FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1862, 381 aa 1>>>pF1KE1862 381 - 381 aa - 381 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8526+/-0.000373; mu= 15.0184+/- 0.023 mean_var=98.9718+/-19.417, 0's: 0 Z-trim(115.1): 19 B-trim: 63 in 1/53 Lambda= 0.128919 statistics sampled from 25332 (25351) to 25332 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.297), width: 16 Scan time: 8.850 The best scores are: opt bits E(85289) NP_002843 (OMIM: 602492) pentraxin-related protein ( 381) 2572 488.8 8.7e-138 NP_002514 (OMIM: 600750) neuronal pentraxin-2 prec ( 431) 387 82.5 2.1e-15 NP_002513 (OMIM: 602367) neuronal pentraxin-1 prec ( 432) 361 77.7 5.9e-14 NP_055108 (OMIM: 609474) neuronal pentraxin recept ( 500) 347 75.1 4e-13 NP_001013680 (OMIM: 613442) pentraxin-4 isoform 2 ( 473) 304 67.1 9.8e-11 NP_001315537 (OMIM: 613442) pentraxin-4 isoform 1 ( 478) 304 67.1 9.9e-11 NP_699197 (OMIM: 611691) sushi, von Willebrand fac (3571) 298 66.7 9.8e-10 NP_000558 (OMIM: 123260) C-reactive protein isofor ( 224) 250 56.8 5.9e-08 NP_001315986 (OMIM: 123260) C-reactive protein iso ( 224) 250 56.8 5.9e-08 NP_001630 (OMIM: 104770) serum amyloid P-component ( 223) 225 52.1 1.5e-06 >>NP_002843 (OMIM: 602492) pentraxin-related protein PTX (381 aa) initn: 2572 init1: 2572 opt: 2572 Z-score: 2594.7 bits: 488.8 E(85289): 8.7e-138 Smith-Waterman score: 2572; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381) 10 20 30 40 50 60 pF1KE1 MHLLAILFCALWSAVLAENSDDYDLMYVNLDNEIDNGLHPTEDPTPCACGQEHSEWDKLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MHLLAILFCALWSAVLAENSDDYDLMYVNLDNEIDNGLHPTEDPTPCACGQEHSEWDKLF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 IMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQGWAARSWLPAGCE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 LQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQGWAARSWLPAGCE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 TAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 SYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 IVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 IVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIR 310 320 330 340 350 360 370 380 pF1KE1 GNIVGWGVTEIQPHGGAQYVS ::::::::::::::::::::: NP_002 GNIVGWGVTEIQPHGGAQYVS 370 380 >>NP_002514 (OMIM: 600750) neuronal pentraxin-2 precurso (431 aa) initn: 326 init1: 151 opt: 387 Z-score: 397.7 bits: 82.5 E(85289): 2.1e-15 Smith-Waterman score: 387; 29.7% identity (60.7% similar) in 300 aa overlap (85-377:131-416) 60 70 80 90 100 110 pF1KE1 EWDKLFIMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESL-ARPCAPGAPAEAR- :: :...: : ..: : : :.. : NP_002 KARGAGATGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFRE 110 120 130 140 150 160 120 130 140 150 160 pF1KE1 -LTSALDELLQATRDAGRRLARMEGAEAQRPEEAG---RALAAVLEELRQTRADLHAVQG : . : :: :. :..:..: .. .:.. . ..:. : : ..:. .: NP_002 VLQQRLGEL---ERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELE--RG 170 180 190 200 210 170 180 190 200 210 220 pF1KE1 WAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYG .: . : . .... :.:.. ..:... . : .: .:. :.:.... . :::. NP_002 NSAFK-SPDAFKVSL--PLRTNYLYGKIKKTLP-ELYAFTICLWLRSSASPGIGTPFSYA 220 230 240 250 260 270 230 240 250 260 270 280 pF1KE1 TKRNPYEIQLY-LSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNG . . :: : . . : .... . .: .:: :.: :.: ::....:. . .: NP_002 VPGQANEIVLIEWGNNPIELLINDKVAQL--PLFVSDGKWHHICVTWTTRDGMWEAFQDG 280 290 300 310 320 290 300 310 320 330 340 pF1KE1 ELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEE : .: ..: : . ::.: .:::.. ::: :: : :: :.:. ::::: :: .: NP_002 EKLGTGENLAPWHPIKPGGVLILGQEQD--TVGGRFDATQAFVGELSQFNIWDRVLRAQE 330 340 350 360 370 380 350 360 370 380 pF1KE1 IRETGGAESCHIRGNIVGWGVTEIQPHGGAQYVS : . .. : .. :::. : .... ::: NP_002 IVNIANC-STNMPGNIIPWVDNNVDVFGGASKWPVETCEERLLDL 390 400 410 420 430 >>NP_002513 (OMIM: 602367) neuronal pentraxin-1 precurso (432 aa) initn: 222 init1: 172 opt: 361 Z-score: 371.5 bits: 77.7 E(85289): 5.9e-14 Smith-Waterman score: 376; 27.6% identity (61.0% similar) in 272 aa overlap (114-377:159-420) 90 100 110 120 130 pF1KE1 ELQRLREELGRLAESLARPCAPGAPAEARLTSALDELLQATRDAGRR--LARM----EGA :..: .:::. : .: :.:. :: NP_002 TLSQLGQTLQSLKTRLENLEQYSRLNSSSQTNSLKDLLQSKIDELERQVLSRVNTLEEGK 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE1 EAQRPEEAGRA-LAAVLEELRQTRADLHAVQGWAARSWLPAGCETAILFPMRSKKIFGSV . : . :. . ..: :.: ..:. : .. : : . . ::.:.. ....: NP_002 GGPRNDTEERVKIETALTSLHQRISELEKGQ----KDNRP-GDKFQLTFPLRTNYMYAKV 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE1 HPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLY-LSYQSIVFVVGGEENK . : .. .:..:.:.:.. . . :::.. . :. : . . . .... . : NP_002 KKSLP-EMYAFTVCMWLKSSATPGVGTPFSYAVPGQANELVLIEWGNNPMEILINDKVAK 250 260 270 280 290 300 260 270 280 290 300 310 pF1KE1 LVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKN : ... :.: :.: ::....:. . .: ... ..: : . :.: .:::.. NP_002 L--PFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQD 310 320 330 340 350 360 320 330 340 350 360 370 pF1KE1 GCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIRGNIVGWGVTEIQPHG .::::: : :: :.:. ::::: :. :. . . . . ::...:. ..:. .: NP_002 --TLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIEIYG 370 380 390 400 410 380 pF1KE1 GAQYVS :: NP_002 GATKWTFEACRQIN 420 430 >>NP_055108 (OMIM: 609474) neuronal pentraxin receptor [ (500 aa) initn: 198 init1: 97 opt: 347 Z-score: 356.6 bits: 75.1 E(85289): 4e-13 Smith-Waterman score: 356; 28.3% identity (58.3% similar) in 321 aa overlap (72-377:189-486) 50 60 70 80 90 pF1KE1 EDPTPCACGQEHSEWDKLFIMLENSQMRERMLLQATDDV--LRGELQRLREELGRLAESL ..:. : : :: ...::..:: .. NP_055 GRCESGLPRGLQGAGPRRDTMADGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLS 160 170 180 190 200 210 100 110 120 130 140 150 pF1KE1 ARPCAPGAPAEARLTSALDELLQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQ- : : :: . . . : : .:.: :. ::.. . : .: ::. .. :: NP_055 AAP-APVSAVPTGLHSKMDQL------EGQLLAQVLALEKERV-----ALSHSSRRQRQE 220 230 240 250 260 160 170 180 190 200 210 pF1KE1 