FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1876, 398 aa 1>>>pF1KE1876 398 - 398 aa - 398 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2729+/-0.000396; mu= 17.7158+/- 0.025 mean_var=73.5446+/-14.937, 0's: 0 Z-trim(112.3): 19 B-trim: 657 in 1/52 Lambda= 0.149554 statistics sampled from 21095 (21114) to 21095 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.248), width: 16 Scan time: 7.500 The best scores are: opt bits E(85289) NP_001186778 (OMIM: 602074) 28S ribosomal protein ( 398) 2691 590.1 3.1e-168 NP_387506 (OMIM: 602074) 28S ribosomal protein S29 ( 398) 2691 590.1 3.1e-168 NP_004623 (OMIM: 602074) 28S ribosomal protein S29 ( 398) 2691 590.1 3.1e-168 XP_016857782 (OMIM: 602074) PREDICTED: 28S ribosom ( 357) 2328 511.7 1.1e-144 NP_001186780 (OMIM: 602074) 28S ribosomal protein ( 357) 2328 511.7 1.1e-144 XP_016857781 (OMIM: 602074) PREDICTED: 28S ribosom ( 357) 2328 511.7 1.1e-144 XP_005245538 (OMIM: 602074) PREDICTED: 28S ribosom ( 357) 2328 511.7 1.1e-144 NP_001186779 (OMIM: 602074) 28S ribosomal protein ( 364) 2081 458.5 1.2e-128 XP_005245537 (OMIM: 602074) PREDICTED: 28S ribosom ( 364) 2081 458.5 1.2e-128 XP_016857780 (OMIM: 602074) PREDICTED: 28S ribosom ( 364) 2081 458.5 1.2e-128 XP_016857786 (OMIM: 602074) PREDICTED: 28S ribosom ( 323) 2075 457.1 2.7e-128 XP_005245539 (OMIM: 602074) PREDICTED: 28S ribosom ( 323) 2075 457.1 2.7e-128 XP_011508274 (OMIM: 602074) PREDICTED: 28S ribosom ( 371) 1386 308.5 1.7e-83 XP_016857779 (OMIM: 602074) PREDICTED: 28S ribosom ( 371) 1386 308.5 1.7e-83 XP_016857778 (OMIM: 602074) PREDICTED: 28S ribosom ( 371) 1386 308.5 1.7e-83 XP_016857785 (OMIM: 602074) PREDICTED: 28S ribosom ( 330) 1153 258.2 2.1e-68 XP_016857784 (OMIM: 602074) PREDICTED: 28S ribosom ( 330) 1153 258.2 2.1e-68 XP_016857783 (OMIM: 602074) PREDICTED: 28S ribosom ( 337) 1153 258.2 2.1e-68 >>NP_001186778 (OMIM: 602074) 28S ribosomal protein S29, (398 aa) initn: 2691 init1: 2691 opt: 2691 Z-score: 3141.3 bits: 590.1 E(85289): 3.1e-168 Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398) 10 20 30 40 50 60 pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY 310 320 330 340 350 360 370 380 390 pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL :::::::::::::::::::::::::::::::::::::: NP_001 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL 370 380 390 >>NP_387506 (OMIM: 602074) 28S ribosomal protein S29, mi (398 aa) initn: 2691 init1: 2691 opt: 2691 Z-score: 3141.3 bits: 590.1 E(85289): 3.1e-168 Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398) 10 20 30 40 50 60 pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_387 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_387 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_387 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_387 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_387 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_387 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY 310 320 330 340 350 360 370 380 390 pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL :::::::::::::::::::::::::::::::::::::: NP_387 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL 370 380 390 >>NP_004623 (OMIM: 602074) 28S ribosomal protein S29, mi (398 aa) initn: 2691 init1: 2691 opt: 2691 Z-score: 3141.3 bits: 590.1 E(85289): 3.1e-168 Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398) 10 20 30 40 50 60 pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY 310 320 330 340 350 360 370 380 390 pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL :::::::::::::::::::::::::::::::::::::: NP_004 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL 370 380 390 >>XP_016857782 (OMIM: 602074) PREDICTED: 28S ribosomal p (357 aa) initn: 2400 init1: 2321 opt: 2328 Z-score: 2718.7 bits: 511.7 E(85289): 1.1e-144 Smith-Waterman score: 2328; 98.0% identity (98.6% similar) in 353 aa overlap (46-398:8-357) 20 30 40 50 60 70 pF1KE1 LDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDL : ::: .. ::::::::::::::::::: XP_016 MMLKGITRLISRIHK---AKHGDQHEGQHYNISPQDL 10 20 30 80 90 100 110 120 130 pF1KE1 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE1 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE1 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM 160 170 180 190 200 210 260 270 280 290 300 310 pF1KE1 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS 220 230 240 250 260 270 320 330 340 350 360 370 pF1KE1 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE 280 290 300 310 320 330 380 390 pF1KE1 GKKELLFLSNANPSLLERHCAYL ::::::::::::::::::::::: XP_016 GKKELLFLSNANPSLLERHCAYL 340 350 >>NP_001186780 (OMIM: 602074) 28S ribosomal protein S29, (357 aa) initn: 2400 init1: 2321 opt: 2328 Z-score: 2718.7 bits: 511.7 E(85289): 1.1e-144 Smith-Waterman score: 2328; 98.0% identity (98.6% similar) in 353 aa overlap (46-398:8-357) 20 30 40 50 60 70 pF1KE1 LDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDL : ::: .. ::::::::::::::::::: NP_001 