FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6995, 222 aa 1>>>pF1KB6995 222 - 222 aa - 222 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0846+/-0.0003; mu= 10.8048+/- 0.019 mean_var=98.9646+/-19.474, 0's: 0 Z-trim(119.4): 97 B-trim: 0 in 0/53 Lambda= 0.128924 statistics sampled from 33263 (33401) to 33263 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.392), width: 16 Scan time: 5.170 The best scores are: opt bits E(85289) NP_002719 (OMIM: 605601) bone marrow proteoglycan ( 222) 1574 302.4 3.9e-82 NP_001289855 (OMIM: 605601) bone marrow proteoglyc ( 222) 1574 302.4 3.9e-82 NP_001289856 (OMIM: 605601) bone marrow proteoglyc ( 222) 1574 302.4 3.9e-82 NP_001230174 (OMIM: 605601) bone marrow proteoglyc ( 211) 802 158.8 6.3e-39 NP_006084 (OMIM: 606814) proteoglycan 3 precursor ( 225) 743 147.9 1.3e-35 NP_006498 (OMIM: 167771) lithostathine-1-beta prec ( 166) 184 43.8 0.00021 NP_002900 (OMIM: 167770) lithostathine-1-alpha pre ( 166) 176 42.3 0.00058 NP_002340 (OMIM: 604524) lymphocyte antigen 75 pre (1722) 184 44.5 0.0013 NP_001152824 (OMIM: 609846) regenerating islet-der ( 158) 169 41.0 0.0014 NP_114433 (OMIM: 609846) regenerating islet-derive ( 158) 169 41.0 0.0014 NP_002429 (OMIM: 153618) macrophage mannose recept (1456) 182 44.1 0.0015 XP_011523845 (OMIM: 612264) PREDICTED: C-type mann (1156) 173 42.3 0.0039 NP_001193948 (OMIM: 151445) low affinity immunoglo ( 320) 165 40.5 0.004 XP_005272519 (OMIM: 151445) PREDICTED: low affinit ( 321) 165 40.5 0.004 NP_001993 (OMIM: 151445) low affinity immunoglobul ( 321) 165 40.5 0.004 NP_001207429 (OMIM: 151445) low affinity immunoglo ( 321) 165 40.5 0.004 NP_006030 (OMIM: 612264) C-type mannose receptor 2 (1479) 173 42.4 0.0048 >>NP_002719 (OMIM: 605601) bone marrow proteoglycan isof (222 aa) initn: 1574 init1: 1574 opt: 1574 Z-score: 1595.6 bits: 302.4 E(85289): 3.9e-82 Smith-Waterman score: 1574; 99.5% identity (100.0% similar) in 222 aa overlap (1-222:1-222) 10 20 30 40 50 60 pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW 130 140 150 160 170 180 190 200 210 220 pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY :::::::::::::::::::::::::.:::::::::::::::: NP_002 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY 190 200 210 220 >>NP_001289855 (OMIM: 605601) bone marrow proteoglycan i (222 aa) initn: 1574 init1: 1574 opt: 1574 Z-score: 1595.6 bits: 302.4 E(85289): 3.9e-82 Smith-Waterman score: 1574; 99.5% identity (100.0% similar) in 222 aa overlap (1-222:1-222) 10 20 30 40 50 60 pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW 130 140 150 160 170 180 190 200 210 220 pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY :::::::::::::::::::::::::.:::::::::::::::: NP_001 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY 190 200 210 220 >>NP_001289856 (OMIM: 605601) bone marrow proteoglycan i (222 aa) initn: 1574 init1: 1574 opt: 1574 Z-score: 1595.6 bits: 302.4 E(85289): 3.9e-82 Smith-Waterman score: 1574; 99.5% identity (100.0% similar) in 222 aa overlap (1-222:1-222) 10 20 30 40 50 60 pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW 130 140 150 160 170 180 190 200 210 220 pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY :::::::::::::::::::::::::.:::::::::::::::: NP_001 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY 