Result of FASTA (omim) for
pFN21AB6759
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6759, 109 aa
1>>>pF1KB6759 109 - 109 aa - 109 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4882+/-0.000275; mu= 14.0938+/- 0.017
mean_var=52.9941+/-10.502, 0's: 0 Z-trim(118.7): 71 B-trim: 314 in 1/53
Lambda= 0.176182
statistics sampled from 31752 (31824) to 31752 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.373), width: 16
Scan time: 4.140
The best scores are: opt bits E(85289)
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 669 176.9 5.2e-45
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 482 129.3 1.1e-30
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 456 122.7 1e-28
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 443 119.4 1e-27
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 431 116.4 8.5e-27
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 248 69.8 8.2e-13
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 248 69.8 8.2e-13
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 245 69.1 1.4e-12
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 240 67.8 3.3e-12
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 223 63.6 8.1e-11
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 223 63.6 8.1e-11
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 223 63.6 8.1e-11
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 220 62.7 1.1e-10
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 217 62.0 1.9e-10
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 216 61.7 2.3e-10
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 206 59.2 1.5e-09
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 197 56.9 6.2e-09
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 195 56.5 1.1e-08
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 195 56.5 1.1e-08
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 190 55.1 2.3e-08
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 184 53.6 6.4e-08
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 184 53.6 6.4e-08
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 183 53.4 1e-07
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 183 53.5 1.1e-07
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 181 52.8 1.1e-07
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 181 52.8 1.1e-07
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 181 53.0 1.6e-07
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 176 51.5 2.5e-07
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 182 53.5 2.9e-07
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 170 50.1 8.9e-07
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 170 50.1 8.9e-07
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 170 50.1 8.9e-07
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 170 50.1 1e-06
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 166 49.0 1.5e-06
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 167 49.3 1.6e-06
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 166 49.1 1.9e-06
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 166 49.1 1.9e-06
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 164 48.6 2.5e-06
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 151 45.2 2.2e-05
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 149 44.7 3.1e-05
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 141 42.7 0.00013
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 138 41.9 0.00022
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 136 41.4 0.00033
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 132 40.4 0.00066
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- ( 64) 129 39.5 0.00077
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- ( 64) 129 39.5 0.00077
NP_001265665 (OMIM: 187011) C-C motif chemokine 5 ( 154) 132 40.5 0.00091
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- ( 86) 129 39.6 0.00098
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 129 39.6 0.0011
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 127 39.2 0.0017
>>NP_005614 (OMIM: 602283) C-C motif chemokine 8 precurs (99 aa)
initn: 669 init1: 669 opt: 669 Z-score: 929.0 bits: 176.9 E(85289): 5.2e-45
Smith-Waterman score: 669; 100.0% identity (100.0% similar) in 99 aa overlap (11-109:1-99)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
60 70 80 90
>>NP_002973 (OMIM: 158105,182940,607948,609423) C-C moti (99 aa)
initn: 501 init1: 478 opt: 482 Z-score: 672.1 bits: 129.3 E(85289): 1.1e-30
Smith-Waterman score: 482; 69.4% identity (85.7% similar) in 98 aa overlap (11-108:1-98)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
::::::::::::.:::: ::::::::... :.:::.: :::: .::: :
