Result of FASTA (omim) for
pFN21AE3953
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3953, 270 aa
1>>>pF1KE3953 270 - 270 aa - 270 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0591+/-0.000456; mu= 0.1874+/- 0.028
mean_var=290.1310+/-59.167, 0's: 0 Z-trim(119.8): 167 B-trim: 1614 in 1/53
Lambda= 0.075297
statistics sampled from 34182 (34358) to 34182 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.403), width: 16
Scan time: 7.880
The best scores are: opt bits E(85289)
NP_569074 (OMIM: 605684) tripartite motif-containi ( 270) 1816 210.0 3.7e-54
NP_001003827 (OMIM: 605684) tripartite motif-conta ( 488) 1730 201.0 3.6e-51
NP_067629 (OMIM: 605684) tripartite motif-containi ( 488) 1730 201.0 3.6e-51
NP_477514 (OMIM: 607564) tripartite motif-containi ( 488) 1087 131.1 3.8e-30
NP_001003818 (OMIM: 607564) tripartite motif-conta ( 516) 1087 131.1 3.9e-30
XP_006718421 (OMIM: 608487) PREDICTED: tripartite ( 265) 1080 130.1 4.2e-30
XP_016873952 (OMIM: 608487) PREDICTED: tripartite ( 265) 1080 130.1 4.2e-30
XP_016873951 (OMIM: 608487) PREDICTED: tripartite ( 300) 1080 130.1 4.6e-30
XP_016873950 (OMIM: 608487) PREDICTED: tripartite ( 310) 1080 130.2 4.7e-30
XP_011518728 (OMIM: 608487) PREDICTED: tripartite ( 310) 1080 130.2 4.7e-30
NP_149084 (OMIM: 608487) tripartite motif-containi ( 326) 1080 130.2 4.9e-30
XP_005253241 (OMIM: 608487) PREDICTED: tripartite ( 326) 1080 130.2 4.9e-30
NP_149083 (OMIM: 608487) tripartite motif-containi ( 347) 1080 130.2 5.1e-30
XP_005253240 (OMIM: 608487) PREDICTED: tripartite ( 493) 1080 130.4 6.5e-30
NP_149023 (OMIM: 608487) tripartite motif-containi ( 493) 1080 130.4 6.5e-30
XP_011518729 (OMIM: 608487) PREDICTED: tripartite ( 271) 1068 128.8 1.1e-29
NP_006065 (OMIM: 606559) E3 ubiquitin-protein liga ( 498) 1068 129.1 1.6e-29
XP_016873949 (OMIM: 608487) PREDICTED: tripartite ( 314) 1060 128.0 2.1e-29
NP_001186502 (OMIM: 606559) E3 ubiquitin-protein l ( 494) 1042 126.2 1.1e-28
NP_003132 (OMIM: 109092) E3 ubiquitin-protein liga ( 475) 736 93.0 1.1e-18
NP_060543 (OMIM: 613184) E3 ubiquitin-protein liga ( 485) 575 75.5 2.1e-13
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 545 72.2 2e-12
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 535 71.1 4.1e-12
NP_742013 (OMIM: 605700) E3 ubiquitin-protein liga ( 488) 532 70.8 5.3e-12
NP_006501 (OMIM: 602165) zinc finger protein RFP [ ( 513) 532 70.9 5.5e-12
NP_067076 (OMIM: 605700) E3 ubiquitin-protein liga ( 518) 522 69.8 1.2e-11
XP_016856908 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 262) 508 67.9 2.1e-11
XP_016856907 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 262) 508 67.9 2.1e-11
NP_001128327 (OMIM: 606123) E3 ubiquitin-protein l ( 343) 508 68.1 2.6e-11
XP_011542511 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 508 68.2 3.2e-11
XP_011542512 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 508 68.2 3.2e-11
XP_006711842 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 508 68.2 3.2e-11
NP_001020111 (OMIM: 606123) E3 ubiquitin-protein l ( 477) 508 68.2 3.2e-11
NP_057186 (OMIM: 606123) E3 ubiquitin-protein liga ( 477) 508 68.2 3.2e-11
NP_439893 (OMIM: 605701) tripartite motif-containi ( 395) 481 65.2 2.2e-10
NP_006769 (OMIM: 605701) tripartite motif-containi ( 481) 481 65.3 2.5e-10
XP_011512568 (OMIM: 609316) PREDICTED: E3 ubiquiti ( 261) 472 64.0 3.2e-10
XP_011512567 (OMIM: 609316) PREDICTED: E3 ubiquiti ( 421) 472 64.2 4.4e-10
XP_011512566 (OMIM: 609316) PREDICTED: E3 ubiquiti ( 424) 472 64.2 4.5e-10
NP_008959 (OMIM: 609316) E3 ubiquitin-protein liga ( 425) 472 64.3 4.5e-10
XP_005249433 (OMIM: 600830) PREDICTED: tripartite ( 539) 466 63.7 8.2e-10
XP_005249431 (OMIM: 600830) PREDICTED: tripartite ( 539) 466 63.7 8.2e-10
XP_005249432 (OMIM: 600830) PREDICTED: tripartite ( 539) 466 63.7 8.2e-10
XP_005249434 (OMIM: 600830) PREDICTED: tripartite ( 539) 466 63.7 8.2e-10
