(Circular) (Six-base) MAPSORT of: pFN21AE1299.seq Check: 5182 from: 1 to: 5470 pFN21AE1299 5470 bp With 182 enzymes: SgfI * January 31, 2011 17:47 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3280 278 Size: 53 83 186 936 1744 2468 Fragments arranged by size: 2468 1744 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2813 1937 Size: 876 4594 Acc65I G'GTAC_C Cuts at: 2791 2791 Size: 5470 AclI AA'CG_TT Cuts at: 1563 3597 3970 1563 Size: 2034 373 3063 Fragments arranged by size: 3063 2034 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3533 4917 5185 1632 Size: 1901 1384 268 1917 Fragments arranged by size: 1917 1901 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5273 AflIII A'CryG_T Cuts at: 1203 4369 5346 1203 Size: 3166 977 1327 Fragments arranged by size: 3166 1327 977 AgeI A'CCGG_T Cuts at: 4301 4301 Size: 5470 AhdI GACnn_n'nnGTC Cuts at: 2379 4199 2379 Size: 1820 3650 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5470 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5470 AlwNI CAG_nnn'CTG Cuts at: 2657 3213 4785 2657 Size: 556 1572 3342 Fragments arranged by size: 3342 1572 556 ApaI G_GGCC'C Cuts at: 2038 2766 2038 Size: 728 4742 ApaLI G'TGCA_C Cuts at: 2256 3527 4683 2256 Size: 1271 1156 3043 Fragments arranged by size: 3043 1271 1156 ApoI r'AATT_y Cuts at: 1493 2156 2231 2779 3005 3157 5266 1493 Size: 663 75 548 226 152 2109 1697 Fragments arranged by size: 2109 1697 663 548 226 152 75 AseI AT'TA_AT Cuts at: 160 1032 4024 160 Size: 872 2992 1606 Fragments arranged by size: 2992 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5470 AvaI C'yCGr_G Cuts at: 1870 1943 2795 1870 Size: 73 852 4545 Fragments arranged by size: 4545 852 73 BamHI G'GATC_C Cuts at: 2800 3167 2800 Size: 367 5103 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2791 4246 618 Size: 325 217 627 1004 1455 1842 Fragments arranged by size: 1842 1455 1004 627 325 217 BanII G_rGCy'C Cuts at: 1391 2038 2063 2649 2766 2789 1391 Size: 647 25 586 117 23 4072 Fragments arranged by size: 4072 647 586 117 25 23 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2082 2707 928 Size: 971 183 625 3691 Fragments arranged by size: 3691 971 625 183 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3661 3695 1903 Size: 34 1724 34 3678 Fragments arranged by size: 3678 1724 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3362 4572 3362 Size: 1210 4260 BclI T'GATC_A Cuts at: 1548 2506 1548 Size: 958 4512 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2694 4081 136 Size: 107 122 71 631 605 1022 1387 1525 Fragments arranged by size: 1525 1387 1022 631 605 122 107 71 BglII A'GATC_T Cuts at: 5465 5465 Size: 5470 BlpI GC'TnA_GC Cuts at: 2447 2887 2447 Size: 440 5030 Bme1580I G_kGCm'C Cuts at: 1790 2038 2260 2460 2671 2711 2766 3531 4687 Size: 248 222 200 211 40 55 765 1156 Cuts at: 4687 1790 Size: 2573 Fragments arranged by size: 2573 1156 765 248 222 211 200 55 40 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5470 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2387 2593 2623 Size: 416 53 83 399 24 970 206 30 Cuts at: 2623 3201 4159 442 Size: 578 958 1753 Fragments arranged by size: 1753 970 958 578 416 399 206 83 53 30 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5470 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2210 4130 1239 Size: 971 1920 2579 Fragments arranged by size: 2579 1920 971 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3595 4460 4758 3595 Size: 865 298 4307 Fragments arranged by size: 4307 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2477 4133 882 Size: 617 978 1656 2219 Fragments arranged by size: 2219 1656 978 617 BsaAI yAC'GTr Cuts at: 493 1204 2182 3261 493 Size: 711 978 1079 2702 Fragments arranged by size: 2702 1079 978 711 BsaBI GATnn'nnATC Cuts at: 5464 5464 Size: 5470 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3277 3659 4294 275 Size: 53 83 186 936 1744 382 635 1451 Fragments arranged by size: 1744 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3903 4301 4575 4722 