Result of FASTA (omim) for
pFN21AE1697
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1697, 263 aa
1>>>pF1KE1697 263 - 263 aa - 263 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0479+/-0.000316; mu= 16.5458+/- 0.020
mean_var=65.5681+/-13.514, 0's: 0 Z-trim(116.3): 14 B-trim: 1497 in 1/59
Lambda= 0.158390
statistics sampled from 27422 (27433) to 27422 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.322), width: 16
Scan time: 6.820
The best scores are: opt bits E(85289)
NP_714919 (OMIM: 609137) receptor-transporting pro ( 263) 1875 436.8 1.9e-122
NP_001004312 (OMIM: 609138) receptor-transporting ( 225) 1284 301.7 7.6e-82
XP_016861791 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 1284 301.7 7.6e-82
XP_016861790 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 1284 301.7 7.6e-82
NP_113628 (OMIM: 607181) receptor-transporting pro ( 232) 357 89.9 4.6e-18
NP_071430 (OMIM: 609350) receptor-transporting pro ( 246) 315 80.3 3.7e-15
>>NP_714919 (OMIM: 609137) receptor-transporting protein (263 aa)
initn: 1875 init1: 1875 opt: 1875 Z-score: 2319.2 bits: 436.8 E(85289): 1.9e-122
Smith-Waterman score: 1875; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263)
10 20 30 40 50 60
pF1KE1 MRIFRPWRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_714 MRIFRPWRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSWDLIIDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_714 DSWDLIIDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_714 GSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QDNRRHRGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_714 QDNRRHRGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIP
190 200 210 220 230 240
250 260
pF1KE1 WCLFWATVLLLIIYLQFSFRSSV
:::::::::::::::::::::::
NP_714 WCLFWATVLLLIIYLQFSFRSSV
250 260
>>NP_001004312 (OMIM: 609138) receptor-transporting prot (225 aa)
initn: 1273 init1: 1124 opt: 1284 Z-score: 1590.3 bits: 301.7 E(85289): 7.6e-82
Smith-Waterman score: 1284; 82.2% identity (90.2% similar) in 225 aa overlap (37-261:1-221)
10 20 30 40 50 60
pF1KE1 WRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLI
:: :.:: ::::::::::: :::::::.::
NP_001 MCTSLTTCEWKKVFYEKMEVAKPADSWELI
10 20 30
70 80 90 100 110 120
pF1KE1 IDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMR
:::::: . :.:::::::: ::::::::::::::::: .:::::::::::::::::::::
NP_001 IDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAHVVILFHMFLDRAQRAGSVRMR
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASRQDNRRH
:::::::::::::::::::::::::::::::::::::::: : ::::::::::: :. :
NP_001 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYEEDGGQYRIHVASRPDSGPH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE1 RGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA
:.:::::::::::::::::::::::.:::: :.: .: . :.:::.:: :. ::::::
NP_001 RAEFCEACQEGIVHWKPSEKLLEEEVTTYT-SEASKP---RAQAGSGYNFLSLRWCLFWA
160 170 180 190 200
250 260
pF1KE1 TVLLLIIYLQFSFRSSV
.. ::..:::::: :
NP_001 SLCLLVVYLQFSFLSPAFF
210 220
>>XP_016861791 (OMIM: 609138) PREDICTED: receptor-transp (225 aa)
initn: 1273 init1: 1124 opt: 1284 Z-score: 1590.3 bits: 301.7 E(85289): 7.6e-82
Smith-Waterman score: 1284; 82.2% identity (90.2% similar) in 225 aa overlap (37-261:1-221)
10 20 30 40 50 60
pF1KE1 WRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLI
:: :.:: ::::::::::: :::::::.::
XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELI
10 20 30
70 80 90 100 110 120
pF1KE1 IDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMR
:::::: . :.:::::::: ::::::::::::::::: .:::::::::::::::::::::
XP_016 IDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAHVVILFHMFLDRAQRAGSVRMR
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASRQDNRRH
:::::::::::::::::::::::::::::::::::::::: : ::::::::::: :. :
XP_016 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYEEDGGQYRIHVASRPDSGPH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE1 RGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA
:.:::::::::::::::::::::::.:::: :.: .: . :.:::.:: :. ::::::
XP_016 RAEFCEACQEGIVHWKPSEKLLEEEVTTYT-SEASKP---RAQAGSGYNFLSLRWCLFWA
160 170 180 190 200
250 260
pF1KE1 TVLLLIIYLQFSFRSSV
.. ::..:::::: :
XP_016 SLCLLVVYLQFSFLSPAFF
210 220
>>XP_016861790 (OMIM: 609138) PREDICTED: receptor-transp (225 aa)
initn: 1273 init1: 1124 opt: 1284 Z-score: 1590.3 bits: 301.7 E(85289): 7.6e-82
Smith-Waterman score: 1284; 82.2% identity (90.2% similar) in 225 aa overlap (37-261:1-221)
10 20 30 40 50 60
pF1KE1 WRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLI
:: :.:: ::::::::::: :::::::.::
XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELI
10 20 30
70 80 90 100 110 120
pF1KE1 IDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMR
:::::: . :.:::::::: ::::::::::::::::: .:::::::::::::::::::::
XP_016 IDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAHVVILFHMFLDRAQRAGSVRMR
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASRQDNRRH
:::::::::::::::::::::::::::::::::::::::: : ::::::::::: :. :
XP_016 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYEEDGGQYRIHVASRPDSGPH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE1 RGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA
:.:::::::::::::::::::::::.:::: :.: .: . :.:::.:: :. ::::::
XP_016 RAEFCEACQEGIVHWKPSEKLLEEEVTTYT-SEASKP---RAQAGSGYNFLSLRWCLFWA
160 170 180 190 200
250 260
pF1KE1 TVLLLIIYLQFSFRSSV
.. ::..:::::: :
XP_016 SLCLLVVYLQFSFLSPAFF
210 220
>>NP_113628 (OMIM: 607181) receptor-transporting protein (232 aa)
initn: 369 init1: 208 opt: 357 Z-score: 445.3 bits: 89.9 E(85289): 4.6e-18
Smith-Waterman score: 357; 37.7% identity (61.6% similar) in 159 aa overlap (43-197:5-160)
20 30 40 50 60 70
pF1KE1 ALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLK
:. ::..: : :.:.:: : : : .:
NP_113 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLL
10 20 30
80 90 100 110 120 130
pF1KE1 HNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLC
:::.::: :: . . .::.:: : ..: : :..:::: .. . :.:.:::: : :
NP_113 PNVLKPGWMQYQQW-TFARFQCSSCSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRC
40 50 60 70 80 90
140 150 160 170 180
pF1KE1 YECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGG-QYRIHVASRQD---NRRHRG
.: ... . .::: .. ::. . ..:: :: : .: .: . : .
NP_113 KKCPQPLFEDPEFTQENISRILKNLVFRILKKCY--RGRFQLIEEVPMIKDISLEGPHNS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE1 EFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWATV
. :::: .:
NP_113 DNCEACLQGFCAGPIQVTSLPPSQTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNL
160 170 180 190 200 210
>>NP_071430 (OMIM: 609350) receptor-transporting protein (246 aa)
initn: 347 init1: 169 opt: 315 Z-score: 393.1 bits: 80.3 E(85289): 3.7e-15
Smith-Waterman score: 319; 32.6% identity (57.0% similar) in 172 aa overlap (46-208:8-178)
20 30 40 50 60 70
pF1KE1 LPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLKHNV
:...: : ..:::: .: : .: ::. .
NP_071 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDC
10 20 30
80 90 100 110 120 130
pF1KE1 LSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLCYEC
:. ::::: . .: : :.:: : ..: : : :: : . .. :.::::.: : : .:
NP_071 LAQGWKQYQQ-RAFGWFRCSSCQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKC
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE1 GTARLDESSMLEENIEGLVDNLITSLREQCYGE--RGGQYRIHVASRQDNRRHRGEFCEA
. .. . . .. ...::. . .. ::. : . . . . : :::
NP_071 SWSQYEMPEFSSDSTMRILSNLVQHILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEA
100 110 120 130 140 150
200 210 220 230 240
pF1KE1 CQEGIVHW-------KPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA
: :: :::..::
NP_071 CTLGICGQGLKSCMTKPSKSLLPHLKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEK
160 170 180 190 200 210
263 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 20:33:35 2016 done: Sun Nov 6 20:33:36 2016
Total Scan time: 6.820 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]