FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9759, 714 aa 1>>>pF1KB9759 714 - 714 aa - 714 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.6357+/-0.00104; mu= -10.8402+/- 0.062 mean_var=523.8444+/-111.241, 0's: 0 Z-trim(117.8): 820 B-trim: 174 in 1/53 Lambda= 0.056037 statistics sampled from 17708 (18618) to 17708 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.572), width: 16 Scan time: 3.980 The best scores are: opt bits E(32554) CCDS42230.1 HIC1 gene_id:3090|Hs108|chr17 ( 714) 4995 418.6 1.6e-116 CCDS42229.1 HIC1 gene_id:3090|Hs108|chr17 ( 733) 4995 418.6 1.7e-116 CCDS13789.1 HIC2 gene_id:23119|Hs108|chr22 ( 615) 1566 141.3 4.2e-33 >>CCDS42230.1 HIC1 gene_id:3090|Hs108|chr17 (714 aa) initn: 4995 init1: 4995 opt: 4995 Z-score: 2205.2 bits: 418.6 E(32554): 1.6e-116 Smith-Waterman score: 4995; 100.0% identity (100.0% similar) in 714 aa overlap (1-714:1-714) 10 20 30 40 50 60 pF1KB9 MLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 NLLNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAPGAEPSLGAVLAAASYLQIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 NLLNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAPGAEPSLGAVLAAASYLQIP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 DLVALCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRAATPVIQACYPSPVGPPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 DLVALCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRAATPVIQACYPSPVGPPPPP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AAEPPSGPEAAVNTHCAELYASGPGPAAALCASERRCSPLCGLDLSKKSPPGSAAPERPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 AAEPPSGPEAAVNTHCAELYASGPGPAAALCASERRCSPLCGLDLSKKSPPGSAAPERPL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 AERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEEAAPPSDPFRGGSGSPGPEPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 AERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEEAAPPSDPFRGGSGSPGPEPP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 GRPDGPSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERGGDAAVSPGGPPLGLAPPPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GRPDGPSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERGGDAAVSPGGPPLGLAPPPR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 YPGSLDGPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYPCPHLAYGEPESFGDNLYVC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 YPGSLDGPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYPCPHLAYGEPESFGDNLYVC 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 IPCGKGFPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAAGLGPPFGGGGDKVAGAPGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 IPCGKGFPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAAGLGPPFGGGGDKVAGAPGG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 LGELLRPYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTICGKKFTQRGTMTRHMRSHLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LGELLRPYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTICGKKFTQRGTMTRHMRSHLG 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 LKPFACDACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKFAQQRNLISHMKMHAVGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LKPFACDACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKFAQQRNLISHMKMHAVGGAA 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 GAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQLSLKQQDKAAAAELLAQTTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQLSLKQQDKAAAAELLAQTTH 610 620 630 640 650 660 670 680 690 700 710 pF1KB9 FLHDPKVALESLYPLAKFTAELGLSPDKAAEVLSQGAHLAAGPDGRTIDRFSPT :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 FLHDPKVALESLYPLAKFTAELGLSPDKAAEVLSQGAHLAAGPDGRTIDRFSPT 670 680 690 700 710 >>CCDS42229.1 HIC1 gene_id:3090|Hs108|chr17 (733 aa) initn: 4995 init1: 4995 opt: 4995 Z-score: 2205.1 bits: 418.6 E(32554): 1.7e-116 Smith-Waterman score: 4995; 100.0% identity (100.0% similar) in 714 aa overlap (1-714:20-733) 10 20 30 40 pF1KB9 MLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRA ::::::::::::::::::::::::::::::::::::::::: CCDS42 MTFPEADILLKSGECAGQTMLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB9 HKNVLAASSAYLKSLVVHDNLLNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 HKNVLAASSAYLKSLVVHDNLLNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAP 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB9 GAEPSLGAVLAAASYLQIPDLVALCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GAEPSLGAVLAAASYLQIPDLVALCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRA 130 140 150 160 170 180 170 180 190 200 210 220 pF1KB9 ATPVIQACYPSPVGPPPPPAAEPPSGPEAAVNTHCAELYASGPGPAAALCASERRCSPLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 ATPVIQACYPSPVGPPPPPAAEPPSGPEAAVNTHCAELYASGPGPAAALCASERRCSPLC 190 200 210 220 230 240 230 240 250 260 270 280 pF1KB9 GLDLSKKSPPGSAAPERPLAERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GLDLSKKSPPGSAAPERPLAERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEEA 250 260 270 280 290 300 290 300 310 320 330 340 pF1KB9 APPSDPFRGGSGSPGPEPPGRPDGPSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 APPSDPFRGGSGSPGPEPPGRPDGPSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERG 310 320 330 340 350 360 350 360 370 380 390 400 pF1KB9 GDAAVSPGGPPLGLAPPPRYPGSLDGPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GDAAVSPGGPPLGLAPPPRYPGSLDGPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYP 370 380 390 400 410 420 410 420 430 440 450 460 pF1KB9 CPHLAYGEPESFGDNLYVCIPCGKGFPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 CPHLAYGEPESFGDNLYVCIPCGKGFPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAA 430 440 450 460 470 480 470 480 490 500 510 520 pF1KB9 GLGPPFGGGGDKVAGAPGGLGELLRPYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GLGPPFGGGGDKVAGAPGGLGELLRPYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTIC 490 500 510 520 530 540 530 540 550 560 570 580 pF1KB9 GKKFTQRGTMTRHMRSHLGLKPFACDACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GKKFTQRGTMTRHMRSHLGLKPFACDACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKF 550 560 570 580 590 600 590 600 610 620 630 640 pF1KB9 AQQRNLISHMKMHAVGGAAGAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 AQQRNLISHMKMHAVGGAAGAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQL 610 620 630 640 650 660 650 660 670 680 690 700 pF1KB9 SLKQQDKAAAAELLAQTTHFLHDPKVALESLYPLAKFTAELGLSPDKAAEVLSQGAHLAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SLKQQDKAAAAELLAQTTHFLHDPKVALESLYPLAKFTAELGLSPDKAAEVLSQGAHLAA 670 680 690 700 710 720 710 pF1KB9 GPDGRTIDRFSPT ::::::::::::: CCDS42 GPDGRTIDRFSPT 730 >>CCDS13789.1 HIC2 gene_id:23119|Hs108|chr22 (615 aa) initn: 1386 init1: 741 opt: 1566 Z-score: 707.9 bits: 141.3 E(32554): 4.2e-33 Smith-Waterman score: 1629; 47.8% identity (64.8% similar) in 630 aa overlap (1-594:19-611) 10 20 30 40 pF1KB9 MLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAH : :: :.::.:::::::.::::::::::::.:.:..:::: CCDS13 MVSGPLALRWCAWAGRGDMGPDMELPSHSKQLLLQLNQQRTKGFLCDVIIMVENSIFRAH 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB9 KNVLAASSAYLKSLVVHDNLLNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAPG :::::::: :.::::.::::.::: :::: .::. .:::::::.: . . : CCDS13 KNVLAASSIYFKSLVLHDNLINLDTDMVSSTVFQQILDFIYTGKLLPSDQ--------P- 70 80 90 100 110 110 120 130 140 150 160 pF1KB9 AEPSLGAVLAAASYLQIPDLVALCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRAA :::.....:.::::::.:.:.:::...::: :: :.: .: . .::: :. : . CCDS13 AEPNFSTLLTAASYLQLPELAALCRRKLKRAGKPF-----GSGRAGSTGMGRPPRSQRLS 120 130 140 150 160 170 180 190 200 pF1KB9 TP-VIQACYPSPV----GPPPPPAAEPPSGPEAAV-----NTHCAELYASGPGPA---AA : :::: : . : : : .: . . : .. . . :: :. CCDS13 TASVIQARYQGLVDGRKGAHAPQELPQAKGSDDELFLGGSNQDSVQGLGRAVCPAGGEAG 170 180 190 200 210 220 210 220 230 240 250 pF1KB9 L--CASERR-----CSPLCGLDLSKKSPPGSAAPERP---------LAEREL--PPRPDS : :.: : :::::::::: : : :.. . :: .. CCDS13 LGGCSSSTNGSSGGCEQELGLDLSKKSPPLPPATPGPHLTPDDAAQLSDSQHGSPPAASA 230 240 250 260 270 280 260 270 280 290 300 310 pF1KB9 PPSAGPAAYKEPPLALPSLPPLPFQKLEEAAPPSDPFRGGSGSPGPEPPGRPDGPSLLYR :: :. :.:.: : . : :.. :: : : . .:: .: . . CCDS13 PPVANSASYSE----LGGTPDEPMD-LEGAE---DNHLSLLEAPGGQPRKSLRHSTRKKE 290 300 310 320 330 320 330 340 350 360 pF1KB9 WMKHEPGLGSYGD--ELGRERGSPSERCE---ERGGDAAVSPGGPPLGLAPPPRYPGSLD : :.:: :: . : : . :.:. : .: .. .. :. : : : :: . . CCDS13 WGKKEPVAGSPFERREAGPKGPCPGEEGEGVGDRVPNGILASGAGPSGPYGEPPYPCKEE 340 350 360 370 380 390 370 380 390 400 410 420 pF1KB9 GPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYPCPHLAYGEPESFGDNLYVCIPCGKG .. ..: .:. : ::.. . . ::: : :.::::::::::.:: CCDS13 EENGKDASEDSAQSGSEGGSGHASAHYMYRQEGY--------ETVSYGDNLYVCIPCAKG 400 410 420 430 440 450 430 440 450 460 470 480 pF1KB9 FPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAAGLGPPFGGGGDKVAGAPGGLGELLR ::::::::::::.:.::: :. . :.: .: : . : : . . .: : CCDS13 FPSSEQLNAHVETHTEEE--LFIKEEGAY----ETGSGGAEEEAEDLSAPSAAYTAEP-R 460 470 480 490 500 490 500 510 520 530 540 pF1KB9 PYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTICGKKFTQRGTMTRHMRSHLGLKPFAC :..:. :.:.:::::::::::::::::::.::.:::: :::::::::::::::::::::: CCDS13 PFKCSVCEKTYKDPATLRQHEKTHWLTRPFPCNICGKMFTQRGTMTRHMRSHLGLKPFAC 510 520 530 540 550 560 550 560 570 580 590 600 pF1KB9 DACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKFAQQRNLISHMKMHAVGGAAGAAGAL : ::::::::::::::::.::::::::::.:::::.::::::::..:: CCDS13 DECGMRFTRQYRLTEHMRVHSGEKPYECQLCGGKFTQQRNLISHLRMHTSPS 570 580 590 600 610 610 620 630 640 650 660 pF1KB9 AGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQLSLKQQDKAAAAELLAQTTHFLHDPK 714 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:45:08 2016 done: Sun Nov 6 20:45:09 2016 Total Scan time: 3.980 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]