FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7696, 414 aa 1>>>pF1KB7696 414 - 414 aa - 414 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.2370+/-0.000985; mu= 3.8018+/- 0.060 mean_var=293.9560+/-59.495, 0's: 0 Z-trim(116.1): 117 B-trim: 154 in 1/52 Lambda= 0.074805 statistics sampled from 16539 (16656) to 16539 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.512), width: 16 Scan time: 3.460 The best scores are: opt bits E(32554) CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 ( 414) 2871 322.6 4.3e-88 CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 ( 423) 2459 278.2 1.1e-74 CCDS45358.1 NR2F2 gene_id:7026|Hs108|chr15 ( 281) 1781 204.8 8.4e-53 CCDS45359.1 NR2F2 gene_id:7026|Hs108|chr15 ( 261) 1740 200.3 1.7e-51 CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 1200 142.3 8.1e-34 CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 ( 462) 1001 120.8 2.6e-27 CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 ( 533) 978 118.4 1.6e-26 CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 ( 463) 976 118.2 1.7e-26 CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 ( 537) 975 118.1 2e-26 CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 ( 340) 958 116.1 5.3e-26 CCDS74728.1 HNF4A gene_id:3172|Hs108|chr20 ( 449) 798 98.9 1e-20 CCDS46604.1 HNF4A gene_id:3172|Hs108|chr20 ( 442) 788 97.8 2.1e-20 CCDS42876.1 HNF4A gene_id:3172|Hs108|chr20 ( 452) 788 97.9 2.1e-20 CCDS46605.1 HNF4A gene_id:3172|Hs108|chr20 ( 464) 787 97.8 2.3e-20 CCDS13330.1 HNF4A gene_id:3172|Hs108|chr20 ( 474) 787 97.8 2.4e-20 CCDS68131.1 HNF4A gene_id:3172|Hs108|chr20 ( 395) 776 96.5 4.8e-20 CCDS13331.1 HNF4A gene_id:3172|Hs108|chr20 ( 417) 775 96.4 5.3e-20 CCDS83303.1 HNF4G gene_id:3174|Hs108|chr8 ( 408) 773 96.2 6.1e-20 CCDS6220.2 HNF4G gene_id:3174|Hs108|chr8 ( 445) 773 96.2 6.5e-20 CCDS9850.2 ESRRB gene_id:2103|Hs108|chr14 ( 508) 678 86.0 8.7e-17 CCDS1517.1 ESRRG gene_id:2104|Hs108|chr1 ( 435) 669 85.0 1.5e-16 CCDS41468.1 ESRRG gene_id:2104|Hs108|chr1 ( 458) 669 85.0 1.6e-16 CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 608 78.4 1.5e-14 CCDS73750.1 NR2E3 gene_id:10002|Hs108|chr15 ( 410) 593 76.8 4.3e-14 CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 ( 598) 595 77.1 4.8e-14 CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 ( 611) 595 77.2 4.9e-14 CCDS11366.1 RARA gene_id:5914|Hs108|chr17 ( 462) 592 76.7 5e-14 CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 ( 652) 595 77.2 5.1e-14 CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 590 76.5 5.7e-14 CCDS42317.1 RARA gene_id:5914|Hs108|chr17 ( 457) 584 75.8 9.1e-14 CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 582 75.5 9.3e-14 CCDS2642.1 RARB gene_id:5915|Hs108|chr3 ( 448) 568 74.1 3e-13 CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 ( 385) 541 71.1 2e-12 CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 ( 422) 541 71.2 2.2e-12 CCDS2201.1 NR4A2 gene_id:4929|Hs108|chr2 ( 598) 518 68.8 1.5e-11 >>CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 (414 aa) initn: 2871 init1: 2871 opt: 2871 Z-score: 1695.1 bits: 322.6 E(32554): 4.3e-88 Smith-Waterman score: 2871; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414) 10 20 30 40 50 60 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 GGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 CPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 CPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 YISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 YISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 QVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 QVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 KLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 KLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRF 310 320 330 340 350 360 370 380 390 400 410 pF1KB7 GKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ 370 380 390 400 410 >>CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 (423 aa) initn: 2398 init1: 2271 opt: 2459 Z-score: 1454.7 bits: 278.2 E(32554): 1.1e-74 Smith-Waterman score: 2459; 85.9% identity (91.1% similar) in 426 aa overlap (1-414:1-421) 10 20 30 40 pF1KB7 MAMVVSTWRDPQDEVPGSQG---SQASQAPPVPG---------PPPGAPHTPQTPGQGGP ::::::.::::::.: :.. . :.:: : ::::::::::: : CCDS40 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB7 ASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVR .::. .. ::: ::. :.::::::::::::::::::::::::::::::::::: CCDS40 PATPGTAGDKGQGPPGS-----GQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVR 70 80 90 100 110 110 120 130 140 150 160 pF1KB7 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTN :::.:::::::::::::::::::::::::::::::::::::::::::::::. ::.:::: CCDS40 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTN 120 130 140 150 160 170 170 180 190 200 210 220 pF1KB7 GDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR ::::: : :::::::::::::::::::.::::::::::::::::::::::.::::::::: CCDS40 GDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWAR 180 190 200 210 220 230 230 240 250 260 270 280 pF1KB7 NIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAF ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: CCDS40 NIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAF 240 250 260 270 280 290 290 300 310 320 330 340 pF1KB7 MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEY ::::::::::::::::::::::::::::::::::::::::::.::.:::::::::::::: CCDS40 MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEY 300 310 320 330 340 350 350 360 370 380 390 400 pF1KB7 VRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNW :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 VRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNW 360 370 380 390 400 410 410 pF1KB7 PYMAIQ :::.:: CCDS40 PYMSIQCS 420 >>CCDS45358.1 NR2F2 gene_id:7026|Hs108|chr15 (281 aa) initn: 1779 init1: 1779 opt: 1781 Z-score: 1061.4 bits: 204.8 E(32554): 8.4e-53 Smith-Waterman score: 1781; 97.8% identity (98.2% similar) in 275 aa overlap (140-414:7-281) 110 120 130 140 150 160 pF1KB7 NLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNG :. : :::::::::::::::::::::: CCDS45 MQAVWDLEQGKYGFAVQRGRMPPTQPTHGQFALTNG 10 20 30 170 180 190 200 210 220 pF1KB7 DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARN 40 50 60 70 80 90 230 240 250 260 270 280 pF1KB7 IPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 IPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFM 100 110 120 130 140 150 290 300 310 320 330 340 pF1KB7 DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYV 160 170 180 190 200 210 350 360 370 380 390 400 pF1KB7 RSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP 220 230 240 250 260 270 410 pF1KB7 YMAIQ ::::: CCDS45 YMAIQ 280 >>CCDS45359.1 NR2F2 gene_id:7026|Hs108|chr15 (261 aa) initn: 1740 init1: 1740 opt: 1740 Z-score: 1037.9 bits: 200.3 E(32554): 1.7e-51 Smith-Waterman score: 1740; 100.0% identity (100.0% similar) in 261 aa overlap (154-414:1-261) 130 140 150 160 170 180 pF1KB7 DQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYIS :::::::::::::::::::::::::::::: CCDS45 MPPTQPTHGQFALTNGDPLNCHSYLSGYIS 10 20 30 190 200 210 220 230 240 pF1KB7 LLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVA 40 50 60 70 80 90 250 260 270 280 290 300 pF1KB7 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 100 110 120 130 140 150 310 320 330 340 350 360 pF1KB7 ALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 ALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL 160 170 180 190 200 210 370 380 390 400 410 pF1KB7 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ 220 230 240 250 260 >>CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 (404 aa) initn: 1725 init1: 1111 opt: 1200 Z-score: 720.6 bits: 142.3 