(Linear) (Six-base) MAPSORT of: KIAA1903.seq Check: 7516 from: 1 to: 3396 KIAA1903.orf With 182 enzymes: SgfI * July 15, 2010 18:28 .. AatII G_ACGT'C Cuts at: 0 1223 3396 Size: 1223 2173 AclI AA'CG_TT Cuts at: 0 1298 3396 Size: 1298 2098 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 89 1618 1868 2378 2483 2512 2765 3396 Size: 89 1529 250 510 105 29 253 631 Fragments arranged by size: 1529 631 510 253 250 105 89 29 AflIII A'CryG_T Cuts at: 0 797 1015 1643 2799 3396 Size: 797 218 628 1156 597 Fragments arranged by size: 1156 797 628 597 218 AhdI GACnn_n'nnGTC Cuts at: 0 2512 3396 Size: 2512 884 AlwNI CAG_nnn'CTG Cuts at: 0 979 1546 3396 Size: 979 567 1850 Fragments arranged by size: 1850 979 567 ApoI r'AATT_y Cuts at: 0 29 687 746 1328 1372 2479 2926 3396 Size: 29 658 59 582 44 1107 447 470 Fragments arranged by size: 1107 658 582 470 447 59 44 29 AseI AT'TA_AT Cuts at: 0 1750 3396 Size: 1750 1646 BamHI G'GATC_C Cuts at: 0 2788 3396 Size: 2788 608 BanI G'GyrC_C Cuts at: 0 2017 3396 Size: 2017 1379 BanII G_rGCy'C Cuts at: 0 732 3396 Size: 732 2664 BbsI GAAGACnn'nnnn_ Cuts at: 0 985 1769 3396 Size: 985 784 1627 Fragments arranged by size: 1627 985 784 BciVI GTATCCnnnnn_n' Cuts at: 0 1872 3396 Size: 1872 1524 BclI T'GATC_A Cuts at: 0 2859 3396 Size: 2859 537 BfrBI ATG'CAT Cuts at: 0 1994 3396 Size: 1994 1402 BglI GCCn_nnn'nGGC Cuts at: 0 2840 3396 Size: 2840 556 BglII A'GATC_T Cuts at: 0 1486 3396 Size: 1486 1910 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 26 1001 3396 Size: 26 975 2395 Fragments arranged by size: 2395 975 26 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1866 3396 Size: 1866 1530 BsaBI GATnn'nnATC Cuts at: 0 2858 3396 Size: 2858 538 BsaHI Gr'CG_yC Cuts at: 0 1220 3396 Size: 1220 2176 BsaWI w'CCGG_w Cuts at: 0 2168 3396 Size: 2168 1228 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 102 132 429 459 3396 Size: 102 30 297 30 2937 Fragments arranged by size: 2937 297 102 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 141 1085 1736 1739 3095 3396 Size: 141 944 651 3 1356 301 Fragments arranged by size: 1356 944 651 301 141 3 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 625 3396 Size: 625 2771 BsiHKAI G_wGCw'C Cuts at: 0 732 1271 1409 2419 3396 Size: 732 539 138 1010 977 Fragments arranged by size: 1010 977 732 539 138 BsmI GAATG_Cn' Cuts at: 0 98 2611 2755 3396 Size: 98 2513 144 641 Fragments arranged by size: 2513 641 144 98 Bsp1286I G_dGCh'C Cuts at: 0 732 1271 1409 2419 3396 Size: 732 539 138 1010 977 Fragments arranged by size: 1010 977 732 539 138 BsrBI CCG'CTC Cuts at: 0 1260 3396 Size: 1260 2136 BssSI C'ACGA_G Cuts at: 0 1526 3396 Size: 1526 1870 BstBI TT'CG_AA Cuts at: 0 3379 3396 Size: 3379 17 BstXI CCAn_nnnn'nTGG Cuts at: 0 1397 3396 Size: 1397 1999 BstYI r'GATC_y Cuts at: 0 1486 2575 2788 3396 Size: 1486 1089 213 608 Fragments arranged by size: 1486 1089 608 213 BtgI C'CryG_G Cuts at: 0 74 2084 3396 Size: 74 2010 1312 Fragments arranged by size: 2010 1312 74 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 2156 3396 Size: 2156 1240 BtsI GCAGTG_nn' Cuts at: 0 637 2402 3396 Size: 637 1765 994 Fragments arranged by size: 1765 994 637 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 1639 1674 3396 Size: 1639 35 1722 Fragments arranged by size: 1722 1639 35 EaeI y'GGCC_r Cuts at: 0 1922 3396 Size: 1922 1474 EarI CTCTTCn'nnn_ Cuts at: 0 1594 2531 2687 3353 3396 Size: 1594 937 156 666 43 Fragments arranged by size: 1594 937 666 156 43 EcoICRI GAG'CTC Cuts at: 0 730 3396 Size: 730 2666 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 26 89 1001 1618 1868 2378 2483 2512 Size: 26 63 912 617 250 510 105 29 Cuts at: 2512 2765 3396 Size: 253 631 Fragments arranged by size: 912 631 617 510 253 250 105 63 29 26 EcoNI CCTnn'n_nnAGG Cuts at: 0 2194 3396 Size: 2194 1202 EcoRV GAT'ATC Cuts at: 0 273 1351 3396 Size: 273 1078 2045 Fragments arranged by size: 2045 1078 