FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6759, 109 aa 1>>>pF1KB6759 109 - 109 aa - 109 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6416+/-0.000562; mu= 13.2050+/- 0.034 mean_var=54.8351+/-10.847, 0's: 0 Z-trim(112.0): 50 B-trim: 92 in 1/51 Lambda= 0.173199 statistics sampled from 12755 (12805) to 12755 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.393), width: 16 Scan time: 1.410 The best scores are: opt bits E(32554) CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17 ( 99) 669 174.1 1.4e-44 CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17 ( 99) 482 127.4 1.6e-30 CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 ( 97) 456 120.9 1.4e-28 CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 ( 99) 443 117.6 1.4e-27 CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 ( 98) 431 114.6 1.1e-26 CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 248 68.9 6e-13 CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 ( 92) 240 66.9 2.4e-12 CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7 ( 119) 223 62.7 5.6e-11 CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 220 61.9 7.7e-11 >>CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17 (99 aa) initn: 669 init1: 669 opt: 669 Z-score: 914.1 bits: 174.1 E(32554): 1.4e-44 Smith-Waterman score: 669; 100.0% identity (100.0% similar) in 99 aa overlap (11-109:1-99) 10 20 30 40 50 60 pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES 10 20 30 40 50 70 80 90 100 pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP 60 70 80 90 >>CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17 (99 aa) initn: 501 init1: 478 opt: 482 Z-score: 661.5 bits: 127.4 E(32554): 1.6e-30 Smith-Waterman score: 482; 69.4% identity (85.7% similar) in 98 aa overlap (11-108:1-98) 10 20 30 40 50 60 pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES ::::::::::::.:::: ::::::::... :.:::.: :::: .::: : CCDS11 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLAS 10 20 30 40 50 70 80 90 100 pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP : :::. .:::::::::: .::.:::::..::.::: :::. :. : CCDS11 YRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT 60 70 80 90 >>CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 (97 aa) initn: 349 init1: 349 opt: 456 Z-score: 626.6 bits: 120.9 E(32554): 1.4e-28 Smith-Waterman score: 456; 68.7% identity (86.9% similar) in 99 aa overlap (11-109:1-97) 10 20 30 40 50 60 pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES :::::::: :::.::.::::::: : .:.: :::::. :::::.::::: CCDS11 MKVSAALLWLLLIAAAFSPQGLAGP--ASVPTTCCFNLANRKIPLQRLES 10 20 30 40 70 80 90 100 pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP : :::. .::..::::::: .:..:::::..::.::::.::: . :: CCDS11 YRRITSGKCPQKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP 50 60 70 80 90 >>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 (99 aa) initn: 459 init1: 439 opt: 443 Z-score: 608.9 bits: 117.6 E(32554): 1.4e-27 Smith-Waterman score: 443; 65.3% identity (81.6% similar) in 98 aa overlap (11-108:1-98) 10 20 30 40 50 60 pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES ::.::::::::: ::.::::::::: ... :::. ::.::: ::::: CCDS11 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES 10 20 30 40 50 70 80 90 100 pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP : : :. .::.:::::::: ::.:::: ..::.: :::::. :. : CCDS11 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL 60 70 80 90 >>CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 (98 aa) initn: 429 init1: 245 opt: 431 Z-score: 592.7 bits: 114.6 E(32554): 1.1e-26 Smith-Waterman score: 431; 62.2% identity (88.8% similar) in 98 aa overlap (11-108:1-97) 10 20 30 40 50 60 pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES :::::.:::::::.:.:.::::::::....: ::::. ..:: .:::.: CCDS11 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKS 10 20 30 40 50 70 80 90 100 pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP :. ::. .::..::::.:: :::.::::::.::.. :::: . ..:: CCDS11 YV-ITTSRCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT 60 70 80 90 >>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa) initn: 242 init1: 143 opt: 248 Z-score: 345.9 bits: 68.9 E(32554): 6e-13 Smith-Waterman score: 248; 41.8% identity (72.5% similar) in 91 aa overlap (11-101:1-90) 10 20 30 40 50 60 pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES :.::.: : .:: . .. : :. : ... : .:::. .:.:: . . . CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIAD 10 20 30 40 50 70 80 90 100 pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP : . :. :: : .::: ::::..:::::.:.::. .. :. CCDS32 YFE-TSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA 60 70 80 90 >>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 (92 aa) initn: 254 init1: 122 opt: 240 Z-score: 335.2 bits: 66.9 E(32554): 2.4e-12 Smith-Waterman score: 240; 37.4% identity (72.5% similar) in 91 aa overlap (11-101:1-90) 10 20 30 40 50 60 pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES ::. ...: ::...:.: .:. : . . : .:::. ::.: . . . CCDS11 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVD 10 20 30 40 50 70 80 90 100 pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP : . ... : . ::.:.:::.:.:::::.: ::.. . :. CCDS11 YYETSSL-CSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN 60 70 80 90 >>CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7 (119 aa) initn: 209 init1: 209 opt: 223 Z-score: 310.6 bits: 62.7 E(32554): 5.6e-11 Smith-Waterman score: 223; 37.4% identity (62.6% similar) in 99 aa overlap (11-109:5-98) 10 20 30 40 50 60 pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES : . ..:: : . : . : : :: :: ::. ....:: .:. : CCDS34 MAGLMTIVTSLLFLGVCAHHIIPTG-----SVVIPSPCCMFFVSKRIPENRVVS 10 20 30 40 70 80 90 100 pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP : . : : .::: ::.:.. :.:::..::. ::.:: .. .: CCDS34 YQLSSRSTCLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPV 50 60 70 80 90 100 CCDS34 QRYPGNQTTC 110 >>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa) initn: 210 init1: 144 opt: 220 Z-score: 308.1 bits: 61.9 E(32554): 7.7e-11 Smith-Waterman score: 220; 36.6% identity (68.8% similar) in 93 aa overlap (11-102:1-92) 10 20 30 40 50 pF1KB6 MLKLTPLPSKMKVS-AALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLE ::.: ::. .::.. ... . .. . : :::. . ::: ::. CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIM 10 20 30 40 50 60 70 80 90 100 pF1KB6 SYTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP .: . :: :: : ...: ::::. ::..:...::.: .: . . CCDS32 DYYE-TNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 60 70 80 90 109 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:09:39 2016 done: Sun Nov 6 21:09:39 2016 Total Scan time: 1.410 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]