(Linear) (Six-base) MAPSORT of: KIAA0928.seq Check: 6412 from: 1 to: 5766 KIAA0928.orf With 182 enzymes: SgfI * July 15, 2010 18:28 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 1101 5484 5766 Size: 1101 4383 282 Fragments arranged by size: 4383 1101 282 AccI GT'mk_AC Cuts at: 0 736 2740 5766 Size: 736 2004 3026 Fragments arranged by size: 3026 2004 736 AclI AA'CG_TT Cuts at: 0 3463 5766 Size: 3463 2303 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 249 2405 2729 3326 3877 4783 5766 Size: 249 2156 324 597 551 906 983 Fragments arranged by size: 2156 983 906 597 551 324 249 AfeI AGC'GCT Cuts at: 0 3032 5107 5766 Size: 3032 2075 659 Fragments arranged by size: 3032 2075 659 AflII C'TTAA_G Cuts at: 0 688 5766 Size: 688 5078 AhdI GACnn_n'nnGTC Cuts at: 0 3444 5205 5766 Size: 3444 1761 561 Fragments arranged by size: 3444 1761 561 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 3481 4676 5766 Size: 3481 1195 1090 Fragments arranged by size: 3481 1195 1090 AlwNI CAG_nnn'CTG Cuts at: 0 2614 2958 3096 4058 5590 5766 Size: 2614 344 138 962 1532 176 Fragments arranged by size: 2614 1532 962 344 176 138 ApoI r'AATT_y Cuts at: 0 683 1027 1111 1296 1489 1519 2596 2683 Size: 683 344 84 185 193 30 1077 87 Cuts at: 2683 2875 3660 4824 5001 5113 5596 5665 5766 Size: 192 785 1164 177 112 483 69 101 Fragments arranged by size: 1164 1077 785 683 483 344 193 192 185 177 112 101 87 84 69 30 AseI AT'TA_AT Cuts at: 0 3524 5766 Size: 3524 2242 AvaI C'yCGr_G Cuts at: 0 1964 4817 5184 5766 Size: 1964 2853 367 582 Fragments arranged by size: 2853 1964 582 367 BamHI G'GATC_C Cuts at: 0 4536 5766 Size: 4536 1230 BanI G'GyrC_C Cuts at: 0 1662 5449 5766 Size: 1662 3787 317 Fragments arranged by size: 3787 1662 317 BanII G_rGCy'C Cuts at: 0 3216 3841 4293 5294 5724 5766 Size: 3216 625 452 1001 430 42 Fragments arranged by size: 3216 1001 625 452 430 42 BbsI GAAGACnn'nnnn_ Cuts at: 0 214 1727 2220 5171 5766 Size: 214 1513 493 2951 595 Fragments arranged by size: 2951 1513 595 493 214 BbvCI CC'TCA_GC Cuts at: 0 25 5766 Size: 25 5741 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 2222 2256 5766 Size: 2222 34 3510 Fragments arranged by size: 3510 2222 34 BciVI GTATCCnnnnn_n' Cuts at: 0 1686 5766 Size: 1686 4080 BclI T'GATC_A Cuts at: 0 2292 2817 4335 4950 5766 Size: 2292 525 1518 615 816 Fragments arranged by size: 2292 1518 816 615 525 BfrBI ATG'CAT Cuts at: 0 391 5766 Size: 391 5375 BglII A'GATC_T Cuts at: 0 351 1751 3510 5371 5766 Size: 351 1400 1759 1861 395 Fragments arranged by size: 1861 1759 1400 395 351 BlpI GC'TnA_GC Cuts at: 0 3469 4736 5766 Size: 3469 1267 1030 Fragments arranged by size: 3469 1267 1030 Bme1580I G_kGCm'C Cuts at: 0 1665 4813 5766 Size: 1665 3148 953 Fragments arranged by size: 3148 1665 953 BmrI ACTGGGnnnn_n' Cuts at: 0 2723 4765 5766 Size: 2723 2042 1001 Fragments arranged by size: 2723 2042 1001 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 1104 4751 5766 Size: 1104 3647 1015 Fragments arranged by size: 3647 1104 1015 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 2486 2643 3955 4348 5035 5500 5766 Size: 2486 157 1312 393 687 465 266 Fragments arranged by size: 2486 1312 687 465 393 266 157 Bpu10I CC'TnA_GC Cuts at: 0 25 201 5288 5365 5766 Size: 25 176 5087 77 401 Fragments arranged by size: 5087 401 176 77 25 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 340 1776 2548 3796 3843 