FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1299, 255 aa 1>>>pF1KE1299 255 - 255 aa - 255 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1475+/-0.000371; mu= 15.3930+/- 0.023 mean_var=68.2706+/-14.306, 0's: 0 Z-trim(113.6): 93 B-trim: 575 in 1/52 Lambda= 0.155223 statistics sampled from 22875 (22974) to 22875 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.269), width: 16 Scan time: 6.660 The best scores are: opt bits E(85289) NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 1697 388.9 4.7e-108 NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 1514 347.9 1e-95 XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 1375 316.7 2e-86 NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 970 226.1 4.9e-59 NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 970 226.1 4.9e-59 NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 970 226.1 4.9e-59 NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 958 223.4 3e-58 NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 938 218.9 6.9e-57 NP_006111 (OMIM: 142855) HLA class II histocompati ( 261) 362 90.0 4.7e-18 NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 244 63.5 3.8e-10 NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 241 62.9 6.9e-10 XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 241 62.9 7.1e-10 XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 238 62.2 1.1e-09 NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 235 61.5 1.7e-09 NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 227 59.7 5.9e-09 XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 225 59.3 8.3e-09 NP_002116 (OMIM: 604776) major histocompatibility ( 266) 224 59.1 9.7e-09 XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 224 59.1 1e-08 NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 223 58.8 1.1e-08 NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 221 58.4 1.6e-08 XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 218 57.7 2.1e-08 NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 219 57.9 2.1e-08 NP_072049 (OMIM: 612735) major histocompatibility ( 266) 213 56.6 5.3e-08 NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 210 55.9 8.3e-08 NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 194 52.3 9.6e-07 NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 193 52.1 1.2e-06 NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 194 52.4 1.2e-06 NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 190 51.3 1.3e-06 NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 193 52.2 1.4e-06 XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 191 51.6 1.4e-06 NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 193 52.2 1.5e-06 XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 193 52.2 1.5e-06 XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 192 52.0 1.7e-06 NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 190 51.4 1.8e-06 XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 191 51.7 1.9e-06 NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 191 51.7 2e-06 XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 191 51.8 2.2e-06 XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 191 51.8 2.3e-06 XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 191 51.8 2.4e-06 NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 191 51.8 2.4e-06 NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 189 51.3 2.7e-06 NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 189 51.3 2.8e-06 NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 189 51.3 2.8e-06 XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 185 50.5 6.1e-06 XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 181 49.4 7.2e-06 XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 181 49.4 7.2e-06 NP_064455 (OMIM: 146770,613500) immunoglobulin lam ( 213) 179 48.9 8.7e-06 XP_011528471 (OMIM: 146770,613500) PREDICTED: immu ( 214) 179 48.9 8.8e-06 XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 177 48.5 1.4e-05 NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 177 48.6 1.6e-05 >>NP_002113 (OMIM: 146880,212750) HLA class II histocomp (255 aa) initn: 1697 init1: 1697 opt: 1697 Z-score: 2060.9 bits: 388.9 E(85289): 4.7e-108 Smith-Waterman score: 1697; 98.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255) 10 20 30 40 50 60 pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDEQFYV :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: NP_002 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYLTFL :::::::::::::::::::::::::::::::..::::::::::::::::::::::::::: NP_002 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: NP_002 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 190 200 210 220 230 240 250 pF1KE1 QGLRSVGASRHQGPL ::::::::::::::: NP_002 QGLRSVGASRHQGPL 250 >>NP_064440 (OMIM: 613503) HLA class II histocompatibili (255 aa) initn: 1514 init1: 1514 opt: 1514 Z-score: 1839.4 bits: 347.9 E(85289): 1e-95 Smith-Waterman score: 1514; 88.6% identity (96.5% similar) in 255 aa overlap (1-255:1-255) 10 20 30 40 50 60 pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDEQFYV :::::::::::::::.::::::::::::::::: :::.:: .:::::.::::::::.::: NP_064 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK ::: :::.:. : :::: .::::.:::::::.::.:..:... ::::::::::::::::: NP_064 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYLTFL :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: NP_064 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII :::::::::::::::::.::::::::::::::::::::.::::::::::.:::::::::: NP_064 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 190 200 210 220 230 240 250 pF1KE1 QGLRSVGASRHQGPL ::::::::::::: : NP_064 QGLRSVGASRHQGLL 250 >>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas (206 aa) initn: 1375 init1: 1375 opt: 1375 Z-score: 1672.5 bits: 316.7 E(85289): 2e-86 Smith-Waterman score: 1375; 98.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDEQFYV :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: XP_006 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYLTFL :::::::::::::::::::::::::::::::..::::::::::::::::::::::::::: XP_006 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII :::::::::::::::::::::::: XP_006 PSADEIYDCKVEHWGLDQPLLKHWVE 190 200 >>NP_291032 (OMIM: 142880) HLA class II histocompatibili (260 aa) initn: 925 init1: 888 opt: 970 Z-score: 1180.9 bits: 226.1 E(85289): 4.9e-59 Smith-Waterman score: 970; 57.6% identity (78.8% similar) in 255 aa overlap (1-255:7-260) 10 20 30 40 50 pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDG :. .:..: ::.:. ..: :. : :::: : . . : . :.:.: ::: NP_291 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHV-STYAAFVQTHRPTGEFMFEFDE 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPE ::.:::::.::::.:. ::.. .:. ::.: :.:. ..::: .:.: : : :::. :: NP_291 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 VTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKI :::: : :: ::::::::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :. NP_291 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 SYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV ::::.:::...:::.::::::::::::::: . : : : ::::.::::: .:::::.: NP_291 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV 180 190 200 210 220 230 240 250 pF1KE1 GTVFIIQGLRSVGASRHQGPL :::.::..::: : :: : NP_291 GTVLIIKSLRSGHDPRAQGTL 240 250 260 >>NP_001229453 (OMIM: 142880) HLA class II histocompatib (260 aa) initn: 925 init1: 888 opt: 970 Z-score: 1180.9 bits: 226.1 E(85289): 4.9e-59 Smith-Waterman score: 970; 57.6% identity (78.8% similar) in 255 aa overlap (1-255:7-260) 10 20 30 40 50 pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDG :. .:..: ::.:. ..: :. : :::: : . . : . :.:.: ::: NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHV-STYAAFVQTHRPTGEFMFEFDE 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPE ::.:::::.::::.:. ::.. .:. ::.: :.:. ..::: .:.: : : :::. :: NP_001 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 VTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKI :::: : :: ::::::::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :. NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 SYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV ::::.:::...:::.::::::::::::::: . : : : ::::.::::: .:::::.: NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV 180 190 200 210 220 230 240 250 pF1KE1 GTVFIIQGLRSVGASRHQGPL :::.::..::: : :: : NP_001 GTVLIIKSLRSGHDPRAQGTL 240 250 260 >>NP_001229454 (OMIM: 142880) HLA class II histocompatib (260 aa) initn: 925 init1: 888 opt: 970 Z-score: 1180.9 bits: 226.1 E(85289): 4.9e-59 Smith-Waterman score: 970; 57.6% identity (78.8% similar) in 255 aa overlap (1-255:7-260) 10 20 30 40 50 pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDG :. .:..: ::.:. ..: :. : :::: : . . : . :.:.: ::: NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHV-STYAAFVQTHRPTGEFMFEFDE 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPE ::.:::::.::::.:. ::.. .:. ::.: :.:. ..::: .:.: : : :::. :: NP_001 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 VTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKI :::: : :: ::::::::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :. NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 SYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV ::::.:::...:::.::::::::::::::: . : : : ::::.::::: .:::::.: NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV 180 190 200 210 220 230 240 250 pF1KE1 GTVFIIQGLRSVGASRHQGPL :::.::..::: : :: : NP_001 GTVLIIKSLRSGHDPRAQGTL 240 250 260 >>NP_002110 (OMIM: 142930) HLA class II histocompatibili (250 aa) initn: 965 init1: 943 opt: 958 Z-score: 1166.6 bits: 223.4 E(85289): 3e-58 Smith-Waterman score: 958; 57.4% identity (79.3% similar) in 242 aa overlap (1-242:1-242) 10 20 30 40 50 60 pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDEQFYV : : .:.:: .: :..:: . :::..: : .:: :: ::::::::: .. : : NP_002 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK ::.:.:..:: :::. :. :::::.: ..:. : .:.:...: : . : : :.:::. : NP_002 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYLTFL : : ::::: :::.::::::::.::::: ::..:::::..::: :. :: : :. :: :. NP_002 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII :::...:::.::::::: :::.::: ..: : . ::.::::::..::::..::::.:: NP_002 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 190 200 210 220 230 240 250 pF1KE1 QGLRSVGASRHQGPL .: NP_002 MGTYVSSVPR 250 >>NP_061984 (OMIM: 142860) HLA class II histocompatibili (254 aa) initn: 940 init1: 922 opt: 938 Z-score: 1142.3 bits: 218.9 E(85289): 6.9e-57 Smith-Waterman score: 938; 54.7% identity (77.9% similar) in 258 aa overlap (1-255:1-254) 10 20 30 40 50 pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFY-GP--SGQFTHEFDGDEQ : .. . .:: . ....:: . : .:: . .:: .: ::.: .::::: NP_061 MAISGVPVLGFFIIAVLMSAQESWAIKEEHV----IIQAEFYLNPDQSGEFMFDFDGDEI 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTV :.::. ::::.:: ::..:..:. :::: :.:: : ::.:: :: : : :: ::::: NP_061 FHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTV 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 FSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYL ...::: : .::.:::..:.. :::::.::: ::. :: ::::: :: . :: : :. :: NP_061 LTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYL 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 TFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTV ::::....:::.:::::::.::::::: . :.:. : ::.:::::::.::::::..::. NP_061 PFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTI 180 190 200 210 220 230 240 250 pF1KE1 FIIQGLRSVGASRHQGPL :::.:::. .:....::: NP_061 FIIKGLRKSNAAERRGPL 240 250 >>NP_006111 (OMIM: 142855) HLA class II histocompatibili (261 aa) initn: 346 init1: 141 opt: 362 Z-score: 445.0 bits: 90.0 E(85289): 4.7e-18 Smith-Waterman score: 362; 32.4% identity (64.2% similar) in 204 aa overlap (44-240:55-252) 20 30 40 50 60 70 pF1KE1 LTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDEQFYVDLEKKETAWRWPE :: ... .: :. :. :. .. . : :: NP_006 WAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPE 30 40 50 60 70 80 80 90 100 110 120 pF1KE1 FSKFGGFDPQGALRNMAVAKHNLNIMIKRYN-----STAATNEVPEVTVFSKSPVTLGQP :. .. . :: . :. . ::.. . . .. : . ::. .:. .:.: NP_006 FADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKP 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE1 NTLICLVDNIFPPVVNITWLSNGHAV-TEGVSETSFLSKSDH-SFFKISYLTFLPSADEI :::.:.:.:.:::.....: . :.: .:: . : :.: : :: .:::.: : ..: NP_006 NTLVCFVSNLFPPMLTVNW--QHHSVPVEGFGPT-FVSAVDGLSFQAFSYLNFTPEPSDI 150 160 170 180 190 190 200 210 220 230 240 pF1KE1 YDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIQGLRSV ..: : : . .: :. : :.: :.:.:......:..::.:: :.:: NP_006 FSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIVGIVLIIYFRKPC 200 210 220 230 240 250 250 pF1KE1 GASRHQGPL NP_006 SGD 260 >>NP_001185787 (OMIM: 615161) HLA class II histocompatib (227 aa) initn: 158 init1: 140 opt: 244 Z-score: 303.1 bits: 63.5 E(85289): 3.8e-10 Smith-Waterman score: 244; 27.3% identity (58.2% similar) in 165 aa overlap (52-215:68-226) 30 40 50 60 70 80 pF1KE1 GGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDE-QFYVDLEKKETAWRWPEFSKFGGF ::.: .: . : .. : ... : . NP_001 QFKGMCYFTNGTERVRGVARYIYNREEYGRFDSDVGEFQAVTELGRSIEDWNNYKDF--L 40 50 60 70 80 90 90 100 110 120 130 140 pF1KE1 DPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFP . . : . : .:: . .. .: . : ::. . .:.. : :.: : ...: NP_001 EQERAAVD-KVCRHNYEAELR---TTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYP 100 110 120 130 140 150 150 160 170 180 190 200 pF1KE1 PVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPL ... :. : . : :: ::.. ..: .: . .: . :. .:: :.::: .:..:. NP_001 AQIKVRWFRNDQEETAGVVSTSLIRNGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPI 160 170 180 190 200 210 210 220 230 240 250 pF1KE1 LKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL .:.:. : : . : NP_001 TVEWRPRGPPPAGLLH 220 255 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:36:22 2016 done: Sun Nov 6 20:36:24 2016 Total Scan time: 6.660 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]