NP_002 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLAS
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: :::. .:::::::::: .::.:::::..::.::: :::. :. :
NP_002 YRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
60 70 80 90
>>NP_002977 (OMIM: 600807,601156,609423) eotaxin precurs (97 aa)
initn: 349 init1: 349 opt: 456 Z-score: 636.5 bits: 122.7 E(85289): 1e-28
Smith-Waterman score: 456; 68.7% identity (86.9% similar) in 99 aa overlap (11-109:1-97)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
:::::::: :::.::.::::::: : .:.: :::::. :::::.:::::
NP_002 MKVSAALLWLLLIAAAFSPQGLAGP--ASVPTTCCFNLANRKIPLQRLES
10 20 30 40
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: :::. .::..::::::: .:..:::::..::.::::.::: . ::
NP_002 YRRITSGKCPQKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
50 60 70 80 90
>>NP_006264 (OMIM: 158106) C-C motif chemokine 7 precurs (99 aa)
initn: 459 init1: 439 opt: 443 Z-score: 618.5 bits: 119.4 E(85289): 1e-27
Smith-Waterman score: 443; 65.3% identity (81.6% similar) in 98 aa overlap (11-108:1-98)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
::.::::::::: ::.::::::::: ... :::. ::.::: :::::
NP_006 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: : :. .::.:::::::: ::.:::: ..::.: :::::. :. :
NP_006 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
60 70 80 90
>>NP_005399 (OMIM: 601391) C-C motif chemokine 13 precur (98 aa)
initn: 429 init1: 245 opt: 431 Z-score: 602.1 bits: 116.4 E(85289): 8.5e-27
Smith-Waterman score: 431; 62.2% identity (88.8% similar) in 98 aa overlap (11-108:1-97)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
:::::.:::::::.:.:.::::::::....: ::::. ..:: .:::.:
NP_005 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKS
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
:. ::. .::..::::.:: :::.::::::.::.. :::: . ..::
NP_005 YV-ITTSRCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
60 70 80 90
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 242 init1: 143 opt: 248 Z-score: 351.1 bits: 69.8 E(85289): 8.2e-13
Smith-Waterman score: 248; 41.8% identity (72.5% similar) in 91 aa overlap (11-101:1-90)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
:.::.: : .:: . .. : :. : ... : .:::. .:.:: . . .
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIAD
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: . :. :: : .::: ::::..:::::.:.::. .. :.
NP_001 YFE-TSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa)
initn: 242 init1: 143 opt: 248 Z-score: 351.1 bits: 69.8 E(85289): 8.2e-13
Smith-Waterman score: 248; 41.8% identity (72.5% similar) in 91 aa overlap (11-101:1-90)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
:.::.: : .:: . .. : :. : ... : .:::. .:.:: . . .
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIAD
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: . :. :: : .::: ::::..:::::.:.::. .. :.
NP_066 YFE-TSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa)
initn: 238 init1: 130 opt: 245 Z-score: 347.0 bits: 69.1 E(85289): 1.4e-12
Smith-Waterman score: 245; 38.5% identity (72.5% similar) in 91 aa overlap (11-101:1-90)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
::. ...: ::...:.: .:. : . . : .:::. ::.: . . .
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVD
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: . ... : . ::.:.:::::.:::::.: ::.. . :.
NP_996 YYETSSL-CSQPAVVFQTKRGKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa)
initn: 254 init1: 122 opt: 240 Z-score: 340.1 bits: 67.8 E(85289): 3.3e-12
Smith-Waterman score: 240; 37.4% identity (72.5% similar) in 91 aa overlap (11-101:1-90)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
::. ...: ::...:.: .:. : . . : .:::. ::.: . . .
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVD
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: . ... : . ::.:.:::.:.:::::.: ::.. . :.
NP_002 YYETSSL-CSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>NP_002982 (OMIM: 602495) C-C motif chemokine 24 precur (119 aa)
initn: 209 init1: 209 opt: 223 Z-score: 315.2 bits: 63.6 E(85289): 8.1e-11
Smith-Waterman score: 223; 37.4% identity (62.6% similar) in 99 aa overlap (11-109:5-98)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
: . ..:: : . : . : : :: :: ::. ....:: .:. :
NP_002 MAGLMTIVTSLLFLGVCAHHIIPTG-----SVVIPSPCCMFFVSKRIPENRVVS
10 20 30 40
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: . : : .::: ::.:.. :.:::..::. ::.:: .. .:
NP_002 YQLSSRSTCLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPV
50 60 70 80 90 100
NP_002 QRYPGNQTTC
110
109 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:09:39 2016 done: Sun Nov 6 21:09:40 2016
Total Scan time: 4.140 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]