FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5739, 789 aa 1>>>pF1KB5739 789 - 789 aa - 789 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8941+/-0.00112; mu= 17.1204+/- 0.067 mean_var=69.8861+/-14.203, 0's: 0 Z-trim(102.5): 31 B-trim: 0 in 0/50 Lambda= 0.153419 statistics sampled from 6965 (6969) to 6965 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.563), E-opt: 0.2 (0.214), width: 16 Scan time: 3.520 The best scores are: opt bits E(32554) CCDS46591.1 TRPC4AP gene_id:26133|Hs108|chr20 ( 789) 5141 1147.7 0 CCDS13246.1 TRPC4AP gene_id:26133|Hs108|chr20 ( 797) 5115 1142.0 0 >>CCDS46591.1 TRPC4AP gene_id:26133|Hs108|chr20 (789 aa) initn: 5141 init1: 5141 opt: 5141 Z-score: 6144.2 bits: 1147.7 E(32554): 0 Smith-Waterman score: 5141; 100.0% identity (100.0% similar) in 789 aa overlap (1-789:1-789) 10 20 30 40 50 60 pF1KB5 MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTET 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 FLTERDKQSKWSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 FLTERDKQSKWSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 QETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 TKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 QLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVER 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQGASEENGLPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 LCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQGASEENGLPH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 TSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLI 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 WRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 WRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAIS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB5 LKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 LKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB5 YADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 YADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDA 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB5 KFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSF 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB5 LFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 LFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNN 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB5 FHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 FHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYM 730 740 750 760 770 780 pF1KB5 DIDRDFTEE ::::::::: CCDS46 DIDRDFTEE >>CCDS13246.1 TRPC4AP gene_id:26133|Hs108|chr20 (797 aa) initn: 2890 init1: 2890 opt: 5115 Z-score: 6113.0 bits: 1142.0 E(32554): 0 Smith-Waterman score: 5115; 99.0% identity (99.0% similar) in 797 aa overlap (1-789:1-797) 10 20 30 40 50 60 pF1KB5 MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTET 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 FLTERDKQSKWSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 FLTERDKQSKWSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 QETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 QETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 TKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 TKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 QLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 QLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVER 250 260 270 280 290 300 310 320 330 340 350 pF1KB5 LCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQ--------GA :::::::::::::::::::::::::::::::::::::::::::::::::: :: CCDS13 LCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQASIVFPPPGA 310 320 330 340 350 360 360 370 380 390 400 410 pF1KB5 SEENGLPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 SEENGLPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGL 370 380 390 400 410 420 420 430 440 450 460 470 pF1KB5 NNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 NNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQE 430 440 450 460 470 480 480 490 500 510 520 530 pF1KB5 LNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVE 490 500 510 520 530 540 540 550 560 570 580 590 pF1KB5 SFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 SFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRF 550 560 570 580 590 600 600 610 620 630 640 650 pF1KB5 NKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 NKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYIS 610 620 630 640 650 660 660 670 680 690 700 710 pF1KB5 QVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 QVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKK 670 680 690 700 710 720 720 730 740 750 760 770 pF1KB5 YPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 YPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALV 730 740 750 760 770 780 780 pF1KB5 SYIEEPYMDIDRDFTEE ::::::::::::::::: CCDS13 SYIEEPYMDIDRDFTEE 790 789 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:05:49 2016 done: Sun Nov 6 21:05:49 2016 Total Scan time: 3.520 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]