FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1688, 199 aa 1>>>pF1KE1688 199 - 199 aa - 199 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5503+/-0.00038; mu= 17.0145+/- 0.023 mean_var=61.6684+/-12.887, 0's: 0 Z-trim(113.7): 14 B-trim: 687 in 2/50 Lambda= 0.163321 statistics sampled from 23156 (23163) to 23156 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.272), width: 16 Scan time: 5.570 The best scores are: opt bits E(85289) NP_036224 (OMIM: 240500,604558,607594) inducible T ( 199) 1382 333.9 1e-91 NP_006130 (OMIM: 186760) T-cell-specific surface g ( 220) 194 54.1 2e-07 XP_011510496 (OMIM: 186760) PREDICTED: T-cell-spec ( 234) 194 54.1 2.1e-07 NP_005205 (OMIM: 123890,140300,152700,601388,60975 ( 223) 129 38.7 0.0082 >>NP_036224 (OMIM: 240500,604558,607594) inducible T-cel (199 aa) initn: 1382 init1: 1382 opt: 1382 Z-score: 1767.7 bits: 333.9 E(85289): 1e-91 Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199) 10 20 30 40 50 60 pF1KE1 MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQILCKYPDIVQQFKMQLLKGGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQILCKYPDIVQQFKMQLLKGGQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ILCDLTKTKGSGNTVSIKSLKFCHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 ILCDLTKTKGSGNTVSIKSLKFCHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPFK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VTLTGGYLHIYESQLCCQLKFWLPIGCAAFVVVCILGCILICWLTKKKYSSSVHDPNGEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 VTLTGGYLHIYESQLCCQLKFWLPIGCAAFVVVCILGCILICWLTKKKYSSSVHDPNGEY 130 140 150 160 170 180 190 pF1KE1 MFMRAVNTAKKSRLTDVTL ::::::::::::::::::: NP_036 MFMRAVNTAKKSRLTDVTL 190 >>NP_006130 (OMIM: 186760) T-cell-specific surface glyco (220 aa) initn: 131 init1: 101 opt: 194 Z-score: 254.3 bits: 54.1 E(85289): 2e-07 Smith-Waterman score: 194; 27.0% identity (60.3% similar) in 141 aa overlap (30-163:28-166) 10 20 30 40 50 pF1KE1 MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQILCKYPDIV--QQFKMQLLKG :.. ....:.. ::: . ..:. .: :: NP_006 MLRLLLALNLFPSIQVTGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 GQILCDLTKTKGSGNT---VSIKSLKFCHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFD . .. . :. . : :. : ..:.:.::.:.: :: .... :::.. .. NP_006 LDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMY 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 PPPF--KVTLTGGYLHIYESQLCCQLKFWLPIGCAAFVVVCILGCILICWLTKKKYSSSV :::. . .: .:. ..:: . : : : :. ..: .: :. NP_006 PPPYLDNEKSNGTIIHVKGKHLCPSPLF--PGPSKPFWVLVVVGGVLACYSLLVTVAFII 120 130 140 150 160 170 180 190 pF1KE1 HDPNGEYMFMRAVNTAKKSRLTDVTL NP_006 FWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRS 180 190 200 210 220 >>XP_011510496 (OMIM: 186760) PREDICTED: T-cell-specific (234 aa) initn: 131 init1: 101 opt: 194 Z-score: 253.9 bits: 54.1 E(85289): 2.1e-07 Smith-Waterman score: 194; 27.0% identity (60.3% similar) in 141 aa overlap (30-163:42-180) 10 20 30 40 50 pF1KE1 MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQILCKYPDIV--QQFKMQLLK :.. ....:.. ::: . ..:. .: : XP_011 PKGMVAVVVAVDDGDSQALAGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHK 20 30 40 50 60 70 60 70 80 90 100 110 pF1KE1 GGQILCDLTKTKGSGNT---VSIKSLKFCHSQLSNNSVSFFLYNLDHSHANYYFCNLSIF : . .. . :. . : :. : ..:.:.::.:.: :: .... :::.. .. XP_011 GLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVM 80 90 100 110 120 130 120 130 140 150 160 170 pF1KE1 DPPPF--KVTLTGGYLHIYESQLCCQLKFWLPIGCAAFVVVCILGCILICWLTKKKYSSS :::. . .: .:. ..:: . : : : :. ..: .: :. XP_011 YPPPYLDNEKSNGTIIHVKGKHLCPSPLF--PGPSKPFWVLVVVGGVLACYSLLVTVAFI 140 150 160 170 180 180 190 pF1KE1 VHDPNGEYMFMRAVNTAKKSRLTDVTL XP_011 IFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRS 190 200 210 220 230 >>NP_005205 (OMIM: 123890,140300,152700,601388,609755,61 (223 aa) initn: 59 init1: 59 opt: 129 Z-score: 171.4 bits: 38.7 E(85289): 0.0082 Smith-Waterman score: 129; 19.1% identity (54.3% similar) in 173 aa overlap (5-168:24-193) 10 20 30 40 pF1KE1 MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQIL : .:.:: : :. .. . .. : .... NP_005 MACLGFQRHKAQLNLATRTWPCTLLFFLLF---IPVFCKAMHVAQPAVVLASSRGIASFV 10 20 30 40 50 50 60 70 80 90 pF1KE1 CKY--PDIVQQFKMQLLK--GGQILCDLTKTKGSGNTVSIKSLKFCHSQLSNNSVSFFLY :.: : . . .. .:. .:. . : :: ... . ..: . :.:.:.. . NP_005 CEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQ 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE1 NLDHSHANYYFCNLSIFDPPPFKVTLTGG-YLHIYESQLCCQLKF--WL--PIGCAAFVV .: .. :.:.. .. :::. . . .: ... . . : . : :. .. . : NP_005 GLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFY 120 130 140 150 160 170 160 170 180 190 pF1KE1 VCILGCILICWLTKKKYSSSVHDPNGEYMFMRAVNTAKKSRLTDVTL .: . . . ::. NP_005 SFLLTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN 180 190 200 210 220 199 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:14:43 2016 done: Sun Nov 6 21:14:43 2016 Total Scan time: 5.570 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]