FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7696, 414 aa 1>>>pF1KB7696 414 - 414 aa - 414 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.0030+/-0.00038; mu= -1.0004+/- 0.024 mean_var=305.0044+/-62.247, 0's: 0 Z-trim(123.6): 394 B-trim: 225 in 2/53 Lambda= 0.073438 statistics sampled from 43391 (43791) to 43391 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.513), width: 16 Scan time: 6.840 The best scores are: opt bits E(85289) NP_066285 (OMIM: 107773,615779) COUP transcription ( 414) 2871 317.1 5.2e-86 NP_005645 (OMIM: 132890,615722) COUP transcription ( 423) 2459 273.4 7.3e-73 NP_001138627 (OMIM: 107773,615779) COUP transcript ( 281) 1781 201.4 2.3e-51 NP_001138629 (OMIM: 107773,615779) COUP transcript ( 261) 1740 197.1 4.4e-50 NP_001138628 (OMIM: 107773,615779) COUP transcript ( 261) 1740 197.1 4.4e-50 XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP ( 273) 1707 193.6 5.1e-49 NP_005225 (OMIM: 132880) nuclear receptor subfamil ( 404) 1200 140.0 1e-32 NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 1001 119.0 2.4e-26 NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 1001 119.0 2.5e-26 NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 978 116.6 1.5e-25 XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 975 116.2 1.5e-25 NP_008848 (OMIM: 180247) retinoic acid receptor RX ( 463) 976 116.3 1.5e-25 NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 975 116.3 1.9e-25 NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 967 115.3 2.5e-25 NP_001243500 (OMIM: 180247) retinoic acid receptor ( 340) 958 114.3 4.6e-25 NP_001243499 (OMIM: 180247) retinoic acid receptor ( 340) 958 114.3 4.6e-25 XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 956 114.2 6.2e-25 XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 950 113.6 1e-24 NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 925 110.8 5.3e-24 NP_001274111 (OMIM: 125850,125853,600281,616026) h ( 439) 798 97.5 7.1e-20 NP_001274112 (OMIM: 125850,125853,600281,616026) h ( 449) 798 97.5 7.2e-20 NP_001245284 (OMIM: 125850,125853,600281,616026) h ( 467) 789 96.5 1.4e-19 NP_001025174 (OMIM: 125850,125853,600281,616026) h ( 442) 788 96.4 1.5e-19 NP_787110 (OMIM: 125850,125853,600281,616026) hepa ( 452) 788 96.4 1.5e-19 XP_005260464 (OMIM: 125850,125853,600281,616026) P ( 513) 789 96.6 1.5e-19 NP_001274113 (OMIM: 125850,125853,600281,616026) h ( 392) 786 96.2 1.6e-19 NP_849180 (OMIM: 125850,125853,600281,616026) hepa ( 464) 787 96.3 1.6e-19 NP_000448 (OMIM: 125850,125853,600281,616026) hepa ( 474) 787 96.3 1.7e-19 NP_001025175 (OMIM: 125850,125853,600281,616026) h ( 395) 776 95.1 3.3e-19 NP_849181 (OMIM: 125850,125853,600281,616026) hepa ( 417) 775 95.0 3.7e-19 XP_016868862 (OMIM: 605966) PREDICTED: hepatocyte ( 408) 773 94.8 4.2e-19 XP_016868863 (OMIM: 605966) PREDICTED: hepatocyte ( 408) 773 94.8 4.2e-19 XP_016868865 (OMIM: 605966) PREDICTED: hepatocyte ( 408) 773 94.8 4.2e-19 NP_001317490 (OMIM: 605966) hepatocyte nuclear fac ( 408) 773 94.8 4.2e-19 XP_016868864 (OMIM: 605966) PREDICTED: hepatocyte ( 408) 773 94.8 4.2e-19 NP_004124 (OMIM: 605966) hepatocyte nuclear factor ( 445) 773 94.8 4.5e-19 XP_016876575 (OMIM: 602167,608565) PREDICTED: ster ( 508) 678 84.8 5.3e-16 NP_004443 (OMIM: 602167,608565) steroid hormone re ( 508) 678 84.8 5.3e-16 XP_011534856 (OMIM: 602167,608565) PREDICTED: ster ( 529) 678 84.8 5.4e-16 XP_011534855 (OMIM: 602167,608565) PREDICTED: ster ( 531) 678 84.8 5.5e-16 XP_011534852 (OMIM: 602167,608565) PREDICTED: ster ( 552) 678 84.8 5.6e-16 XP_016876574 (OMIM: 602167,608565) PREDICTED: ster ( 552) 678 84.8 5.6e-16 XP_011534849 (OMIM: 602167,608565) PREDICTED: ster ( 573) 678 84.9 5.8e-16 XP_016856137 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 669 83.8 9.1e-16 NP_001230442 (OMIM: 