FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB0444, 905 aa 1>>>pF1KB0444 905 - 905 aa - 905 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.4570+/-0.00122; mu= 11.9366+/- 0.073 mean_var=140.0896+/-27.549, 0's: 0 Z-trim(105.2): 39 B-trim: 0 in 0/51 Lambda= 0.108361 statistics sampled from 8281 (8300) to 8281 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.255), width: 16 Scan time: 3.950 The best scores are: opt bits E(32554) CCDS6948.1 TTF1 gene_id:7270|Hs108|chr9 ( 905) 5900 935.0 0 CCDS75925.1 TTF1 gene_id:7270|Hs108|chr9 ( 390) 2572 414.5 1.9e-115 >>CCDS6948.1 TTF1 gene_id:7270|Hs108|chr9 (905 aa) initn: 5900 init1: 5900 opt: 5900 Z-score: 4992.5 bits: 935.0 E(32554): 0 Smith-Waterman score: 5900; 100.0% identity (100.0% similar) in 905 aa overlap (1-905:1-905) 10 20 30 40 50 60 pF1KB0 MEGESSRFEIHTPVSDKKKKKCSIHKERPQKHSHEIFRDSSLVNEQSQITRRKKRKKDFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MEGESSRFEIHTPVSDKKKKKCSIHKERPQKHSHEIFRDSSLVNEQSQITRRKKRKKDFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 HLISSPLKKSRICDETANATSTLKKRKKRRYSALEVDEEAGVTVVLVDKENINNTPKHFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 HLISSPLKKSRICDETANATSTLKKRKKRRYSALEVDEEAGVTVVLVDKENINNTPKHFR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB0 KDVDVVCVDMSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 KDVDVVCVDMSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWES 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB0 QRARDTLPQSESHQEESWLSVGPGGEITELPASAHKNKSKKKKKKSSNREYETLAMPEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 QRARDTLPQSESHQEESWLSVGPGGEITELPASAHKNKSKKKKKKSSNREYETLAMPEGS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB0 QAGREAGTDMQESQPTVGLDDETPQLLGPTHKKKSKKKKKKKSNHQEFEALAMPEGSQVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 QAGREAGTDMQESQPTVGLDDETPQLLGPTHKKKSKKKKKKKSNHQEFEALAMPEGSQVG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB0 SEVGADMQESRPAVGLHGETAGIPAPAYKNKSKKKKKKSNHQEFEAVAMPESLESAYPEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SEVGADMQESRPAVGLHGETAGIPAPAYKNKSKKKKKKSNHQEFEAVAMPESLESAYPEG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB0 SQVGSEVGTVEGSTALKGFKESNSTKKKSKKRKLTSVKRARVSGDDFSVPSKNSESTLFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SQVGSEVGTVEGSTALKGFKESNSTKKKSKKRKLTSVKRARVSGDDFSVPSKNSESTLFD 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB0 SVEGDGAMMEEGVKSRPRQKKTQACLASKHVQEAPRLEPANEEHNVETAEDSEIRYLSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SVEGDGAMMEEGVKSRPRQKKTQACLASKHVQEAPRLEPANEEHNVETAEDSEIRYLSAD 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB0 SGDADDSDADLGSAVKQLQEFIPNIKDRATSTIKRMYRDDLERFKEFKAQGVAIKFGKFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SGDADDSDADLGSAVKQLQEFIPNIKDRATSTIKRMYRDDLERFKEFKAQGVAIKFGKFS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB0 VKENKQLEKNVEDFLALTGIESADKLLYTDRYPEEKSVITNLKRRYSFRLHIGRNIARPW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 VKENKQLEKNVEDFLALTGIESADKLLYTDRYPEEKSVITNLKRRYSFRLHIGRNIARPW 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB0 KLIYYRAKKMFDVNNYKGRYSEGDTEKLKMYHSLLGNDWKTIGEMVARSSLSVALKFSQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 KLIYYRAKKMFDVNNYKGRYSEGDTEKLKMYHSLLGNDWKTIGEMVARSSLSVALKFSQI 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB0 SSQRNRGAWSKSETRKLIKAVEEVILKKMSPQELKEVDSKLQENPESCLSIVREKLYKGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SSQRNRGAWSKSETRKLIKAVEEVILKKMSPQELKEVDSKLQENPESCLSIVREKLYKGI 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB0 SWVEVEAKVQTRNWMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIERLYEINVEDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SWVEVEAKVQTRNWMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIERLYEINVEDT 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB0 NEIDWEDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 NEIDWEDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLE 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB0 KMMEKKGTKIQTPAAPKQVFPFRDIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 KMMEKKGTKIQTPAAPKQVFPFRDIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQ 850 860 870 880 890 900 pF1KB0 GRWII ::::: CCDS69 GRWII >>CCDS75925.1 TTF1 gene_id:7270|Hs108|chr9 (390 aa) initn: 2572 init1: 2572 opt: 2572 Z-score: 2186.0 bits: 414.5 E(32554): 1.9e-115 Smith-Waterman score: 2572; 100.0% identity (100.0% similar) in 390 aa overlap (516-905:1-390) 490 500 510 520 530 540 pF1KB0 DSDADLGSAVKQLQEFIPNIKDRATSTIKRMYRDDLERFKEFKAQGVAIKFGKFSVKENK :::::::::::::::::::::::::::::: CCDS75 MYRDDLERFKEFKAQGVAIKFGKFSVKENK 10 20 30 550 560 570 580 590 600 pF1KB0 QLEKNVEDFLALTGIESADKLLYTDRYPEEKSVITNLKRRYSFRLHIGRNIARPWKLIYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 QLEKNVEDFLALTGIESADKLLYTDRYPEEKSVITNLKRRYSFRLHIGRNIARPWKLIYY 40 50 60 70 80 90 610 620 630 640 650 660 pF1KB0 RAKKMFDVNNYKGRYSEGDTEKLKMYHSLLGNDWKTIGEMVARSSLSVALKFSQISSQRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 RAKKMFDVNNYKGRYSEGDTEKLKMYHSLLGNDWKTIGEMVARSSLSVALKFSQISSQRN 100 110 120 130 140 150 670 680 690 700 710 720 pF1KB0 RGAWSKSETRKLIKAVEEVILKKMSPQELKEVDSKLQENPESCLSIVREKLYKGISWVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 RGAWSKSETRKLIKAVEEVILKKMSPQELKEVDSKLQENPESCLSIVREKLYKGISWVEV 160 170 180 190 200 210 730 740 750 760 770 780 pF1KB0 EAKVQTRNWMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIERLYEINVEDTNEIDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 EAKVQTRNWMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIERLYEINVEDTNEIDW 220 230 240 250 260 270 790 800 810 820 830 840 pF1KB0 EDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLEKMMEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 EDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLEKMMEK 280 290 300 310 320 330 850 860 870 880 890 900 pF1KB0 KGTKIQTPAAPKQVFPFRDIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQGRWII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 KGTKIQTPAAPKQVFPFRDIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQGRWII 340 350 360 370 380 390 905 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:28:12 2016 done: Sun Nov 6 20:28:13 2016 Total Scan time: 3.950 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]