FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1736, 242 aa 1>>>pF1KE1736 242 - 242 aa - 242 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7578+/-0.000317; mu= 17.3739+/- 0.020 mean_var=62.3311+/-12.922, 0's: 0 Z-trim(115.4): 3 B-trim: 1250 in 1/48 Lambda= 0.162451 statistics sampled from 25768 (25771) to 25768 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.302), width: 16 Scan time: 6.350 The best scores are: opt bits E(85289) NP_057041 (OMIM: 612491) methylthioribulose-1-phos ( 242) 1700 406.6 2e-113 XP_011518456 (OMIM: 612491) PREDICTED: methylthior ( 259) 1555 372.7 3.5e-103 XP_016873364 (OMIM: 612491) PREDICTED: methylthior ( 170) 1168 281.8 5.1e-76 >>NP_057041 (OMIM: 612491) methylthioribulose-1-phosphat (242 aa) initn: 1700 init1: 1700 opt: 1700 Z-score: 2157.5 bits: 406.6 E(85289): 2e-113 Smith-Waterman score: 1700; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242) 10 20 30 40 50 60 pF1KE1 MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGDEIYIAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGDEIYIAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 SGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPSQLPVGENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPSQLPVGENG 190 200 210 220 230 240 pF1KE1 IV :: NP_057 IV >>XP_011518456 (OMIM: 612491) PREDICTED: methylthioribul (259 aa) initn: 1555 init1: 1555 opt: 1555 Z-score: 1973.4 bits: 372.7 E(85289): 3.5e-103 Smith-Waterman score: 1555; 99.6% identity (100.0% similar) in 225 aa overlap (18-242:35-259) 10 20 30 40 pF1KE1 MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGG .::::::::::::::::::::::::::::: XP_011 VAYMAIKIEVQGHQSFAIPSGTFWLWRSLLSQDKEHPRYLIPELCKQFYHLGWVTGTGGG 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 ISLKHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ISLKHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTM 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE1 RGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENT 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE1 PEEKDLKDRMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PEEKDLKDRMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKV 190 200 210 220 230 240 230 240 pF1KE1 GLDPSQLPVGENGIV ::::::::::::::: XP_011 GLDPSQLPVGENGIV 250 >>XP_016873364 (OMIM: 612491) PREDICTED: methylthioribul (170 aa) initn: 1168 init1: 1168 opt: 1168 Z-score: 1485.8 bits: 281.8 E(85289): 5.1e-76 Smith-Waterman score: 1168; 100.0% identity (100.0% similar) in 170 aa overlap (73-242:1-170) 50 60 70 80 90 100 pF1KE1 GTGGGISLKHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFM :::::::::::::::::::::::::::::: XP_016 MFVCDINEKDISGPSPSKKLKKSQCTPLFM 10 20 30 110 120 130 140 150 160 pF1KE1 NAYTMRGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NAYTMRGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVP 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE1 IIENTPEEKDLKDRMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IIENTPEEKDLKDRMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAV 100 110 120 130 140 150 230 240 pF1KE1 SMKKVGLDPSQLPVGENGIV :::::::::::::::::::: XP_016 SMKKVGLDPSQLPVGENGIV 160 170 242 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:24:52 2016 done: Sun Nov 6 21:24:53 2016 Total Scan time: 6.350 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]