602969) estrogen-related recep ( 435) 669 83.8 9.1e-16 XP_016856127 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 669 83.8 9.1e-16 NP_001230440 (OMIM: 602969) estrogen-related recep ( 435) 669 83.8 9.1e-16 XP_016856132 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 669 83.8 9.1e-16 XP_016856130 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 669 83.8 9.1e-16 NP_001127757 (OMIM: 602969) estrogen-related recep ( 435) 669 83.8 9.1e-16 >>NP_066285 (OMIM: 107773,615779) COUP transcription fac (414 aa) initn: 2871 init1: 2871 opt: 2871 Z-score: 1665.2 bits: 317.1 E(85289): 5.2e-86 Smith-Waterman score: 2871; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414) 10 20 30 40 50 60 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 GGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 GGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 CPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 CPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 YISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 YISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 QVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 QVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 KLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 KLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRF 310 320 330 340 350 360 370 380 390 400 410 pF1KB7 GKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 GKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ 370 380 390 400 410 >>NP_005645 (OMIM: 132890,615722) COUP transcription fac (423 aa) initn: 2398 init1: 2271 opt: 2459 Z-score: 1429.1 bits: 273.4 E(85289): 7.3e-73 Smith-Waterman score: 2459; 85.9% identity (91.1% similar) in 426 aa overlap (1-414:1-421) 10 20 30 40 pF1KB7 MAMVVSTWRDPQDEVPGSQG---SQASQAPPVPG---------PPPGAPHTPQTPGQGGP ::::::.::::::.: :.. . :.:: : ::::::::::: : NP_005 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB7 ASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVR .::. .. ::: ::. :.::::::::::::::::::::::::::::::::::: NP_005 PATPGTAGDKGQGPPGS-----GQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVR 70 80 90 100 110 110 120 130 140 150 160 pF1KB7 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTN :::.:::::::::::::::::::::::::::::::::::::::::::::::. ::.:::: NP_005 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTN 120 130 140 150 160 170 170 180 190 200 210 220 pF1KB7 GDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR ::::: : :::::::::::::::::::.::::::::::::::::::::::.::::::::: NP_005 GDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWAR 180 190 200 210 220 230 230 240 250 260 270 280 pF1KB7 NIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAF ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: NP_005 NIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAF 240 250 260 270 280 290 290 300 310 320 330 340 pF1KB7 MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEY ::::::::::::::::::::::::::::::::::::::::::.::.:::::::::::::: NP_005 MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEY 300 310 320 330 340 350 350 360 370 380 390 400 pF1KB7 VRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNW :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 VRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNW 360 370 380 390 400 410 410 pF1KB7 PYMAIQ :::.:: NP_005 PYMSIQCS 420 >>NP_001138627 (OMIM: 107773,615779) COUP transcription (281 aa) initn: 1779 init1: 1779 opt: 1781 Z-score: 1043.3 bits: 201.4 E(85289): 2.3e-51 Smith-Waterman score: 1781; 97.8% identity (98.2% similar) in 275 aa overlap (140-414:7-281) 110 120 130 140 150 160 pF1KB7 NLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNG :. : :::::::::::::::::::::: NP_001 MQAVWDLEQGKYGFAVQRGRMPPTQPTHGQFALTNG 10 20 30 170 180 190 200 210 220 pF1KB7 DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARN 40 50 60 70 80 90 230 240 250 260 270 280 pF1KB7 IPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFM 100 110 120 130 140 150 290 300 310 320 330 340 pF1KB7 DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYV 160 170 180 190 200 210 350 360 370 380 390 400 pF1KB7 RSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP 220 230 240 250 260 270 410 pF1KB7 YMAIQ ::::: NP_001 YMAIQ 280 >>NP_001138629 (OMIM: 107773,615779) COUP transcription (261 aa) initn: 1740 init1: 1740 opt: 1740 Z-score: 1020.2 bits: 197.1 E(85289): 4.4e-50 Smith-Waterman score: 1740; 100.0% identity (100.0% similar) in 261 aa overlap (154-414:1-261) 130 140 150 160 170 180 pF1KB7 DQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYIS :::::::::::::::::::::::::::::: NP_001 MPPTQPTHGQFALTNGDPLNCHSYLSGYIS 10 20 30 190 200 210 220 230 240 pF1KB7 LLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVA 40 50 60 70 80 90 250 260 270 280 290 300 pF1KB7 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 100 110 120 130 140 150 310 320 330 340 350 360 pF1KB7 ALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL 160 170 180 190 200 210 370 380 390 400 410 pF1KB7 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ 220 230 240 250 260 >>NP_001138628 (OMIM: 107773,615779) COUP transcription (261 aa) initn: 1740 init1: 1740 opt: 1740 Z-score: 1020.2 bits: 197.1 E(85289): 4.4e-50 Smith-Waterman score: 1740; 100.0% identity (100.0% similar) in 261 aa overlap (154-414:1-261) 130 140 150 160 170 180 pF1KB7 DQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYIS :::::::::::::::::::::::::::::: NP_001 MPPTQPTHGQFALTNGDPLNCHSYLSGYIS 10 20 30 190 200 210 220 230 240 pF1KB7 LLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVA 40 50 60 70 80 90 250 260 270 280 290 300 pF1KB7 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 100 110 120 130 140 150 310 320 330 340 350 360 pF1KB7 ALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL 160 170 180 190 200 210 370 380 390 400 410 pF1KB7 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ 220 230 240 250 260 >>XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP tra (273 aa) initn: 1707 init1: 1707 opt: 1707 Z-score: 1001.1 bits: 193.6 E(85289): 5.1e-49 Smith-Waterman score: 1707; 95.1% identity (98.9% similar) in 267 aa overlap (148-414:5-271) 120 130 140 150 160 170 pF1KB7 NRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSY .:::::::::::. ::.::::::::: : : XP_016 MFGYSVQRGRMPPTQPNPGQYALTNGDPLNGHCY 10 20 30 180 190 200 210 220 230 pF1KB7 LSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ ::::::::::::::::::.::::::::::::::::::::::.:::::::::::::::::: XP_016 LSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 40 50 60 70 80 90 240 250 260 270 280 290 pF1KB7 ITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQE :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQE 100 110 120 130 140 150 300 310 320 330 340 350 pF1KB7 QVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQP :::::::::::::::::::::::::::::::::.::.::::::::::::::::::::::: XP_016 QVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQP 160 170 180 190 200 210 360 370 380 390 400 410 pF1KB7 TRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ .:::::::::::::::::::::::::::::::::::::::::::::::::::::.:: XP_016 SRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS 220 230 240 250 260 270 >>NP_005225 (OMIM: 132880) nuclear receptor subfamily 2 (404 aa) initn: 1725 init1: 1111 opt: 1200 Z-score: 708.5 bits: 140.0 E(85289): 1e-32 Smith-Waterman score: 1701; 64.2% identity (81.5% similar) in 400 aa overlap (31-414:9-404) 10 20 30 40 50 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAG-G : : : . . : : : .. ..:. : NP_005 MAMVTGGWGGPGGDTNGVDKAG-GYPRAAEDDSASPPG 