FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3751, 1469 aa 1>>>pF1KE3751 1469 - 1469 aa - 1469 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.5248+/-0.00106; mu= -8.3573+/- 0.063 mean_var=415.6768+/-84.973, 0's: 0 Z-trim(115.2): 75 B-trim: 144 in 1/53 Lambda= 0.062907 statistics sampled from 15665 (15737) to 15665 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.483), width: 16 Scan time: 6.030 The best scores are: opt bits E(32554) CCDS6998.1 SNAPC4 gene_id:6621|Hs108|chr9 (1469) 9852 909.5 0 >>CCDS6998.1 SNAPC4 gene_id:6621|Hs108|chr9 (1469 aa) initn: 9852 init1: 9852 opt: 9852 Z-score: 4847.2 bits: 909.5 E(32554): 0 Smith-Waterman score: 9852; 100.0% identity (100.0% similar) in 1469 aa overlap (1-1469:1-1469) 10 20 30 40 50 60 pF1KE3 MDVDAEREKITQEIKELERILDPGSSGSHVEISESSLESDSEADSLPSEDLDPADPPISE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MDVDAEREKITQEIKELERILDPGSSGSHVEISESSLESDSEADSLPSEDLDPADPPISE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EERWGEASNDEDDPKDKTLPEDPETCLQLNMVYQEVIQEKLAEANLLLAQNREQQEELMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 EERWGEASNDEDDPKDKTLPEDPETCLQLNMVYQEVIQEKLAEANLLLAQNREQQEELMR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DLAGSKGTKVKDGKSLPPSTYMGHFMKPYFKDKVTGVGPPANEDTREKAAQGIKAFEELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 DLAGSKGTKVKDGKSLPPSTYMGHFMKPYFKDKVTGVGPPANEDTREKAAQGIKAFEELL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VTKWKNWEKALLRKSVVSDRLQRLLQPKLLKLEYLHQKQSKVSSELERQALEKQGREAEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 VTKWKNWEKALLRKSVVSDRLQRLLQPKLLKLEYLHQKQSKVSSELERQALEKQGREAEK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 EIQDINQLPEEALLGNRLDSHDWEKISNINFEGSRSAEEIRKFWQNSEHPSINKQEWSRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 EIQDINQLPEEALLGNRLDSHDWEKISNINFEGSRSAEEIRKFWQNSEHPSINKQEWSRE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 EEERLQAIAAAHGHLEWQKIAEELGTSRSAFQCLQKFQQHNKALKRKEWTEEEDRMLTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 EEERLQAIAAAHGHLEWQKIAEELGTSRSAFQCLQKFQQHNKALKRKEWTEEEDRMLTQL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 VQEMRVGSHIPYRRIVYYMEGRDSMQLIYRWTKSLDPGLKKGYWAPEEDAKLLQAVAKYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 VQEMRVGSHIPYRRIVYYMEGRDSMQLIYRWTKSLDPGLKKGYWAPEEDAKLLQAVAKYG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 EQDWFKIREEVPGRSDAQCRDRYLRRLHFSLKKGRWNLKEEEQLIELIEKYGVGHWAKIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 EQDWFKIREEVPGRSDAQCRDRYLRRLHFSLKKGRWNLKEEEQLIELIEKYGVGHWAKIA 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 SELPHRSGSQCLSKWKIMMGKKQGLRRRRRRARHSVRWSSTSSSGSSSGSSGGSSSSSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SELPHRSGSQCLSKWKIMMGKKQGLRRRRRRARHSVRWSSTSSSGSSSGSSGGSSSSSSS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 SSEEDEPEQAQAGEGDRALLSPQYMVPDMDLWVPARQSTSQPWRGGAGAWLGGPAASLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SSEEDEPEQAQAGEGDRALLSPQYMVPDMDLWVPARQSTSQPWRGGAGAWLGGPAASLSP 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 PKGSSASQGGSKEASTTAAAPGEETSPVQVPARAHGPVPRSAQASHSADTRPAGAEKQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 PKGSSASQGGSKEASTTAAAPGEETSPVQVPARAHGPVPRSAQASHSADTRPAGAEKQAL 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE3 