5350 5766 Size: 340 1436 772 1248 47 1507 416 Fragments arranged by size: 1507 1436 1248 772 416 340 47 BsaI GGTCTCn'nnnn_ Cuts at: 0 1528 2191 5766 Size: 1528 663 3575 Fragments arranged by size: 3575 1528 663 BsaBI GATnn'nnATC Cuts at: 0 2279 5766 Size: 2279 3487 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 4373 4403 5766 Size: 4373 30 1363 Fragments arranged by size: 4373 1363 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 1027 2185 3217 3327 3411 3846 4267 4270 Size: 1027 1158 1032 110 84 435 421 3 Cuts at: 4270 4279 4282 4285 5392 5766 Size: 9 3 3 1107 374 Fragments arranged by size: 1158 1107 1032 1027 435 421 374 110 84 9 3 3 3 BseYI C'CCAG_C Cuts at: 0 3163 3686 3691 4096 4698 5766 Size: 3163 523 5 405 602 1068 Fragments arranged by size: 3163 1068 602 523 405 5 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 971 1003 2089 2573 3380 5338 5766 Size: 971 32 1086 484 807 1958 428 Fragments arranged by size: 1958 1086 971 807 484 428 32 BsiHKAI G_wGCw'C Cuts at: 0 1085 1530 3812 4772 5294 5766 Size: 1085 445 2282 960 522 472 Fragments arranged by size: 2282 1085 960 522 472 445 BsmI GAATG_Cn' Cuts at: 0 2723 5766 Size: 2723 3043 Bsp1286I G_dGCh'C Cuts at: 0 1085 1530 1665 3216 3812 3841 4293 4772 Size: 1085 445 135 1551 596 29 452 479 Cuts at: 4772 4813 5294 5724 5766 Size: 41 481 430 42 Fragments arranged by size: 1551 1085 596 481 479 452 445 430 135 42 41 29 BspHI T'CATG_A Cuts at: 0 47 111 3435 5766 Size: 47 64 3324 2331 Fragments arranged by size: 3324 2331 64 47 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1101 1550 2595 5210 5484 5766 Size: 1101 449 1045 2615 274 282 Fragments arranged by size: 2615 1101 1045 449 282 274 BsrBI CCG'CTC Cuts at: 0 3939 5766 Size: 3939 1827 BsrDI GCAATG_nn' Cuts at: 0 4529 5766 Size: 4529 1237 BsrGI T'GTAC_A Cuts at: 0 861 2453 2849 5766 Size: 861 1592 396 2917 Fragments arranged by size: 2917 1592 861 396 BssSI C'ACGA_G Cuts at: 0 1868 5766 Size: 1868 3898 BstBI TT'CG_AA Cuts at: 0 895 5766 Size: 895 4871 BstEII G'GTnAC_C Cuts at: 0 2472 5766 Size: 2472 3294 BstXI CCAn_nnnn'nTGG Cuts at: 0 2667 4104 5460 5766 Size: 2667 1437 1356 306 Fragments arranged by size: 2667 1437 1356 306 BstYI r'GATC_y Cuts at: 0 351 1401 1751 3510 4536 5371 5766 Size: 351 1050 350 1759 1026 835 395 Fragments arranged by size: 1759 1050 1026 835 395 351 350 BstZ17I GTA'TAC Cuts at: 0 737 2741 5766 Size: 737 2004 3025 Fragments arranged by size: 3025 2004 737 Bsu36I CC'TnA_GG Cuts at: 0 1054 4464 5750 5766 Size: 1054 3410 1286 16 Fragments arranged by size: 3410 1286 1054 16 BtgI C'CryG_G Cuts at: 0 91 5170 5420 5766 Size: 91 5079 250 346 Fragments arranged by size: 5079 346 250 91 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 3242 3710 5222 5766 Size: 3242 468 1512 544 Fragments arranged by size: 3242 1512 544 468 BtsI GCAGTG_nn' Cuts at: 0 2245 2956 3051 3183 4660 5766 Size: 2245 711 95 132 1477 1106 Fragments arranged by size: 2245 1477 1106 711 132 95 ClaI AT'CG_AT Cuts at: 0 1629 2829 5766 Size: 1629 1200 2937 Fragments arranged by size: 2937 1629 1200 DraI TTT'AAA Cuts at: 0 629 2601 2682 2766 3968 5670 5766 Size: 629 1972 81 84 1202 1702 96 Fragments arranged by size: 1972 1702 1202 629 96 84 81 DraIII CAC_nnn'GTG Cuts at: 0 1075 5766 Size: 1075 4691 DrdI GACnn_nn'nnGTC Cuts at: 0 721 5629 5766 Size: 721 4908 137 Fragments arranged by size: 4908 721 137 EaeI