10 20 30 60 70 80 90 100 110 pF1KB7 QGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANR .. . :: :... ...:::::::::::::: :::::::::::::.:::::::::.:: NP_005 AASDAEPG-DEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNR 40 50 60 70 80 90 120 130 140 150 160 170 pF1KB7 NCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDP-------- .: :::::::::::::::::..::::.:::::::.: . : : : ..:.: NP_005 DCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHSLP--GAVAASSGSPPGSALAAV 100 110 120 130 140 150 180 190 200 210 220 pF1KB7 -----LNCHSYLSGYISLLLRAEPYPTS--RFGSQCMQPNNIMGIENICELAARMLFSAV : . .: :. ::::::::.. :::. . ..::.:.::::::.:::.: NP_005 ASGGDLFPGQPVSELIAQLLRAEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTV 160 170 180 190 200 210 230 240 250 260 270 280 pF1KB7 EWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADR ::::. ::::.: ..::::::::.::::::::::: ..:::.:::::::::::.::.:.: NP_005 EWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAER 220 230 240 250 260 270 290 300 310 320 330 340 pF1KB7 VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCA .:::::..: :::::.:: :.::::::.:::::.::: ::::::: :::::::::.: : NP_005 AVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVA 280 290 300 310 320 330 350 360 370 380 390 400 pF1KB7 LEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGS : ::::.:::.:: :::.::::::.::.: .:.: ::::.:::::::::::::::::::: NP_005 LTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDMLLSGS 340 350 360 370 380 390 410 pF1KB7 SFNWPYMAIQ .::::: . : NP_005 TFNWPYGSGQ 400 >>NP_001278849 (OMIM: 180245) retinoic acid receptor RXR (435 aa) initn: 566 init1: 532 opt: 1001 Z-score: 594.1 bits: 119.0 E(85289): 2.4e-26 Smith-Waterman score: 1001; 39.9% identity (70.6% similar) in 398 aa overlap (11-400:37-428) 10 20 30 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVP--GPPPGAPH : . . . .: .. ..: .: : :.:. NP_001 HPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQ 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB7 --TPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTC .:..: ... : : :. :... . .:: :..:::.::::::: ..: NP_001 LSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI-CAICGDRSSGKHYGVYSC 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB7 EGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPP ::::.::::.::..:.:::: :..: ::...::.::::: .::: .::.:::::. :. NP_001 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 130 140 150 160 170 180 160 170 180 190 200 210 pF1KB7 TQPTHGQFALTNG--DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICE . .... :.. . . . : . ... ..: : . .: . .::. . :::. NP_001 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPND--PVTNICQ 190 200 210 220 230 240 220 230 240 250 260 270 pF1KB7 LAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAG : ..::. ::::. :: : .: . ::: ::: :.::.. . .. :. .. . :::. : NP_001 AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-G 250 260 270 280 290 300 280 290 300 310 320 330 pF1KB7 LHASPMSADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVA ::. :: : :..: :.. : : :.. ...:..: .::.:::::. :. :::. : NP_001 LHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 310 320 330 340 350 360 340 350 360 370 380 390 pF1KB7 HVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPI .::.:.:: .:: : . .::.:: ::.:::::::.::... . .:.::: .:.: ::: NP_001 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 370 380 390 400 410 420 400 410 pF1KB7 ETLIRDMLLSGSSFNWPYMAIQ .:.. .:: NP_001 DTFLMEMLEAPHQMT 430 >>NP_002948 (OMIM: 180245) retinoic acid receptor RXR-al (462 aa) initn: 566 init1: 532 opt: 1001 Z-score: 593.8 bits: 119.0 E(85289): 2.5e-26 Smith-Waterman score: 1001; 39.9% identity (70.6% similar) in 398 aa overlap (11-400:64-455) 10 20 30 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVP--GPPPGAPH : . . . .: .. ..: .: : :.:. NP_002 HPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQ 40 50 60 70 80 90 40 50 60 70 80 90 pF1KB7 --TPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTC .:..: ... : : :. :... . .:: :..:::.::::::: ..: NP_002 LSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI-CAICGDRSSGKHYGVYSC 100 110 120 130 140 150 100 110 120 130 140 150 pF1KB7 EGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPP ::::.::::.::..:.:::: :..: ::...::.::::: .::: .::.:::::. :. NP_002 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 160 170 180 190 200 210 160 170 180 190 200 210 pF1KB7 TQPTHGQFALTNG--DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICE . .... :.. . . . : . ... ..: : . .: . .::. . :::. NP_002 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPND--PVTNICQ 220 230 240 250 260 270 220 230 240 250 260 270 pF1KB7 LAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAG : ..::. ::::. :: : .: . ::: ::: :.::.. . .. :. .. . :::. : NP_002 AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-G 280 290 300 310 320 280 290 300 310 320 330 pF1KB7 LHASPMSADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVA ::. :: : :..: :.. : : :.. ...:..: .::.:::::. :. :::. : NP_002 LHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 330 340 350 360 370 380 340 350 360 370 380 390 pF1KB7 HVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPI .::.:.:: .:: : . .::.:: ::.:::::::.::... . .:.::: .:.: ::: NP_002 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 390 400 410 420 430 440 400 410 pF1KB7 ETLIRDMLLSGSSFNWPYMAIQ .:.. .:: NP_002 DTFLMEMLEAPHQMT 450 460 >>NP_068811 (OMIM: 180246) retinoic acid receptor RXR-be (533 aa) initn: 733 init1: 630 opt: 978 Z-score: 579.8 bits: 116.6 E(85289): 1.5e-25 Smith-Waterman score: 999; 38.8% identity (64.2% similar) in 433 aa overlap (11-400:106-526) 10 20 30 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHT- : . .:. :: : ::.: :: :.: NP_068 SGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPV 80 90 100 110 120 130 40 50 60 pF1KB7 ------------PQTPGQGGPASTP-----AQTAAGGQGGP------------------- : :: .::.:.: .. .::.: : NP_068 ISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPP 140 150 160 170 180 190 70 80 90 100 110 120 pF1KB7 GGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPI ::::. :. :..:::.::::::: ..:::::.::::..:..:.:.:: :..: . NP_068 GGPGAGKRL------CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTV 200 210 220 230 240 130 140 150 160 170 180 pF1KB7 DQHHRNQCQYCRLKKCLKVGMRREAVQRGRM-PPTQPTHGQFALTNGDPLNCHSYLSGYI :...::.::::: .::: .::.:::::. :. . :. : . . : . . NP_068 DKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAEL 250 260 270 280 290 300 190 200 210 220 230 pF1KB7 SLLLRAEPY---PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQIT .. ... : . :: .::. . :::. : ..::. ::::. :: : .: . NP_068 AVEQKSDQGVEGPGGTGGSGS-SPND--PVTNICQAADKQLFTLVEWAKRIPHFSSLPLD 310 320 330 340 350 360 240 250 260 270 280 290 pF1KB7 DQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADR--VVAFMDHIRIFQE ::: ::: :.::.. . .. :. .. . :::. :::. :: : :..: :.. : NP_068 DQVILLRAGWNELLIASFSHRSIDVRDGILLAT-GLHVHRNSAHSAGVGAIFD--RVLTE 370 380 390 400 410 420 300 310 320 330 340 350 pF1KB7 QVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQP : :.. ...:..: .::.::.::. :: :::. ..:: :.:: .:: : ...::.: NP_068 LVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 430 440 450 460 470 480 360 370 380 390 400 410 pF1KB7 TRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ ::.:::::::.::... . .:.::: .:.: :::.:.. .:: NP_068 GRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA 490 500 510 520 530 414 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:24:15 2016 done: Sun Nov 6 21:24:17 2016 Total Scan time: 6.840 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]