EGGRRLLTVPVETVLRVLRANTAARSCTQKEQLRQPPLPTSSPGVSSGDSVARSHVQWLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 EGGRRLLTVPVETVLRVLRANTAARSCTQKEQLRQPPLPTSSPGVSSGDSVARSHVQWLR 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE3 HRATQSGQRRWRHALHRRLLNRRLLLAVTPWVGDVVVPCTQASQRPAVVQTQADGLREQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 HRATQSGQRRWRHALHRRLLNRRLLLAVTPWVGDVVVPCTQASQRPAVVQTQADGLREQL 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE3 QQARLASTPVFTLFTQLFHIDTAGCLEVVRERKALPPRLPQAGARDPPVHLLQASSSAQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 QQARLASTPVFTLFTQLFHIDTAGCLEVVRERKALPPRLPQAGARDPPVHLLQASSSAQS 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE3 TPGHLFPNVPAQEASKSASHKGSRRLASSRVERTLPQASLLASTGPRPKPKTVSELLQEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 TPGHLFPNVPAQEASKSASHKGSRRLASSRVERTLPQASLLASTGPRPKPKTVSELLQEK 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE3 RLQEARAREATRGPVVLPSQLLVSSSVILQPPLPHTPHGRPAPGPTVLNVPLSGPGAPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 RLQEARAREATRGPVVLPSQLLVSSSVILQPPLPHTPHGRPAPGPTVLNVPLSGPGAPAA 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KE3 AKPGTSGSWQEAGTSAKDKRLSTMQALPLAPVFSEAEGTAPAASQAPALGPGQISVSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 AKPGTSGSWQEAGTSAKDKRLSTMQALPLAPVFSEAEGTAPAASQAPALGPGQISVSCPE 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KE3 SGLGQSQAPAASRKQGLPEAPPFLPAAPSPTPLPVQPLSLTHIGGPHVATSVPLPVTWVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SGLGQSQAPAASRKQGLPEAPPFLPAAPSPTPLPVQPLSLTHIGGPHVATSVPLPVTWVL 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KE3 TAQGLLPVPVPAVVSLPRPAGTPGPAGLLATLLPPLTETRAAQGPRAPALSSSWQPPANM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 TAQGLLPVPVPAVVSLPRPAGTPGPAGLLATLLPPLTETRAAQGPRAPALSSSWQPPANM 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KE3 NREPEPSCRTDTPAPPTHALSQSPAEADGSVAFVPGEAQVAREIPEPRTSSHADPPEAEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 NREPEPSCRTDTPAPPTHALSQSPAEADGSVAFVPGEAQVAREIPEPRTSSHADPPEAEP 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 pF1KE3 PWSGRLPAFGGVIPATEPRGTPGSPSGTQEPRGPLGLEKLPLRQPGPEKGALDLEKPPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 PWSGRLPAFGGVIPATEPRGTPGSPSGTQEPRGPLGLEKLPLRQPGPEKGALDLEKPPLP 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 pF1KE3 QPGPEKGALDLGLLSQEGEAATQQWLGGQRGVRVPLLGSRLPYQPPALCSLRALSGLLLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 QPGPEKGALDLGLLSQEGEAATQQWLGGQRGVRVPLLGSRLPYQPPALCSLRALSGLLLH 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 pF1KE3 KKALEHKATSLVVGGEAERPAGALQASLGLVRGQLQDNPAYLLLRARFLAAFTLPALLAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 KKALEHKATSLVVGGEAERPAGALQASLGLVRGQLQDNPAYLLLRARFLAAFTLPALLAT 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 pF1KE3 LAPQGVRTTLSVPSRVGSESEDEDLLSELELADRDGQPGCTTATCPIQGAPDSGKCSASS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 LAPQGVRTTLSVPSRVGSESEDEDLLSELELADRDGQPGCTTATCPIQGAPDSGKCSASS 1390 1400 1410 1420 1430 1440 1450 1460 pF1KE3 CLDTSNDPDDLDVLRTRHARHTRKRRRLV ::::::::::::::::::::::::::::: CCDS69 CLDTSNDPDDLDVLRTRHARHTRKRRRLV 1450 1460 1469 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 07:40:57 2016 done: Sun Nov 6 07:40:58 2016 Total Scan time: 6.030 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]