NP_001229712 (OMIM: 600830) tripartite motif-conta ( 539) 466 63.7 8.2e-10
NP_003440 (OMIM: 600830) tripartite motif-containi ( 539) 466 63.7 8.2e-10
XP_006715243 (OMIM: 600830) PREDICTED: tripartite ( 539) 466 63.7 8.2e-10
XP_005249435 (OMIM: 600830) PREDICTED: tripartite ( 539) 466 63.7 8.2e-10
XP_011542513 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 450) 431 59.8 1e-08
XP_011512527 (OMIM: 605701) PREDICTED: tripartite ( 413) 429 59.6 1.1e-08
>>NP_569074 (OMIM: 605684) tripartite motif-containing p (270 aa)
initn: 1816 init1: 1816 opt: 1816 Z-score: 1093.4 bits: 210.0 E(85289): 3.7e-54
Smith-Waterman score: 1816; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)
10 20 30 40 50 60
pF1KE3 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_569 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_569 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_569 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_569 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
190 200 210 220 230 240
250 260 270
pF1KE3 SQWSTMELLQDMSGIMKWCVWVARSGACEL
::::::::::::::::::::::::::::::
NP_569 SQWSTMELLQDMSGIMKWCVWVARSGACEL
250 260 270
>>NP_001003827 (OMIM: 605684) tripartite motif-containin (488 aa)
initn: 1724 init1: 1724 opt: 1730 Z-score: 1039.7 bits: 201.0 E(85289): 3.6e-51
Smith-Waterman score: 1730; 98.9% identity (99.2% similar) in 262 aa overlap (1-261:1-262)
10 20 30 40 50 60
pF1KE3 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
190 200 210 220 230 240
250 260 270
pF1KE3 SQWSTMELLQDMSGIMKWC-VWVARSGACEL
:::::::::::::::::: .:
NP_001 SQWSTMELLQDMSGIMKWSEIWRLKKPKMVSKKLKTVFHAPDLSRMLQMFRELTAVRCYW
250 260 270 280 290 300
>>NP_067629 (OMIM: 605684) tripartite motif-containing p (488 aa)
initn: 1724 init1: 1724 opt: 1730 Z-score: 1039.7 bits: 201.0 E(85289): 3.6e-51
Smith-Waterman score: 1730; 98.9% identity (99.2% similar) in 262 aa overlap (1-261:1-262)
10 20 30 40 50 60
pF1KE3 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
190 200 210 220 230 240
250 260 270
pF1KE3 SQWSTMELLQDMSGIMKWC-VWVARSGACEL
:::::::::::::::::: .:
NP_067 SQWSTMELLQDMSGIMKWSEIWRLKKPKMVSKKLKTVFHAPDLSRMLQMFRELTAVRCYW
250 260 270 280 290 300
>>NP_477514 (OMIM: 607564) tripartite motif-containing p (488 aa)
initn: 1099 init1: 1056 opt: 1087 Z-score: 662.2 bits: 131.1 E(85289): 3.8e-30
Smith-Waterman score: 1087; 63.0% identity (81.9% similar) in 265 aa overlap (1-264:1-265)
10 20 30 40 50 60
pF1KE3 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
:.: .:....:::::::::::::::::.:::::.:.:::: ...:.: .. :. :::::
NP_477 MTSPVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCPVCQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
::. .:. :.::::::.::.:: :.: . : :: ::::: :::.:: ::::::::
NP_477 TSYQPGNLRPNRHLANIVRRLREVVLGPGKQLKAVLCADHGEKLQLFCQEDGKVICWLCE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
:::::::::: :.::: .: :::.: ::.::.::.::::: : :::.::::: :.. ::
NP_477 RSQEHRGHHTFLVEEVAQEYQEKFQESLKKLKNEEQEAEKLTAFIREKKTSWKNQMEPER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
::::::.:::.::. :::::..::.:::: : . :::..::.: : .::::::.: :
NP_477 CRIQTEFNQLRNILDRVEQRELKKLEQEEKKGLRIIEEAENDLVHQTQSLRELISDLERR
190 200 210 220 230 240
250 260 270
pF1KE3 SQWSTMELLQDMSGIMKWC-VWVARSGACEL
: ::::::::.: . . :. :
NP_477 CQGSTMELLQDVSDVTERSEFWTLRKPEALPTKLRSMFRAPDLKRMLRVCRELTDVQSYW
250 260 270 280 290 300
>>NP_001003818 (OMIM: 607564) tripartite motif-containin (516 aa)
initn: 1079 init1: 1056 opt: 1087 Z-score: 661.9 bits: 131.1 E(85289): 3.9e-30
Smith-Waterman score: 1087; 63.0% identity (81.9% similar) in 265 aa overlap (1-264:29-293)
10 20 30
pF1KE3 MASKILLNVQEEVTCPICLELLTEPLSLDCGH
:.: .:....:::::::::::::::::.::::
NP_001 MCGSERILQAGNILEIRVGQAGARRVATMTSPVLVDIREEVTCPICLELLTEPLSIDCGH
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 SLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIVERLKEVKLSPDNGK
:.:.:::: ...:.: .. :. ::::: ::. .:. :.::::::.::.:: :.: .