TRADLHAVQGWAAR------SWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIW .. .: ..:: .:. .. : : .:.:.. ... :. . : .: .:.::.: NP_055 VEKELDVLQGRVAELEHGSSAYSPPDA-FKISIPIRNNYMYARVRKALP-ELYAFTACMW 270 280 290 300 310 320 220 230 240 250 260 pF1KE1 VKA-TDVLNKTILFSYGTKRNPYEIQLYLS-YQSIVFVVGGEENKLVAEAMVSL--GRWT ... .. .. :::.. . :: : . .. . ... : ::. .:: . : NP_055 LRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPMELLI----NDKVAQLPLSLKDNGWH 330 340 350 360 370 380 270 280 290 300 310 320 pF1KE1 HLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLA :.: .:....:: : . .::: .. ..:. : . ::: .:::.. .:: :: : : NP_055 HICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQD--TLGGRFDATQA 390 400 410 420 430 330 340 350 360 370 380 pF1KE1 FSGRLTGFNIWDSVLSNEEIRETGGAESCH--IRGNIVGWGVTEIQPHGGAQYVS : : .. ::.:: .:. .. : .: . ::.. : .. ::: NP_055 FVGDIAQFNLWDHALTPAQVL---GIANCTAPLLGNVLPWEDKLVEAFGGATKAAFDVCK 440 450 460 470 480 490 NP_055 GRAKA 500 >>NP_001013680 (OMIM: 613442) pentraxin-4 isoform 2 [Hom (473 aa) initn: 286 init1: 154 opt: 304 Z-score: 313.7 bits: 67.1 E(85289): 9.8e-11 Smith-Waterman score: 330; 31.3% identity (53.3% similar) in 319 aa overlap (64-348:126-434) 40 50 60 70 80 pF1KE1 IDNGLHPTEDPTPCACGQEHSEWDKLFIMLENSQMR--ERMLLQATDDVLRGELQRLR-- : ::.: :: .: :.:. : ::. NP_001 LAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQRARERKAHKAQRDALQDSLARLEGL 100 110 120 130 140 150 90 100 110 120 130 140 pF1KE1 --EELGRLAESLAR-PCA-PGA----PAEARLTSALDELLQATRDAGRRLARMEGAEAQR . .::: .: : : ::. :: . . .:: .. : ....: .: NP_001 VHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPEELGPTSLKLQRDRQELRAASEHR 160 170 180 190 200 210 150 160 170 180 pF1KE1 --PEEAGRALAAVLEELRQTRAD-LHAV-QGWAAR-----SWLPA------GCETAILFP :... .: :. :. :. : : .: : . .: : : ...:: NP_001 GPPQDS----SAPLQGRREPPASGSHRVLSGTAPKDPRQQAWSPQVPGEICGVGPTLVFP 220 230 240 250 260 270 190 200 210 220 230 pF1KE1 MRSKK--IFGSVHPVRPMRLESFSACIWVK-ATDVLNKTILFSYGTKRNPYEIQLY---- : . .: : : .: :: : ::. :. :. :.::.:. : .. :. NP_001 NASTRNVVFLSPGFVTALRALSF--CSWVRTASGRLG--TLLSYATEDNDNKLVLHGRDS 280 290 300 310 320 240 250 260 270 280 290 pF1KE1 LSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATG : :: ::.: . . .. :.: :.: :.: .: : :. .:.:: .. : NP_001 LLPGSIHFVIGDPAFRELPLQLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREG 330 340 350 360 370 380 300 310 320 330 340 350 pF1KE1 HIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHI . .: :: : .:::... :::::: . :: : ..:. ::: .: :. NP_001 YEIPPGGSLVLGQEQDS--VGGGFDSSEAFVGSMSGLAIWDRALVPGEVANLAIGKEFPT 390 400 410 420 430 440 360 370 380 pF1KE1 RGNIVGWGVTEIQPHGGAQYVS NP_001 GAILTLANAALAGGFVQGANCTCLERCP 450 460 470 >>NP_001315537 (OMIM: 613442) pentraxin-4 isoform 1 prec (478 aa) initn: 286 init1: 154 opt: 304 Z-score: 313.6 bits: 67.1 E(85289): 9.9e-11 Smith-Waterman score: 330; 31.3% identity (53.3% similar) in 319 aa overlap (64-348:131-439) 40 50 60 70 80 pF1KE1 IDNGLHPTEDPTPCACGQEHSEWDKLFIMLENSQMR--ERMLLQATDDVLRGELQRLR-- : ::.: :: .: :.:. : ::. NP_001 LAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQRARERKAHKAQRDALQDSLARLEGL 110 120 130 140 150 160 90 100 110 120 130 140 pF1KE1 --EELGRLAESLAR-PCA-PGA----PAEARLTSALDELLQATRDAGRRLARMEGAEAQR . .::: .: : : ::. :: . . .:: .. : ....: .: NP_001 VHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPEELGPTSLKLQRDRQELRAASEHR 170 180 190 200 210 220 150 160 170 180 pF1KE1 --PEEAGRALAAVLEELRQTRAD-LHAV-QGWAAR-----SWLPA------GCETAILFP :... .: :. :. :. : : .: : . .: : : ...:: NP_001 GPPQDS----SAPLQGRREPPASGSHRVLSGTAPKDPRQQAWSPQVPGEICGVGPTLVFP 230 240 250 260 270 190 200 210 220 230 pF1KE1 MRSKK--IFGSVHPVRPMRLESFSACIWVK-ATDVLNKTILFSYGTKRNPYEIQLY---- : . .: : : .: :: : ::. :. :. :.::.:. : .. :. NP_001 NASTRNVVFLSPGFVTALRALSF--CSWVRTASGRLG--TLLSYATEDNDNKLVLHGRDS 280 290 300 310 320 330 240 250 260 270 280 290 pF1KE1 LSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATG : :: ::.: . . .. :.: :.: :.: .: : :. .:.:: .. : NP_001 LLPGSIHFVIGDPAFRELPLQLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREG 340 350 360 370 380 390 300 310 320 330 340 350 pF1KE1 HIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHI . .: :: : .:::... :::::: . :: : ..:. ::: .: :. NP_001 YEIPPGGSLVLGQEQDS--VGGGFDSSEAFVGSMSGLAIWDRALVPGEVANLAIGKEFPT 400 410 420 430 440 450 360 370 380 pF1KE1 RGNIVGWGVTEIQPHGGAQYVS NP_001 GAILTLANAALAGGFVQGANCTCLERCP 460 470 >>NP_699197 (OMIM: 611691) sushi, von Willebrand factor (3571 aa) initn: 244 init1: 142 opt: 298 Z-score: 295.8 bits: 66.7 E(85289): 9.8e-10 Smith-Waterman score: 298; 30.1% identity (64.5% similar) in 166 aa overlap (204-366:1448-1608) 180 190 200 210 220 230 pF1KE1 WLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNP :.... .:.:..: .: .::.. . NP_699 CETEQSTGFNLDFEVSGIYGYVMLDGMLPSLHALTCTFWMKSSDDMNYGTPISYAVDNGS 1420 1430 1440 1450 1460 1470 240 250 260 270 280 290 pF1KE1 YEIQLYLSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATT . : .:.. :. :.:.: :.. :. ::: :. ::.: .:. .....:.:. NP_699 DNTLLLTDYNGWVLYVNGRE-KITNCPSVNDGRWHHIAITWTSANGIWKVYIDGKLSDGG 1480 1490 1500 1510 1520 1530 300 310 320 330 340 350 pF1KE1 VEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGG . ...: .: :: : .:::.. : ::. . .: : .. .:.:: ::: .... NP_699 AGLSVGLPIPGGGALVLGQEQDKK--GEGFSPAESFVGSISQLNLWDYVLSPQQVKSL-- 1540 1550 1560 1570 1580 1590 360 370 380 pF1KE1 AESCH---IRGNIVGWGVTEIQPHGGAQYVS : :: .::...: NP_699 ATSCPEELSKGNVLAWPDFLSGIVGKVKIDSKSIFCSDCPRLGGSVPHLRTASEDLKPGS 1600 1610 1620 1630 1640 1650 >>NP_000558 (OMIM: 123260) C-reactive protein isoform 1 (224 aa) initn: 125 init1: 83 opt: 250 Z-score: 263.8 bits: 56.8 E(85289): 5.9e-08 Smith-Waterman score: 250; 28.5% identity (60.0% similar) in 200 aa overlap (182-375:26-214) 160 170 180 190 200 210 pF1KE1 VLEELRQTRADLHAVQGWAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACI :..:: .: . :.. :..:..:. NP_000 MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCL 10 20 30 40 50 220 230 240 250 260 pF1KE1 --WVKATDVLNKTILFSYGTKRNPYEIQLYLSYQ-SIVFVVGGEENKL-VAEAMVSLGRW ... ... . .: :::.:::. :: .. : . . :.::: : . : :. :. NP_000 