5133 3903 Size: 398 274 147 411 4240 Fragments arranged by size: 4240 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5245 Fragments arranged by size: 5245 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5470 BseYI C'CCAG_C Cuts at: 2029 4673 5169 2029 Size: 2644 496 2330 Fragments arranged by size: 2644 2330 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4897 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2920 3681 4709 1540 Size: 275 186 919 761 1028 2301 Fragments arranged by size: 2301 1028 919 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2260 2583 2649 3531 3616 4687 2260 Size: 323 66 882 85 1071 3043 Fragments arranged by size: 3043 1071 882 323 85 66 BsmI GAATG_Cn' Cuts at: 2981 3074 2981 Size: 93 5377 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2038 2063 2260 2460 2583 2649 2671 Size: 399 248 25 197 200 123 66 22 Cuts at: 2671 2711 2766 2789 3531 3616 4687 1391 Size: 40 55 23 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 248 200 197 123 85 66 55 40 25 23 22 BspEI T'CCGG_A Cuts at: 5133 5133 Size: 5470 BspHI T'CATG_A Cuts at: 2298 3359 5089 2298 Size: 1061 1730 2679 Fragments arranged by size: 2679 1730 1061 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2825 844 Size: 1981 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3357 1394 Size: 429 1534 3507 Fragments arranged by size: 3507 1534 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2458 3965 4139 65 Size: 1183 1210 1507 174 1396 Fragments arranged by size: 1507 1396 1210 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4114 4301 1700 Size: 110 2304 187 2869 Fragments arranged by size: 2869 2304 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5470 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5470 BssSI C'ACGA_G Cuts at: 2690 3530 4542 2690 Size: 840 1012 3618 Fragments arranged by size: 3618 1012 840 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5470 BstBI TT'CG_AA Cuts at: 4274 4274 Size: 5470 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5470 BstYI r'GATC_y Cuts at: 1972 2800 3167 3552 3569 5021 5107 5119 5465 Size: 828 367 385 17 1452 86 12 346 Cuts at: 5465 1972 Size: 1977 Fragments arranged by size: 1977 1452 828 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2343 2343 Size: 5470 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4918 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4731 Fragments arranged by size: 4731 683 56 BtsI GCAGTG_nn' Cuts at: 2986 3780 3800 2986 Size: 794 20 4656 Fragments arranged by size: 4656 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5470 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5435 DraI TTT'AAA Cuts at: 2774 2774 Size: 5470 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4477 809 Size: 507 3161 1802 Fragments arranged by size: 3161 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2140 2917 3806 Size: 54 1425 50 275 18 310 777 889 Cuts at: 3806 5435 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 777 310 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2917 1537 Size: 275 1105 4090 Fragments arranged by size: 4090 1105 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2607 3400 1353 Size: 1254 793 3423 Fragments arranged by size: 3423 1254 793 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4057 4431 4577 387 Size: 1064 138 2468 374 146 1280 Fragments arranged by size: 2468 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2647 2647 Size: 5470 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2210 3533 4130 4917 5185 1239 Size: 393 578 1323 597 787 268 1524 Fragments arranged by size: 1524 1323 787 597 578 393 268 EcoO109I rG'GnC_Cy Cuts at: 2034 2035 2587 2762 2763 2034 Size: 1 552 175 1 4741 Fragments arranged by size: 4741 552 175 1 1 EcoRI G'AATT_C Cuts at: 2779 3157 2779 Size: 378 5092 FspI TGC'GCA Cuts at: 3976 3976 Size: 5470 HaeII r_GCGC'y Cuts at: 1678 4617 1678 Size: 2939 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2365 2397 4111 4143 4185 Size: 32 135 32 793 32 1714 32 42 Cuts at: 