NP_001 SFCQACITPNGRESVIGQEGERSCPVCQTSYQPGNLRPNRHLANIVRRLREVVLGPGKQL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 KRDLCDHHGEKLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKECQEKLQAVLKRLK
: :: ::::: :::.:: :::::::::::::::::: :.::: .: :::.: ::.::
NP_001 KAVLCADHGEKLQLFCQEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLK
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 KEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQRELQRLEEEEKKT
.::.::::: : :::.::::: :.. :: ::::::.:::.::. :::::..::.::::
NP_001 NEEQEAEKLTAFIREKKTSWKNQMEPERCRIQTEFNQLRNILDRVEQRELKKLEQEEKKG
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE3 LDKFAEAEDELVQQKQLVRELISDVECRSQWSTMELLQDMSGIMKWC-VWVARSGACEL
: . :::..::.: : .::::::.: : : ::::::::.: . . :. :
NP_001 LRIIEEAENDLVHQTQSLRELISDLERRCQGSTMELLQDVSDVTERSEFWTLRKPEALPT
250 260 270 280 290 300
NP_001 KLRSMFRAPDLKRMLRVCRELTDVQSYWVDVTLNPHTANLNLVLAKNRRQVRFVGAKVSG
310 320 330 340 350 360
>>XP_006718421 (OMIM: 608487) PREDICTED: tripartite moti (265 aa)
initn: 914 init1: 650 opt: 1080 Z-score: 661.4 bits: 130.1 E(85289): 4.2e-30
Smith-Waterman score: 1080; 62.6% identity (86.4% similar) in 257 aa overlap (1-257:1-255)
10 20 30 40 50 60
pF1KE3 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
::: ::.::.:::::::::::::.:::::::::.:.::.:...:... . : .::::::
XP_006 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG-ESSCPVCR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
:::. :... :.:.:::::.:.::::::. :.: : : .:::::::::.:: ::::::::
XP_006 ISYQPENIRPNRHVANIVEKLREVKLSPE-GQKVDHCARHGEKLLLFCQEDGKVICWLCE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
:::::::::: ::::: .: : ::::.:. :.....:::.:::::::::.::: :.: ..
XP_006 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
. ..:.:::.::. ::. ::: ::.::. : .....: :.::: : .::::::.: :
XP_006 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR
180 190 200 210 220 230
250 260 270
pF1KE3 SQWSTMELLQDMSGIMKWCVWVARSGACEL
: :.::::: ..:..:
XP_006 LQGSVMELLQGVDGVIKRADRCPTLLG
240 250 260
>>XP_016873952 (OMIM: 608487) PREDICTED: tripartite moti (265 aa)
initn: 914 init1: 650 opt: 1080 Z-score: 661.4 bits: 130.1 E(85289): 4.2e-30
Smith-Waterman score: 1080; 62.6% identity (86.4% similar) in 257 aa overlap (1-257:1-255)
10 20 30 40 50 60
pF1KE3 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
::: ::.::.:::::::::::::.:::::::::.:.::.:...:... . : .::::::
XP_016 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG-ESSCPVCR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
:::. :... :.:.:::::.:.::::::. :.: : : .:::::::::.:: ::::::::
XP_016 ISYQPENIRPNRHVANIVEKLREVKLSPE-GQKVDHCARHGEKLLLFCQEDGKVICWLCE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
:::::::::: ::::: .: : ::::.:. :.....:::.:::::::::.::: :.: ..
