Result of FASTA (omim) for
pFN21AE0905
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0905, 177 aa
1>>>pF1KE0905 177 - 177 aa - 177 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9535+/-0.000285; mu= 11.5192+/- 0.018
mean_var=104.7405+/-20.743, 0's: 0 Z-trim(120.5): 9 B-trim: 542 in 1/56
Lambda= 0.125319
statistics sampled from 35814 (35823) to 35814 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.42), width: 16
Scan time: 6.320
The best scores are: opt bits E(85289)
NP_945317 (OMIM: 168470,613382) parathyroid hormon ( 177) 1167 220.4 1.2e-57
XP_016875164 (OMIM: 168470,613382) PREDICTED: para ( 177) 1167 220.4 1.2e-57
XP_011519077 (OMIM: 168470,613382) PREDICTED: para ( 177) 1167 220.4 1.2e-57
NP_945316 (OMIM: 168470,613382) parathyroid hormon ( 177) 1167 220.4 1.2e-57
XP_016875163 (OMIM: 168470,613382) PREDICTED: para ( 177) 1167 220.4 1.2e-57
XP_011519076 (OMIM: 168470,613382) PREDICTED: para ( 177) 1167 220.4 1.2e-57
NP_945315 (OMIM: 168470,613382) parathyroid hormon ( 175) 1150 217.3 1e-56
NP_002811 (OMIM: 168470,613382) parathyroid hormon ( 175) 1150 217.3 1e-56
>>NP_945317 (OMIM: 168470,613382) parathyroid hormone-re (177 aa)
initn: 1167 init1: 1167 opt: 1167 Z-score: 1155.7 bits: 220.4 E(85289): 1.2e-57
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
130 140 150 160 170
>>XP_016875164 (OMIM: 168470,613382) PREDICTED: parathyr (177 aa)
initn: 1167 init1: 1167 opt: 1167 Z-score: 1155.7 bits: 220.4 E(85289): 1.2e-57
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
130 140 150 160 170
>>XP_011519077 (OMIM: 168470,613382) PREDICTED: parathyr (177 aa)
initn: 1167 init1: 1167 opt: 1167 Z-score: 1155.7 bits: 220.4 E(85289): 1.2e-57
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
130 140 150 160 170
>>NP_945316 (OMIM: 168470,613382) parathyroid hormone-re (177 aa)
initn: 1167 init1: 1167 opt: 1167 Z-score: 1155.7 bits: 220.4 E(85289): 1.2e-57
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
130 140 150 160 170
>>XP_016875163 (OMIM: 168470,613382) PREDICTED: parathyr (177 aa)
initn: 1167 init1: 1167 opt: 1167 Z-score: 1155.7 bits: 220.4 E(85289): 1.2e-57
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
130 140 150 160 170
>>XP_011519076 (OMIM: 168470,613382) PREDICTED: parathyr (177 aa)
initn: 1167 init1: 1167 opt: 1167 Z-score: 1155.7 bits: 220.4 E(85289): 1.2e-57
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
130 140 150 160 170
>>NP_945315 (OMIM: 168470,613382) parathyroid hormone-re (175 aa)
initn: 1150 init1: 1150 opt: 1150 Z-score: 1139.1 bits: 217.3 E(85289): 1e-56
Smith-Waterman score: 1150; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR
130 140 150 160 170
>>NP_002811 (OMIM: 168470,613382) parathyroid hormone-re (175 aa)
initn: 1150 init1: 1150 opt: 1150 Z-score: 1139.1 bits: 217.3 E(85289): 1e-56
Smith-Waterman score: 1150; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR
130 140 150 160 170
177 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:21:15 2016 done: Sun Nov 6 21:21:16 2016
Total Scan time: 6.320 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]