4185 4217 1373 Size: 32 2626 Fragments arranged by size: 2626 1714 793 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2434 2814 3060 669 Size: 988 281 496 380 246 3079 Fragments arranged by size: 3079 988 496 380 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5470 HpaI GTT'AAC Cuts at: 3060 3060 Size: 5470 KpnI G_GTAC'C Cuts at: 2795 2795 Size: 5470 MfeI C'AATT_G Cuts at: 3069 3069 Size: 5470 MluI A'CGCG_T Cuts at: 5346 5346 Size: 5470 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4584 4768 1305 Size: 3279 184 2007 Fragments arranged by size: 3279 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2142 10 Size: 54 1425 343 310 3338 Fragments arranged by size: 3338 1425 343 310 54 MslI CAynn'nnrTG Cuts at: 518 1166 2054 2273 2702 3428 3787 3946 518 Size: 648 888 219 429 726 359 159 2042 Fragments arranged by size: 2042 888 726 648 429 359 219 159 MspA1I CmG'CkG Cuts at: 1606 2324 2886 3563 4711 4956 1606 Size: 718 562 677 1148 245 2120 Fragments arranged by size: 2120 1148 718 677 562 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4918 NdeI CA'TA_TG Cuts at: 387 387 Size: 5470 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5470 NotI GC'GGCC_GC Cuts at: 2917 2917 Size: 5470 NspI r_CATG'y Cuts at: 1132 1229 2828 4373 1132 Size: 97 1599 1545 2229 Fragments arranged by size: 2229 1599 1545 97 PasI CC'CwG_GG Cuts at: 1348 2671 1348 Size: 1323 4147 PciI A'CATG_T Cuts at: 4369 4369 Size: 5470 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5470 PmeI GTTT'AAAC Cuts at: 2774 2774 Size: 5470 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3539 3571 5052 5084 3539 Size: 32 1481 32 3925 Fragments arranged by size: 3925 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2660 1613 Size: 1047 4423 PsiI TTA'TAA Cuts at: 3040 3040 Size: 5470 PspOMI G'GGCC_C Cuts at: 2034 2762 2034 Size: 728 4742 PstI C_TGCA'G Cuts at: 830 2822 830 Size: 1992 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5470 SacI G_AGCT'C Cuts at: 2649 2649 Size: 5470 SalI G'TCGA_C Cuts at: 1936 2812 1936 Size: 876 4594 SbfI CC_TGCA'GG Cuts at: 2822 2822 Size: 5470 ScaI AGT'ACT Cuts at: 3718 5430 3718 Size: 1712 3758 SfcI C'TryA_G Cuts at: 826 1045 2818 3953 4634 4825 826 Size: 219 1773 1135 681 191 1471 Fragments arranged by size: 1773 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5470 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5470 SmaI CCC'GGG Cuts at: 1872 2797 1872 Size: 925 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3574 4475 4737 820 Size: 197 926 1631 901 262 1553 Fragments arranged by size: 1631 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3261 493 Size: 2768 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5470 SphI G_CATG'C Cuts at: 1132 2828 1132 Size: 1696 3774 SspI AAT'ATT Cuts at: 5 52 3394 5 Size: 47 3342 2081 Fragments arranged by size: 3342 2081 47 StuI AGG'CCT Cuts at: 1517 2730 1517 Size: 1213 4257 StyI C'CwwG_G Cuts at: 513 1065 2725 2758 2766 2909 513 Size: 552 1660 33 8 143 3074 Fragments arranged by size: 3074 1660 552 143 33 8 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2165 3497 3514 3667 3852 4297 325 Size: 1255 585 1332 17 153 185 445 1498 Fragments arranged by size: 1498 1332 1255 585 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3716 5428 96 Size: 274 80 33 51 1443 1739 1712 138 Fragments arranged by size: 1739 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5430 5462 5430 Size: 32 5438 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5470 XbaI T'CTAG_A Cuts at: 2806 2806 Size: 5470 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2159 2159 Size: 5470 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5470 XmaI C'CCGG_G Cuts at: 1870 2795 1870 Size: 925 4545 XmnI GAAnn'nnTTC Cuts at: 3599 3599 Size: 5470 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3278 276 Size: 53 83 186 936 1744 2468 Fragments arranged by size: 2468 1744 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI PvuII RsrII SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI