FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1953, 509 aa 1>>>pF1KE1953 509 - 509 aa - 509 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4992+/-0.000982; mu= 17.2693+/- 0.059 mean_var=66.9712+/-13.451, 0's: 0 Z-trim(103.7): 21 B-trim: 0 in 0/51 Lambda= 0.156722 statistics sampled from 7514 (7518) to 7514 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.231), width: 16 Scan time: 3.110 The best scores are: opt bits E(32554) CCDS32092.1 TRMT5 gene_id:57570|Hs108|chr14 ( 509) 3364 769.9 0 >>CCDS32092.1 TRMT5 gene_id:57570|Hs108|chr14 (509 aa) initn: 3364 init1: 3364 opt: 3364 Z-score: 4109.1 bits: 769.9 E(32554): 0 Smith-Waterman score: 3364; 99.8% identity (100.0% similar) in 509 aa overlap (1-509:1-509) 10 20 30 40 50 60 pF1KE1 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEFLPIVHCYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEFLPIVHCYS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 FSKDANPVEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 FSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN 430 440 450 460 470 480 490 500 pF1KE1 PENHEDPPLKRQRTAEAFSDEKTQIVSNT ::::::::::::::::::::::::::::: CCDS32 PENHEDPPLKRQRTAEAFSDEKTQIVSNT 490 500 509 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:39:43 2016 done: Sun Nov 6 20:39:43 2016 Total Scan time: 3.110 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]