y'GGCC_r Cuts at: 0 1886 2417 3773 4877 5515 5766 Size: 1886 531 1356 1104 638 251 Fragments arranged by size: 1886 1356 1104 638 531 251 EarI CTCTTCn'nnn_ Cuts at: 0 1073 1499 1562 1647 2027 2162 2189 3049 Size: 1073 426 63 85 380 135 27 860 Cuts at: 3049 3345 4295 4896 5299 5381 5390 5712 5766 Size: 296 950 601 403 82 9 322 54 Fragments arranged by size: 1073 950 860 601 426 403 380 322 296 135 85 82 63 54 27 9 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 2382 5766 Size: 2382 3384 EcoICRI GAG'CTC Cuts at: 0 5292 5766 Size: 5292 474 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 249 2405 2486 2643 2729 3326 3877 3955 Size: 249 2156 81 157 86 597 551 78 Cuts at: 3955 4348 4783 5035 5500 5766 Size: 393 435 252 465 266 Fragments arranged by size: 2156 597 551 465 435 393 266 252 249 157 86 81 78 EcoNI CCTnn'n_nnAGG Cuts at: 0 5050 5766 Size: 5050 716 EcoO109I rG'GnC_Cy Cuts at: 0 73 940 4803 5190 5766 Size: 73 867 3863 387 576 Fragments arranged by size: 3863 867 576 387 73 EcoRI G'AATT_C Cuts at: 0 1489 5113 5766 Size: 1489 3624 653 Fragments arranged by size: 3624 1489 653 EcoRV GAT'ATC Cuts at: 0 2806 5766 Size: 2806 2960 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 29 847 1528 1741 2191 5766 Size: 29 818 681 213 450 3575 Fragments arranged by size: 3575 818 681 450 213 29 FspI TGC'GCA Cuts at: 0 4013 5766 Size: 4013 1753 FspAI rTGC'GCAy Cuts at: 0 4013 5766 Size: 4013 1753 HaeII r_GCGC'y Cuts at: 0 3034 5109 5766 Size: 3034 2075 657 Fragments arranged by size: 3034 2075 657 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 1862 1894 2962 2994 3298 3330 3430 3462 Size: 1862 32 1068 32 304 32 100 32 Cuts at: 3462 4495 4527 5191 5223 5766 Size: 1033 32 664 32 543 Fragments arranged by size: 1862 1068 1033 664 543 304 100 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 0 300 4611 5220 5766 Size: 300 4311 609 546 Fragments arranged by size: 4311 609 546 300 MfeI C'AATT_G Cuts at: 0 3377 5766 Size: 3377 2389 MscI TGG'CCA Cuts at: 0 4879 5766 Size: 4879 887 MslI CAynn'nnrTG Cuts at: 0 3138 3404 4108 4437 4938 4958 5159 5458 Size: 3138 266 704 329 501 20 201 299 Cuts at: 5458 5766 Size: 308 Fragments arranged by size: 3138 704 501 329 308 299 266 201 20 MspA1I CmG'CkG Cuts at: 0 334 3346 4718 5172 5766 Size: 334 3012 1372 454 594 Fragments arranged by size: 3012 1372 594 454 334 NcoI C'CATG_G Cuts at: 0 91 5420 5766 Size: 91 5329 346 Fragments arranged by size: 5329 346 91 NdeI CA'TA_TG Cuts at: 0 1167 1839 4434 5766 Size: 1167 672 2595 1332 Fragments arranged by size: 2595 1332 1167 672 NsiI A_TGCA'T Cuts at: 0 393 5766 Size: 393 5373 NspI r_CATG'y Cuts at: 0 1069 3976 4221 5068 5766 Size: 1069 2907 245 847 698 Fragments arranged by size: 2907 1069 847 698 245 PfoI T'CCnGG_A Cuts at: 0 2208 3879 4325 5766 Size: 2208 1671 446 1441 Fragments arranged by size: 2208 1671 1441 446 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 184 216 3408 3440 5766 Size: 184 32 3192 32 2326 Fragments arranged by size: 3192 2326 184 32 32 PpuMI rG'GwC_Cy Cuts at: 0 73 940 5190 5766 Size: 73 867 4250 576 Fragments arranged by size: 4250 867 576 73 PsiI TTA'TAA Cuts at: 0 2915 5766 Size: 2915 2851 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 917 949 5766 Size: 917 32 4817 Fragments arranged by size: 4817 917 32 PstI C_TGCA'G Cuts at: 0 44 3083 3201 3460 5709 5766 Size: 44 3039 118 259 2249 57 Fragments