 460 470 480 490 pF1KE3 RRLPIFSRLSISDD :::::::::::::: CCDS18 RRLPIFSRLSISDD 490 >>CCDS9791.1 ZFP36L1 gene_id:677|Hs108|chr14 (338 aa) initn: 941 init1: 552 opt: 674 Z-score: 396.2 bits: 82.2 E(32554): 9.5e-16 Smith-Waterman score: 902; 43.1% identity (56.9% similar) in 501 aa overlap (1-494:1-338) 10 20 30 40 50 pF1KE3 MSTTLLSA-FYDV-DFLCKTEKSL---ANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRR :.:::.:: ..:. . ::: .: : : . .::.::::::... :: :: CCDS97 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGG--------GFPRR 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 HSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNK ::.. :: :: . .. :. : :. : :: .. CCDS97 HSVT--------LPSS-----KF----HQNQLLSSLKGEPA-------P------ALSSR 60 70 80 120 130 140 150 160 170 pF1KE3 ENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQ ...::::::::.:.: :: :.: ::.:.::.::::::::::::.:.::::.::: CCDS97 DSRFRDRSFSEGGER---LLPTQKQP---GGGQVNSSRYKTELCRPFEENGACKYGDKCQ 90 100 110 120 130 180 190 200 210 220 230 pF1KE3 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRA ::::.::::::::::::::::::::::::::::::::::::::.::: .:: :: : CCDS97 FAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL--AGAR-DLSA 140 150 160 170 180 190 240 250 260 270 280 290 pF1KE3 FGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSS ::.:.::.::.::::. . . ::::::: :::: CCDS97 --------------DRPRLQHSFSFAGFPSA----AATAAATGLLDSPTSITPPP----- 200 210 220 230 300 310 320 330 340 350 pF1KE3 ASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSS .: .:.::: :.: . CCDS97 -------------------------------------IL----SADDLL--GSP----TL 240 360 370 380 390 400 410 pF1KE3 ASCANNAFAFGP-ELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPS . .:: :::. ::.:: :: :: CCDS97 PDGTNNPFAFSSQELASL----------FA----------------------------PS 250 260 420 430 440 450 460 470 pF1KE3 ATLPAGAAAPPSPPFSFQLPRRLSDSP-VFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSE ::.:.. : .: : : .:.:: .::.:::: :::::...:::.: :.: :::. CCDS97 MGLPGGGS-----PTTF-LFRPMSESPHMFDSPPSPQDSLSDQEGYLSSS--SSSHSGSD 270 280 290 300 310 480 490 pF1KE3 SPSLDPGRRLPIFSRLSISDD ::.:: .:::::::::::::: CCDS97 SPTLDNSRRLPIFSRLSISDD 320 330 494 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 07:09:14 2016 done: Sun Nov 6 07:09:15 2016 Total Scan time: 3.820 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]