MMLKGITRLISRIHK---AKHGDQHEGQHYNISPQDL 10 20 30 80 90 100 110 120 130 pF1KE1 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE1 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE1 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM 160 170 180 190 200 210 260 270 280 290 300 310 pF1KE1 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS 220 230 240 250 260 270 320 330 340 350 360 370 pF1KE1 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE 280 290 300 310 320 330 380 390 pF1KE1 GKKELLFLSNANPSLLERHCAYL ::::::::::::::::::::::: NP_001 GKKELLFLSNANPSLLERHCAYL 340 350 >>XP_016857781 (OMIM: 602074) PREDICTED: 28S ribosomal p (357 aa) initn: 2400 init1: 2321 opt: 2328 Z-score: 2718.7 bits: 511.7 E(85289): 1.1e-144 Smith-Waterman score: 2328; 98.0% identity (98.6% similar) in 353 aa overlap (46-398:8-357) 20 30 40 50 60 70 pF1KE1 LDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDL : ::: .. ::::::::::::::::::: XP_016 MMLKGITRLISRIHK---AKHGDQHEGQHYNISPQDL 10 20 30 80 90 100 110 120 130 pF1KE1 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE1 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE1 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM 160 170 180 190 200 210 260 270 280 290 300 310 pF1KE1 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS 220 230 240 250 260 270 320 330 340 350 360 370 pF1KE1 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE 280 290 300 310 320 330 380 390 pF1KE1 GKKELLFLSNANPSLLERHCAYL ::::::::::::::::::::::: XP_016 GKKELLFLSNANPSLLERHCAYL 340 350 >>XP_005245538 (OMIM: 602074) PREDICTED: 28S ribosomal p (357 aa) initn: 2400 init1: 2321 opt: 2328 Z-score: 2718.7 bits: 511.7 E(85289): 1.1e-144 Smith-Waterman score: 2328; 98.0% identity (98.6% similar) in 353 aa overlap (46-398:8-357) 20 30 40 50 60 70 pF1KE1 LDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDL : ::: .. ::::::::::::::::::: XP_005 MMLKGITRLISRIHK---AKHGDQHEGQHYNISPQDL 10 20 30 80 90 100 110 120 130 pF1KE1 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE1 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE1 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM 160 170 180 190 200 210 260 270 280 290 300 310 pF1KE1 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS 220 230 240 250 260 270 320 330 340 350 360 370 pF1KE1 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE 280 290 300 310 320 330 380 390 pF1KE1 GKKELLFLSNANPSLLERHCAYL ::::::::::::::::::::::: XP_005 GKKELLFLSNANPSLLERHCAYL 340 350 >>NP_001186779 (OMIM: 602074) 28S ribosomal protein S29, (364 aa) initn: 2093 init1: 2070 opt: 2081 Z-score: 2430.6 bits: 458.5 E(85289): 1.2e-128 Smith-Waterman score: 2362; 91.5% identity (91.5% similar) in 398 aa overlap (1-398:1-364) 10 20 30 40 50 60 pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDP---- 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP :::::::::::::::::::::::::::::: NP_001 ------------------------------VKTFSEACLMVRKPALELLHYLKNTSFAYP 60 70 80 130 140 150 160 170 180 pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY 270 280 290 300 310 320 370 380 390 pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL :::::::::::::::::::::::::::::::::::::: NP_001 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL 330 340 350 360 >>XP_005245537 (OMIM: 602074) PREDICTED: 28S ribosomal p (364 aa) initn: 2093 init1: 2070 opt: 2081 Z-score: 2430.6 bits: 458.5 E(85289): 1.2e-128 Smith-Waterman score: 2362; 91.5% identity (91.5% similar) in 398 aa overlap (1-398:1-364) 10 20 30 40 50 60 pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDP---- 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP :::::::::::::::::::::::::::::: XP_005 ------------------------------VKTFSEACLMVRKPALELLHYLKNTSFAYP 60 70 80 130 140 150 160 170 180 pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY 270 280 290 300 310 320 370 380 390 pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL :::::::::::::::::::::::::::::::::::::: XP_005 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL 330 340 350 360 >>XP_016857780 (OMIM: 602074) PREDICTED: 28S ribosomal p (364 aa) initn: 2093 init1: 2070 opt: 2081 Z-score: 2430.6 bits: 458.5 E(85289): 1.2e-128 Smith-Waterman score: 2362; 91.5% identity (91.5% similar) in 398 aa overlap (1-398:1-364) 10 20 30 40 50 60 pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDP---- 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP :::::::::::::::::::::::::::::: XP_016 ------------------------------VKTFSEACLMVRKPALELLHYLKNTSFAYP 60 70 80 130 140 150 160 170 180 pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY 270 280 290 300 310 320 370 380 390 pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL :::::::::::::::::::::::::::::::::::::: XP_016 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL 330 340 350 360 398 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:08:24 2016 done: Sun Nov 6 21:08:25 2016 Total Scan time: 7.500 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]