E(32554): 8.1e-34 Smith-Waterman score: 1701; 64.2% identity (81.5% similar) in 400 aa overlap (31-414:9-404) 10 20 30 40 50 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAG-G : : : . . : : : .. ..:. : CCDS12 MAMVTGGWGGPGGDTNGVDKAG-GYPRAAEDDSASPPG 10 20 30 60 70 80 90 100 110 pF1KB7 QGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANR .. . :: :... ...:::::::::::::: :::::::::::::.:::::::::.:: CCDS12 AASDAEPG-DEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNR 40 50 60 70 80 90 120 130 140 150 160 170 pF1KB7 NCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDP-------- .: :::::::::::::::::..::::.:::::::.: . : : : ..:.: CCDS12 DCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHSLP--GAVAASSGSPPGSALAAV 100 110 120 130 140 150 180 190 200 210 220 pF1KB7 -----LNCHSYLSGYISLLLRAEPYPTS--RFGSQCMQPNNIMGIENICELAARMLFSAV : . .: :. ::::::::.. :::. . ..::.:.::::::.:::.: CCDS12 ASGGDLFPGQPVSELIAQLLRAEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTV 160 170 180 190 200 210 230 240 250 260 270 280 pF1KB7 EWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADR ::::. ::::.: ..::::::::.::::::::::: ..:::.:::::::::::.::.:.: CCDS12 EWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAER 220 230 240 250 260 270 290 300 310 320 330 340 pF1KB7 VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCA .:::::..: :::::.:: :.::::::.:::::.::: ::::::: :::::::::.: : CCDS12 AVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVA 280 290 300 310 320 330 350 360 370 380 390 400 pF1KB7 LEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGS : ::::.:::.:: :::.::::::.::.: .:.: ::::.:::::::::::::::::::: CCDS12 LTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDMLLSGS 340 350 360 370 380 390 410 pF1KB7 SFNWPYMAIQ .::::: . : CCDS12 TFNWPYGSGQ 400 >>CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 (462 aa) initn: 566 init1: 532 opt: 1001 Z-score: 603.8 bits: 120.8 E(32554): 2.6e-27 Smith-Waterman score: 1001; 39.9% identity (70.6% similar) in 398 aa overlap (11-400:64-455) 10 20 30 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVP--GPPPGAPH : . . . .: .. ..: .: : :.:. CCDS35 HPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQ 40 50 60 70 80 90 40 50 60 70 80 90 pF1KB7 --TPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTC .:..: ... : : :. :... . .:: :..:::.::::::: ..: CCDS35 LSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI-CAICGDRSSGKHYGVYSC 100 110 120 130 140 150 100 110 120 130 140 150 pF1KB7 EGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPP ::::.::::.::..:.:::: :..: ::...::.::::: .::: .::.:::::. :. CCDS35 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 160 170 180 190 200 210 160 170 180 190 200 210 pF1KB7 TQPTHGQFALTNG--DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICE . .... :.. . . . : . ... ..: : . .: . .::. . :::. CCDS35 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPND--PVTNICQ 220 230 240 250 260 270 220 230 240 250 260 270 pF1KB7 LAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAG : ..::. ::::. :: : .: . ::: ::: :.::.. . .. :. .. . :::. : CCDS35 AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-G 280 290 300 310 320 280 290 300 310 320 330 pF1KB7 LHASPMSADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVA ::. :: : :..: :.. : : :.. ...:..: .::.:::::. :. :::. : CCDS35 LHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 330 340 350 360 370 380 340 350 360 370 380 390 pF1KB7 HVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPI .::.:.:: .:: : . .::.:: ::.:::::::.::... . .:.::: .:.: ::: CCDS35 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 390 400 410 420 430 440 400 410 pF1KB7 ETLIRDMLLSGSSFNWPYMAIQ .:.. .:: CCDS35 DTFLMEMLEAPHQMT 450 460 >>CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 (533 aa) initn: 733 init1: 630 opt: 978 Z-score: 589.6 bits: 118.4 E(32554): 1.6e-26 