arranged by size: 3039 2249 259 118 57 44 PvuII CAG'CTG Cuts at: 0 334 3346 4718 5766 Size: 334 3012 1372 1048 Fragments arranged by size: 3012 1372 1048 334 SacI G_AGCT'C Cuts at: 0 5294 5766 Size: 5294 472 SacII CC_GC'GG Cuts at: 0 5173 5766 Size: 5173 593 SanDI GG'GwC_CC Cuts at: 0 940 5766 Size: 940 4826 SapI GCTCTTCn'nnn_ Cuts at: 0 1073 1647 4896 5299 5712 5766 Size: 1073 574 3249 403 413 54 Fragments arranged by size: 3249 1073 574 413 403 54 ScaI AGT'ACT Cuts at: 0 224 5269 5766 Size: 224 5045 497 Fragments arranged by size: 5045 497 224 SexAI A'CCwGG_T Cuts at: 0 311 434 716 2217 5766 Size: 311 123 282 1501 3549 Fragments arranged by size: 3549 1501 311 282 123 SfcI C'TryA_G Cuts at: 0 40 985 2606 3079 3197 3456 4506 5022 Size: 40 945 1621 473 118 259 1050 516 Cuts at: 5022 5705 5766 Size: 683 61 Fragments arranged by size: 1621 1050 945 683 516 473 259 118 61 40 SmaI CCC'GGG Cuts at: 0 5186 5766 Size: 5186 580 SmlI C'TyrA_G Cuts at: 0 355 688 1755 2527 3811 3858 5329 5766 Size: 355 333 1067 772 1284 47 1471 437 Fragments arranged by size: 1471 1284 1067 772 437 355 333 47 SphI G_CATG'C Cuts at: 0 3976 4221 5766 Size: 3976 245 1545 Fragments arranged by size: 3976 1545 245 SspI AAT'ATT Cuts at: 0 2911 4118 5766 Size: 2911 1207 1648 Fragments arranged by size: 2911 1648 1207 StuI AGG'CCT Cuts at: 0 38 1851 5766 Size: 38 1813 3915 Fragments arranged by size: 3915 1813 38 StyI C'CwwG_G Cuts at: 0 91 3591 4074 5420 5766 Size: 91 3500 483 1346 346 Fragments arranged by size: 3500 1346 483 346 91 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 1680 5766 Size: 1680 4086 TatI w'GTAC_w Cuts at: 0 222 861 2453 2731 2849 2924 3703 5267 Size: 222 639 1592 278 118 75 779 1564 Cuts at: 5267 5498 5766 Size: 231 268 Fragments arranged by size: 1592 1564 779 639 278 268 231 222 118 75 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 3752 3784 4510 4542 5766 Size: 3752 32 726 32 1224 Fragments arranged by size: 3752 1224 726 32 32 Tth111I GACn'n_nGTC Cuts at: 0 3906 5766 Size: 3906 1860 XbaI T'CTAG_A Cuts at: 0 3426 5766 Size: 3426 2340 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 3137 4104 5766 Size: 3137 967 1662 Fragments arranged by size: 3137 1662 967 XmaI C'CCGG_G Cuts at: 0 5184 5766 Size: 5184 582 XmnI GAAnn'nnTTC Cuts at: 0 107 345 665 5355 5766 Size: 107 238 320 4690 411 Fragments arranged by size: 4690 411 320 238 107 Enzymes that do cut: AarI AccI AclI AcuI AfeI AflII AhdI AlfI AlwNI ApoI AseI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BfrBI BglII BlpI Bme1580I BmrI BplI BpmI Bpu10I BpuEI BsaI BsaBI BsaXI BseRI BseYI BsgI BsiHKAI BsmI Bsp1286I BspHI BspMI BsrBI BsrDI BsrGI BssSI BstBI BstEII BstXI BstYI BstZ17I Bsu36I BtgI BtgZI BtsI ClaI DraI DraIII DrdI EaeI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI FspAI HaeII Hin4I HincII MfeI MscI MslI MspA1I NcoI NdeI NsiI NspI PfoI PpiI PpuMI PsiI PsrI PstI PvuII SacI SacII SanDI SapI ScaI SexAI SfcI SmaI SmlI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI Enzymes that do not cut: AatII Acc65I AflIII AgeI AleI AloI ApaI ApaLI AscI AsiSI AvrII BaeI BbeI BglI BmgBI BmtI BsaAI BsaHI BsaWI BsiEI BsiWI BsmBI BspEI BsrFI BssHII BstAPI CspCI EagI FseI HindIII HpaI KasI KpnI MluI MmeI NaeI NarI NgoMIV NheI NotI NruI PacI PasI PciI PflMI PmeI PmlI PshAI PspOMI PspXI PvuI RsrII SalI SbfI SfiI SfoI SgfI SgrAI SnaBI SpeI SrfI SwaI XhoI ZraI