FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0905, 177 aa 1>>>pF1KE0905 177 - 177 aa - 177 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1418+/-0.000699; mu= 10.4870+/- 0.043 mean_var=102.2551+/-20.139, 0's: 0 Z-trim(113.1): 11 B-trim: 0 in 0/52 Lambda= 0.126833 statistics sampled from 13767 (13770) to 13767 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.423), width: 16 Scan time: 1.970 The best scores are: opt bits E(32554) CCDS44853.1 PTHLH gene_id:5744|Hs108|chr12 ( 177) 1167 222.8 8.6e-59 CCDS8715.1 PTHLH gene_id:5744|Hs108|chr12 ( 175) 1150 219.7 7.4e-58 >>CCDS44853.1 PTHLH gene_id:5744|Hs108|chr12 (177 aa) initn: 1167 init1: 1167 opt: 1167 Z-score: 1169.0 bits: 222.8 E(32554): 8.6e-59 Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177) 10 20 30 40 50 60 pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK 70 80 90 100 110 120 130 140 150 160 170 pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH 130 140 150 160 170 >>CCDS8715.1 PTHLH gene_id:5744|Hs108|chr12 (175 aa) initn: 1150 init1: 1150 opt: 1150 Z-score: 1152.2 bits: 219.7 E(32554): 7.4e-58 Smith-Waterman score: 1150; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KE0 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS87 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS87 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK 70 80 90 100 110 120 130 140 150 160 170 pF1KE0 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS87 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR 130 140 150 160 170 177 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:21:14 2016 done: Sun Nov 6 21:21:14 2016 Total Scan time: 1.970 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]