273 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 2542 3396 Size: 2542 854 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 533 565 1720 1752 1989 2021 2498 2530 Size: 533 32 1155 32 237 32 477 32 Cuts at: 2530 3396 Size: 866 Fragments arranged by size: 1155 866 533 477 237 32 32 32 32 HincII GTy'rAC Cuts at: 0 2166 3396 Size: 2166 1230 HindIII A'AGCT_T Cuts at: 0 1087 1940 3396 Size: 1087 853 1456 Fragments arranged by size: 1456 1087 853 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 389 688 3088 3286 3396 Size: 389 299 2400 198 110 Fragments arranged by size: 2400 389 299 198 110 MscI TGG'CCA Cuts at: 0 1924 3396 Size: 1924 1472 MslI CAynn'nnrTG Cuts at: 0 1244 3396 Size: 1244 2152 MspA1I CmG'CkG Cuts at: 0 2014 3396 Size: 2014 1382 NcoI C'CATG_G Cuts at: 0 74 2084 3396 Size: 74 2010 1312 Fragments arranged by size: 2010 1312 74 NsiI A_TGCA'T Cuts at: 0 1996 3396 Size: 1996 1400 NspI r_CATG'y Cuts at: 0 1019 1647 2803 3121 3135 3396 Size: 1019 628 1156 318 14 261 Fragments arranged by size: 1156 1019 628 318 261 14 PciI A'CATG_T Cuts at: 0 1015 1643 2799 3396 Size: 1015 628 1156 597 Fragments arranged by size: 1156 1015 628 597 PfoI T'CCnGG_A Cuts at: 0 3014 3396 Size: 3014 382 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2192 2224 3396 Size: 2192 32 1172 Fragments arranged by size: 2192 1172 32 PsiI TTA'TAA Cuts at: 0 2288 3396 Size: 2288 1108 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 2138 2170 3396 Size: 2138 32 1226 Fragments arranged by size: 2138 1226 32 SacI G_AGCT'C Cuts at: 0 732 3396 Size: 732 2664 ScaI AGT'ACT Cuts at: 0 365 867 3396 Size: 365 502 2529 Fragments arranged by size: 2529 502 365 SexAI A'CCwGG_T Cuts at: 0 2613 2697 3396 Size: 2613 84 699 Fragments arranged by size: 2613 699 84 SfcI C'TryA_G Cuts at: 0 698 1153 1631 2726 3396 Size: 698 455 478 1095 670 Fragments arranged by size: 1095 698 670 478 455 SmlI C'TyrA_G Cuts at: 0 1881 3396 Size: 1881 1515 SphI G_CATG'C Cuts at: 0 3135 3396 Size: 3135 261 SspI AAT'ATT Cuts at: 0 341 1080 1106 2436 3396 Size: 341 739 26 1330 960 Fragments arranged by size: 1330 960 739 341 26 StyI C'CwwG_G Cuts at: 0 74 552 2084 3396 Size: 74 478 1532 1312 Fragments arranged by size: 1532 1312 478 74 TatI w'GTAC_w Cuts at: 0 363 865 1026 2971 3396 Size: 363 502 161 1945 425 Fragments arranged by size: 1945 502 425 363 161 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 102 134 959 991 3144 3176 3396 Size: 102 32 825 32 2153 32 220 Fragments arranged by size: 2153 825 220 102 32 32 32 XbaI T'CTAG_A Cuts at: 0 564 1969 3396 Size: 564 1405 1427 Fragments arranged by size: 1427 1405 564 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 2394 3396 Size: 2394 1002 XmnI GAAnn'nnTTC Cuts at: 0 184 836 1080 2525 3396 Size: 184 652 244 1445 871 Fragments arranged by size: 1445 871 652 244 184 ZraI GAC'GTC Cuts at: 0 1221 3396 Size: 1221 2175 Enzymes that do cut: AatII AclI AcuI AflIII AhdI AlwNI ApoI AseI BamHI BanI BanII BbsI BciVI BclI BfrBI BglI BglII BpmI BpuEI BsaBI BsaHI BsaWI BsaXI BseRI BsgI BsiHKAI BsmI Bsp1286I BsrBI BssSI BstBI BstXI BstYI BtgI BtgZI BtsI CspCI EaeI EarI EcoICRI Eco57MI EcoNI EcoRV FalI Hin4I HincII HindIII MmeI MscI MslI MspA1I NcoI NsiI NspI PciI PfoI PpiI PsiI PsrI SacI ScaI SexAI SfcI SmlI SphI SspI StyI TatI TstI XbaI XcmI XmnI ZraI Enzymes that do not cut: AarI AccI Acc65I AfeI AflII AgeI AleI AlfI AloI ApaI ApaLI AscI AsiSI AvaI AvrII BaeI BbeI BbvCI BcgI BlpI Bme1580I BmgBI BmrI BmtI BplI Bpu10I BsaI BsaAI BseYI BsiEI BsiWI BsmBI BspEI BspHI BspMI BsrDI BsrFI BsrGI BssHII BstAPI BstEII BstZ17I Bsu36I ClaI DraI DraIII DrdI EagI EciI EcoO109I EcoRI FseI FspI FspAI HaeII HpaI KasI KpnI MfeI MluI NaeI NarI NdeI NgoMIV NheI NotI NruI PacI PasI PflMI PmeI PmlI PpuMI PshAI PspOMI PspXI PstI PvuI PvuII RsrII SacII SalI SanDI SapI SbfI SfiI SfoI SgfI SgrAI SmaI SnaBI SpeI SrfI StuI SwaI TaqII Tth111I XhoI XmaI