XP_016 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
. ..:.:::.::. ::. ::: ::.::. : .....: :.::: : .::::::.: :
XP_016 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR
180 190 200 210 220 230
250 260 270
pF1KE3 SQWSTMELLQDMSGIMKWCVWVARSGACEL
: :.::::: ..:..:
XP_016 LQGSVMELLQGVDGVIKRADRCPTLLG
240 250 260
>>XP_016873951 (OMIM: 608487) PREDICTED: tripartite moti (300 aa)
initn: 914 init1: 650 opt: 1080 Z-score: 660.7 bits: 130.1 E(85289): 4.6e-30
Smith-Waterman score: 1080; 62.6% identity (86.4% similar) in 257 aa overlap (1-257:1-255)
10 20 30 40 50 60
pF1KE3 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
::: ::.::.:::::::::::::.:::::::::.:.::.:...:... . : .::::::
XP_016 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG-ESSCPVCR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
:::. :... :.:.:::::.:.::::::. :.: : : .:::::::::.:: ::::::::
XP_016 ISYQPENIRPNRHVANIVEKLREVKLSPE-GQKVDHCARHGEKLLLFCQEDGKVICWLCE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
:::::::::: ::::: .: : ::::.:. :.....:::.:::::::::.::: :.: ..
XP_016 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
. ..:.:::.::. ::. ::: ::.::. : .....: :.::: : .::::::.: :
XP_016 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR
180 190 200 210 220 230
250 260 270
pF1KE3 SQWSTMELLQDMSGIMKWCVWVARSGACEL
: :.::::: ..:..:
XP_016 LQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYW
240 250 260 270 280 290
>>XP_016873950 (OMIM: 608487) PREDICTED: tripartite moti (310 aa)
initn: 914 init1: 650 opt: 1080 Z-score: 660.5 bits: 130.2 E(85289): 4.7e-30
Smith-Waterman score: 1080; 62.6% identity (86.4% similar) in 257 aa overlap (1-257:1-255)
10 20 30 40 50 60
pF1KE3 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
::: ::.::.:::::::::::::.:::::::::.:.::.:...:... . : .::::::
XP_016 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG-ESSCPVCR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
:::. :... :.:.:::::.:.::::::. :.: : : .:::::::::.:: ::::::::
XP_016 ISYQPENIRPNRHVANIVEKLREVKLSPE-GQKVDHCARHGEKLLLFCQEDGKVICWLCE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
:::::::::: ::::: .: : ::::.:. :.....:::.:::::::::.::: :.: ..
XP_016 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
. ..:.:::.::. ::. ::: ::.::. : .....: :.::: : .::::::.: :
XP_016 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR
180 190 200 210 220 230
250 260 270
pF1KE3 SQWSTMELLQDMSGIMKWCVWVARSGACEL
: :.::::: ..:..:
XP_016 LQGSVMELLQGVDGVIKRADRCPTLLGLECNGTISVHCNLHLSDSSNSPASASQVAGITG
240 250 260 270 280 290
>>XP_011518728 (OMIM: 608487) PREDICTED: tripartite moti (310 aa)
initn: 914 init1: 650 opt: 1080 Z-score: 660.5 bits: 130.2 E(85289): 4.7e-30
Smith-Waterman score: 1080; 62.6% identity (86.4% similar) in 257 aa overlap (1-257:1-255)
10 20 30 40 50 60
pF1KE3 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
::: ::.::.:::::::::::::.:::::::::.:.::.:...:... . : .::::::
XP_011 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG-ESSCPVCR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
:::. :... :.:.:::::.:.::::::. :.: : : .:::::::::.:: ::::::::
XP_011 ISYQPENIRPNRHVANIVEKLREVKLSPE-GQKVDHCARHGEKLLLFCQEDGKVICWLCE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
:::::::::: ::::: .: : ::::.:. :.....:::.:::::::::.::: :.: ..
XP_011 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
. ..:.:::.::. ::. ::: ::.::. : .....: :.::: : .::::::.: :
XP_011 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR
180 190 200 210 220 230
250 260 270
pF1KE3 SQWSTMELLQDMSGIMKWCVWVARSGACEL
: :.::::: ..:..:
XP_011 LQGSVMELLQGVDGVIKRADRCPTLLGLECNGTISVHCNLHLSDSSNSPASASQVAGITG
240 250 260 270 280 290
270 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:37:56 2016 done: Sun Nov 6 08:37:57 2016
Total Scan time: 7.880 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]