Smith-Waterman score: 999; 38.8% identity (64.2% similar) in 433 aa overlap (11-400:106-526) 10 20 30 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHT- : . .:. :: : ::.: :: :.: CCDS47 SGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPV 80 90 100 110 120 130 40 50 60 pF1KB7 ------------PQTPGQGGPASTP-----AQTAAGGQGGP------------------- : :: .::.:.: .. .::.: : CCDS47 ISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPP 140 150 160 170 180 190 70 80 90 100 110 120 pF1KB7 GGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPI ::::. :. :..:::.::::::: ..:::::.::::..:..:.:.:: :..: . CCDS47 GGPGAGKRL------CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTV 200 210 220 230 240 130 140 150 160 170 180 pF1KB7 DQHHRNQCQYCRLKKCLKVGMRREAVQRGRM-PPTQPTHGQFALTNGDPLNCHSYLSGYI :...::.::::: .::: .::.:::::. :. . :. : . . : . . CCDS47 DKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAEL 250 260 270 280 290 300 190 200 210 220 230 pF1KB7 SLLLRAEPY---PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQIT .. ... : . :: .::. . :::. : ..::. ::::. :: : .: . CCDS47 AVEQKSDQGVEGPGGTGGSGS-SPND--PVTNICQAADKQLFTLVEWAKRIPHFSSLPLD 310 320 330 340 350 360 240 250 260 270 280 290 pF1KB7 DQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADR--VVAFMDHIRIFQE ::: ::: :.::.. . .. :. .. . :::. :::. :: : :..: :.. : CCDS47 DQVILLRAGWNELLIASFSHRSIDVRDGILLAT-GLHVHRNSAHSAGVGAIFD--RVLTE 370 380 390 400 410 420 300 310 320 330 340 350 pF1KB7 QVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQP : :.. ...:..: .::.::.::. :: :::. ..:: :.:: .:: : ...::.: CCDS47 LVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 430 440 450 460 470 480 360 370 380 390 400 410 pF1KB7 TRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ ::.:::::::.::... . .:.::: .:.: :::.:.. .:: CCDS47 GRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA 490 500 510 520 530 >>CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 (463 aa) initn: 822 init1: 389 opt: 976 Z-score: 589.2 bits: 118.2 E(32554): 1.7e-26 Smith-Waterman score: 976; 40.9% identity (69.6% similar) in 391 aa overlap (23-400:75-456) 10 20 30 40 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPG--PPPG----APHTPQTPGQG ....:: . ::: :: . : . CCDS12 YTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGINLVAPPSSQLNVVN 50 60 70 80 90 100 50 60 70 80 90 100 pF1KB7 GPASTPAQTAAGGQGGPGG---PGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFF . .:. : : :. :... . .:: :..:::.::::::: ..:::::.:: CCDS12 SVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHI-CAICGDRSSGKHYGVYSCEGCKGFF 110 120 130 140 150 160 110 120 130 140 150 160 pF1KB7 KRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTH ::..:..: :::: :..: ::...::.::::: .::: .::.::::: : : .. CCDS12 KRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESE 170 180 190 200 210 220 170 180 190 200 210 220 pF1KB7 GQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF .. : .. . . . : . ... :: : .:.. :. .. . :::. : ..:: CCDS12 AECATSGHEDMPVERILEAELAV----EP-KTESYGDMNMENSTNDPVTNICHAADKQLF 230 240 250 260 270 230 240 250 260 270 280 pF1KB7 SAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMS . ::::. :: : :: . ::: ::: :.::.. . .. :. .. . :::. :::. : CCDS12 TLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLAT-GLHVHRSS 280 290 300 310 320 330 290 300 310 320 330 pF1KB7 ADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQE : : ...: :.. : : :.: ...:..: .::.:::::. :: :::. ..::.:.: CCDS12 AHSAGVGSIFD--RVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLRE 340 350 360 370 380 390 340 350 360 370 380 390 pF1KB7 KSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM : .:: :....::.:: ::.:::::::.::... . .:.::: .:.: :::.:.. .: CCDS12 KVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 400 410 420 430 440 450 400 410 pF1KB7 LLSGSSFNWPYMAIQ : CCDS12 LETPLQIT 460 >>CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 (537 aa) initn: 1014 init1: 408 opt: 975 Z-score: 587.8 bits: 118.1 E(32554): 2e-26 Smith-Waterman score: 996; 38.6% identity (64.1% similar) in 435 aa overlap (11-400:106-530) 10 20 30 pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHT- : . .:. :: : ::.: :: :.: CCDS59 SGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPV 80 90 100 110 120 130 40 50 60 pF1KB7 ------------PQTPGQGGPASTP-----AQTAAGGQGGP------------------- : :: .::.:.: .. .::.: : CCDS59 ISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPP 140 150 160 170 180 190 70 80 90 100 110 120 pF1KB7 GGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPI ::::. :. :..:::.::::::: ..:::::.::::..:..:.:.:: :..: . CCDS59 GGPGAGKRL------CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTV 200 210 220 230 240 130 140 150 160 170 180 pF1KB7 DQHHRNQCQYCRLKKCLKVGMRREAVQRGRM-PPTQPTHGQFALTNGDPLNCHSYLSGYI :...::.::::: .::: .::.:::::. :. . :. : . . : . . CCDS59 DKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAEL 250 260 270 280 290 300 190 200 210 220 230 pF1KB7 SLLLRAEPY---PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQIT .. ... : . :: .::. . :::. : ..::. ::::. :: : .: . CCDS59 AVEQKSDQGVEGPGGTGGSGS-SPND--PVTNICQAADKQLFTLVEWAKRIPHFSSLPLD 310 320 330 340 350 360 240 250 260 270 280 290 pF1KB7 DQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADR--VVAFMDHI--RIF ::: ::: :.::.. . .. :. .. . :::. :::. :: : :..:. :.. CCDS59 DQVILLRAGWNELLIASFSHRSIDVRDGILLAT-GLHVHRNSAHSAGVGAIFDRSLSRVL 370 380 390 400 410 420 300 310 320 330 340 350 pF1KB7 QEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPN : : :.. ...:..: .::.::.::. :: :::. ..:: :.:: .:: : ...::. CCDS59 TELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPE 430 440 450 460 470 480 360 370 380 390 400 410 pF1KB7 QPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ : ::.:::::::.::... . .:.::: .:.: :::.:.. .:: CCDS59 QQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA 490 500 510 520 530 >>CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 (340 aa) initn: 788 init1: 389 opt: 958 Z-score: 580.4 bits: 116.1 E(32554): 5.3e-26 Smith-Waterman score: 958; 43.7% identity (73.5% similar) in 339 aa overlap (66-400:4-333) 40 50 60 70 80 90 pF1KB7 APHTPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFT :... . .:: :..:::.::::::: .. CCDS72 MNYPSTSPGSLVKHI-CAICGDRSSGKHYGVYS 10 20 30 100 110 120 130 140 150 pF1KB7 CEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGR :::::.::::..:..: :::: :..: ::...::.::::: .::: .::.::::: : : CCDS72 CEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR 40 50 60 70 80 90 160 170 180 190 200 210 pF1KB7 MPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENIC .... : .. . . . : . ... :: : .:.. :. .. . ::: CCDS72 SRERAESEAECATSGHEDMPVERILEAELAV----EP-KTESYGDMNMENSTNDPVTNIC 100 110 120 130 140 220 230 240 250 260 270 pF1KB7 ELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAA . : ..::. ::::. :: : :: . ::: ::: :.::.. . .. :. .. . :::. CCDS72 HAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLAT- 150 160 170 180 190 200 280 290 300 310 320 330 pF1KB7 GLHASPMSADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDV :::. :: : ...: :.. : : :.: ...:..: .::.:::::. :: :::. CCDS72 GLHVHRSSAHSAGVGSIFD--RVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNP 210 220 230 240 250 260 340 350 360 370 380 390 pF1KB7 AHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTP ..::.:.:: .:: :....::.:: ::.:::::::.::... . .:.::: .:.: :: CCDS72 SEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTP 270 280 290 300 310 320 400 410 pF1KB7 IETLIRDMLLSGSSFNWPYMAIQ :.:.. .:: CCDS72 IDTFLMEMLETPLQIT 330 340 414 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:24:14 2016 done: Sun Nov 6 21:24:15 2016 Total Scan time: 3.460 Total Display time: 0.070 Function used was FASTA [36.3.4 Apr, 2011]