190 200 210 220 >>NP_001230174 (OMIM: 605601) bone marrow proteoglycan i (211 aa) initn: 770 init1: 770 opt: 802 Z-score: 819.9 bits: 158.8 E(85289): 6.3e-39 Smith-Waterman score: 1468; 94.6% identity (95.0% similar) in 222 aa overlap (1-222:1-211) 10 20 30 40 50 60 pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLL--------- 70 80 90 100 110 130 140 150 160 170 180 pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 --FTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW 120 130 140 150 160 190 200 210 220 pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY :::::::::::::::::::::::::.:::::::::::::::: NP_001 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY 170 180 190 200 210 >>NP_006084 (OMIM: 606814) proteoglycan 3 precursor [Hom (225 aa) initn: 763 init1: 657 opt: 743 Z-score: 760.2 bits: 147.9 E(85289): 1.3e-35 Smith-Waterman score: 743; 50.2% identity (72.7% similar) in 227 aa overlap (1-222:1-225) 10 20 30 40 50 pF1KB6 MKLPLLLA-LLFGAVSALHLRSETSTFETPLGAKTLPED-EETPEQEMEETPCREL---E :. ::: ::.:.::::::.... .:. : .: . . ::: . . .:. : NP_006 MQCLLLLPFLLLGTVSALHLENDAPHLESLETQADLGQDLDSSKEQERDLALTEEVIQAE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB6 EEEEWGSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSL :: .:. .: . . :.:: : .::.. ::.::: :.: : : :. :::::::. NP_006 GEEVKASACQDNFEDEEAMESD--PAALDKDFQCPREEDIVEVQGSPRCKICRYLLVRTP 70 80 90 100 110 120 130 140 150 160 170 pF1KB6 QTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWV .::..: .: ::: :::::::.::.:::::: .:..::.:::::: . : .:: :. NP_006 KTFAEAQNVCSRCYGGNLVSIHDFNFNYRIQCCTSTVNQAQVWIGGNLRGWFLWKRFCWT 120 130 140 150 160 170 180 190 200 210 220 pF1KB6 DGSRWNFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY :::.::::::. :: . : ::::::.:::::::.: ..:::.::. NP_006 DGSHWNFAYWSPGQPGNGQGSCVALCTKGGYWRRAQCDKQLPFVCSF 180 190 200 210 220 >>NP_006498 (OMIM: 167771) lithostathine-1-beta precurso (166 aa) initn: 91 init1: 43 opt: 184 Z-score: 200.1 bits: 43.8 E(85289): 0.00021 Smith-Waterman score: 184; 23.3% identity (56.7% similar) in 150 aa overlap (78-222:25-164) 50 60 70 80 90 100 pF1KB6 ETPCRELEEEEEWGSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTC : .. . ..::: .. . . : NP_006 MAQTNSFFMLISSLMFLSLSQGQESQTELPNPRISCPEGTNAYR-------SYC 10 20 30 40 110 120 130 140 150 160 pF1KB6 RYLLVRSLQTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSV--SALNQGQVWIGGRITG : . .. .:. .: . :. :::::. . . . . :. ....:::: . NP_006 -YYFNEDPETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESSTDDSNVWIG--LHD 50 60 70 80 90 100 170 180 190 200 210 220 pF1KB6 SGRCRRFQWVDGSRWNFAYWAAHQPWS-RGGHCVALCTRGGY--WRRAHCLRRLPFICSY . ::..: .:: .. : . .: : .:.:..: . .:. :. : ... :.:.. NP_006 PKKNRRWHWSSGSLVSYKSWDTGSPSSANAGYCASLTSCSGFKKWKDESCEKKFSFVCKF 110 120 130 140 150 160 NP_006 KN >>NP_002900 (OMIM: 167770) lithostathine-1-alpha precurs (166 aa) initn: 83 init1: 43 opt: 176 Z-score: 192.1 bits: 42.3 E(85289): 0.00058 Smith-Waterman score: 177; 23.8% identity (54.4% similar) in 160 aa overlap (68-222:18-164) 40 50 60 70 80 90 pF1KB6 DEETPEQEMEETPCRELEEEEEWGSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVK :...: . .:. ..::: .. . NP_002 MAQTSSYFMLISCLMFLSQSQGQEAQTELPQA---RISCPEGTNAYR 10 20 30 40 100 110 120 130 140 150 pF1KB6 VVGIPGCQTCRYLLVRSLQTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSV--SALNQG . : :. .. .:. .: . :. :::::. . . . . :. .. NP_002 -------SYCYYF-NEDRETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDF 50 60 70 80 90 160 170 180 190 200 210 pF1KB6 QVWIGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRG-GHCVALCTRGGY--WRRAHC .:::: . . ::..: .:: .. :. : : . :.::.: . :. :. . : NP_002 NVWIG--LHDPKKNRRWHWSSGSLVSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPC 100 110 120 130 140 150 220 pF1KB6 LRRLPFICSY .. :.:.. NP_002 EDKFSFVCKFKN 160 >>NP_002340 (OMIM: 604524) lymphocyte antigen 75 precurs (1722 aa) initn: 159 init1: 77 opt: 184 Z-score: 185.8 bits: 44.5 E(85289): 0.0013 Smith-Waterman score: 184; 26.0% identity (57.5% similar) in 127 aa overlap (101-220:366-485) 80 90 100 110 120 130 pF1KB6 DGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQAWFTCRRCYR .:. : :::: .....: :. . NP_002 LPYVCRKPLNNTVELTDVWTYSDTRCDAGWLPNNGFC-YLLVNESNSWDKAHAKCK-AFS 340 350 360 370 380 390 140 150 160 170 180 pF1KB6 GNLVSIHNFNINYRIQCSVSALN----QGQVWIGGRITGSGRCRRFQWVDGSRWNFAYWA ..:.:::.. .. :. :. . .:::: . . ::: ::.. ...:: NP_002 SDLISIHSLA---DVEVVVTKLHNEDIKEEVWIGLKNINIPTL--FQWSDGTEVTLTYWD 400 410 420 430 440 190 200 210 220 pF1KB6 AHQP---WSRGGHCVALCTRGGYWRRAHCLRRLPFICSY ..: ... .::. . : :. : ..: ..: NP_002 ENEPNVPYNKTPNCVSYLGELGQWKVQSCEEKLKYVCKRKGEKLNDASSDKMCPPDEGWK 450 460 470 480 490 500 NP_002 RHGETCYKIYEDEVPFGTNCNLTITSRFEQEYLNDLMKKYDKSLRKYFWTGLRDVDSCGE 510 520 530 540 550 560 >>NP_001152824 (OMIM: 609846) regenerating islet-derived (158 aa) initn: 102 init1: 55 opt: 169 Z-score: 185.4 bits: 41.0 E(85289): 0.0014 Smith-Waterman score: 169; 27.0% identity (59.8% similar) in 122 aa overlap (107-222:41-156) 80 90 100 110 120 130 pF1KB6 ISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQAWFTCRRCYRG-NLVS : : :.:...:.: . :. : .:.: NP_001 LLSCLAKTGVLGDIIMRPSCAPGWFYHKSNC-YGYFRKLRNWSDAELECQSYGNGAHLAS 20 30 40 50 60 140 150 160 170 180 190 pF1KB6 IHNFNINYRIQCSVSALNQGQ-VWIGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRG : ... : .:. ...: .::: . . ...::.::. . . :... : : NP_001 ILSLKEASTIAEYISGYQRSQPIWIG--LHDPQKRQQWQWIDGAMYLYRSWSGK---SMG 70 80 90 100 110 120 200 210 220 pF1KB6 G--HCVALCTRGGY--WRRAHCLRRLPFICSY : ::. . . ... : .: .: :.:.: NP_001 GNKHCAEMSSNNNFLTWSSNECNKRQHFLCKYRP 130 140 150 >>NP_114433 (OMIM: 609846) regenerating islet-derived pr (158 aa) initn: 102 init1: 55 opt: 169 Z-score: 185.4 bits: 41.0 E(85289): 0.0014 Smith-Waterman score: 169; 27.0% identity (59.8% similar) in 122 aa overlap (107-222:41-156) 80 90 100 110 120 130 pF1KB6 ISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQAWFTCRRCYRG-NLVS : : :.:...:.: . :. : .:.: NP_114 LLSCLAKTGVLGDIIMRPSCAPGWFYHKSNC-YGYFRKLRNWSDAELECQSYGNGAHLAS 20 30 40 50 60 140 150 160 170 180 190 pF1KB6 IHNFNINYRIQCSVSALNQGQ-VWIGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRG : ... : .:. ...: .::: . . ...::.::. . . :... : : NP_114 ILSLKEASTIAEYISGYQRSQPIWIG--LHDPQKRQQWQWIDGAMYLYRSWSGK---SMG 70 80 90 100 110 120 200 210 220 pF1KB6 G--HCVALCTRGGY--WRRAHCLRRLPFICSY : ::. . . ... : .: .: :.:.: NP_114 GNKHCAEMSSNNNFLTWSSNECNKRQHFLCKYRP 130 140 150 222 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:22:28 2016 done: Sun Nov 6 21:22:29 2016 Total Scan time: 5.170 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]