HFYTELSSTRGYSI-FSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAP--- 60 70 80 90 100 110 270 280 290 300 310 320 pF1KE1 THLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETL .:.: .:.: :.. .::.:. . . :. : . . .:::... ::.:. . NP_000 VHICTSWESASGIVEFWVDGK-PRVRKSLKKGYTVGAEASIILGQEQDS--FGGNFEGSQ 120 130 140 150 160 330 340 350 360 370 380 pF1KE1 AFSGRLTGFNIWDSVLSNEEIRET--GGAESCHIRGNIVGWGVTEIQPHGGAQYVS .. : . . :.:: ::: .:: :: : :...: . . . .: NP_000 SLVGDIGNVNMWDFVLSPDEINTIYLGGPFS----PNVLNWRALKYEVQGEVFTKPQLWP 170 180 190 200 210 220 >>NP_001315986 (OMIM: 123260) C-reactive protein isoform (224 aa) initn: 125 init1: 83 opt: 250 Z-score: 263.8 bits: 56.8 E(85289): 5.9e-08 Smith-Waterman score: 250; 28.5% identity (60.0% similar) in 200 aa overlap (182-375:26-214) 160 170 180 190 200 210 pF1KE1 VLEELRQTRADLHAVQGWAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACI :..:: .: . :.. :..:..:. NP_001 MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCL 10 20 30 40 50 220 230 240 250 260 pF1KE1 --WVKATDVLNKTILFSYGTKRNPYEIQLYLSYQ-SIVFVVGGEENKL-VAEAMVSLGRW ... ... . .: :::.:::. :: .. : . . :.::: : . : :. :. NP_001 HFYTELSSTRGYSI-FSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAP--- 60 70 80 90 100 110 270 280 290 300 310 320 pF1KE1 THLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETL .:.: .:.: :.. .::.:. . . :. : . . .:::... ::.:. . NP_001 VHICTSWESASGIVEFWVDGK-PRVRKSLKKGYTVGAEASIILGQEQDS--FGGNFEGSQ 120 130 140 150 160 330 340 350 360 370 380 pF1KE1 AFSGRLTGFNIWDSVLSNEEIRET--GGAESCHIRGNIVGWGVTEIQPHGGAQYVS .. : . . :.:: ::: .:: :: : :...: . . . .: NP_001 SLVGDIGNVNMWDFVLSPDEINTIYLGGPFS----PNVLNWRALKYEVQGEVFTKPQLWP 170 180 190 200 210 220 >>NP_001630 (OMIM: 104770) serum amyloid P-component pre (223 aa) initn: 110 init1: 91 opt: 225 Z-score: 238.7 bits: 52.1 E(85289): 1.5e-06 Smith-Waterman score: 225; 25.1% identity (60.0% similar) in 195 aa overlap (184-375:29-213) 160 170 180 190 200 210 pF1KE1 EELRQTRADLHAVQGWAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMR--LESFSACI .:: .: . :. . :.. :..:. :. NP_001 MNKPLLWISVLTSLLEAFAHTDLSGKVFVFPRES--VTDHVNLITPLEKPLQNFTLCF 10 20 30 40 50 220 230 240 250 260 270 pF1KE1 WVKATDVLNKTI-LFSYGTKRNPYEIQLYLSYQSIVFVVGGEENKLVAEAMVSLGRWTHL .: . :... ::::.:. :. .: . . :. .:...... .. .:. NP_001 --RAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGR-HKVTSKVIEKFPAPVHI 60 70 80 90 100 110 280 290 300 310 320 330 pF1KE1 CGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFS : .:.: :.. .:.:: . . :..: . .:::... :: ::.. .: NP_001 CVSWESSSGIAEFWINGT-PLVKKGLRQGYFVEAQPKIVLGQEQDS--YGGKFDRSQSFV 120 130 140 150 160 170 340 350 360 370 380 pF1KE1 GRLTGFNIWDSVLSNEEIRETGGAESCHIRGNIVGWGVTEIQPHGGAQYVS :.. . .::::: :.: .. .. . .::. : . . . .: NP_001 GEIGDLYMWDSVLPPENI--LSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 180 190 200 210 220 381 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:12:06 2016 done: Sun Nov 6 21:12:08 2016 Total Scan time: 8.850 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]