FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8975, 371 aa 1>>>pF1KB8975 371 - 371 aa - 371 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8997+/-0.000835; mu= 7.7510+/- 0.051 mean_var=221.8076+/-45.762, 0's: 0 Z-trim(114.8): 165 B-trim: 132 in 1/52 Lambda= 0.086116 statistics sampled from 15132 (15313) to 15132 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.47), width: 16 Scan time: 2.470 The best scores are: opt bits E(32554) CCDS9659.1 1 gene_id:7080|Hs108|chr14 ( 371) 2542 328.0 8e-90 CCDS41945.1 1 gene_id:7080|Hs108|chr14 ( 401) 2542 328.1 8.4e-90 CCDS42855.1 4 gene_id:644524|Hs108|chr20 ( 354) 882 121.8 9.4e-28 >>CCDS9659.1 1 gene_id:7080|Hs108|chr14 (371 aa) initn: 2542 init1: 2542 opt: 2542 Z-score: 1726.1 bits: 328.0 E(32554): 8e-90 Smith-Waterman score: 2542; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371) 10 20 30 40 50 60 pF1KB8 MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 AAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 AAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTM 310 320 330 340 350 360 370 pF1KB8 SCSTLLYGRTW ::::::::::: CCDS96 SCSTLLYGRTW 370 >>CCDS41945.1 1 gene_id:7080|Hs108|chr14 (401 aa) initn: 2542 init1: 2542 opt: 2542 Z-score: 1725.7 bits: 328.1 E(32554): 8.4e-90 Smith-Waterman score: 2542; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:31-401) 10 20 30 pF1KB8 MSMSPKHTTPFSVSDILSPLEESYKKVGME :::::::::::::::::::::::::::::: CCDS41 MWSGGSGKARGWEAAAGGRSSPGRLSRRRIMSMSPKHTTPFSVSDILSPLEESYKKVGME 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB8 GGGLGAPLAAYRQGQAAPPTAAMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 GGGLGAPLAAYRQGQAAPPTAAMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGN 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB8 LGNMSELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 LGNMSELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVS 130 140 150 160 170 180 160 170 180 190 200 210 pF1KB8 KNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 KNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ 190 200 210 220 230 240 220 230 240 250 260 270 pF1KB8 NHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 NHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC 250 260 270 280 290 300 280 290 300 310 320 330 pF1KB8 QAGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 QAGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDL 310 320 330 340 350 360 340 350 360 370 pF1KB8 AHHAASPAALQGQVSSLSHLNSSGSDYGTMSCSTLLYGRTW ::::::::::::::::::::::::::::::::::::::::: CCDS41 AHHAASPAALQGQVSSLSHLNSSGSDYGTMSCSTLLYGRTW 370 380 390 400 >>CCDS42855.1 4 gene_id:644524|Hs108|chr20 (354 aa) initn: 953 init1: 470 opt: 882 Z-score: 611.8 bits: 121.8 E(32554): 9.4e-28 Smith-Waterman score: 1207; 54.0% identity (69.3% similar) in 404 aa overlap (1-371:1-354) 10 20 30 40 pF1KB8 MSMSPKHTTPFSVSDILSPLEESYKKVG--MEGG--GLGAPLAAYRQGQAAPP------- ::.::::::::::::::::.::.::: . :.:. ::::::.: .: :: CCDS42 MSLSPKHTTPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAA 10 20 30 40 50 60 50 60 70 80 90 pF1KB8 -TAAMQ-QHAV-GHHGAVTAA-----------YHMTAAGVPQLSHSAVGGYCNGNLGNMS .:.:: .::. ::..:..:: ::: :: :. :.:.:.::::.::::. CCDS42 TVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPP-GVSQFPHGAMGSYCNGGLGNMG 70 80 90 100 110 100 110 120 130 140 150 pF1KB8 ELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAP ::: : : ::..:. ::::::::::. .:::::::..:.:..:::.: ...:..:...: CCDS42 ELPAYTDGMRGGAA-TGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGP 120 130 140 150 160 170 160 170 180 190 200 210 pF1KB8 L-----PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ : .:::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ 180 190 200 210 220 230 220 230 240 250 260 270 pF1KB8 NHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC ::::::::::::::::: :::. :: : : ::::::::::::::::: CCDS42 NHRYKMKRQAKDKAAQQ-LQQE-------GGLGPPPPP---PPSPRRVAVPVLVKDGKPC 240 250 260 270 280 280 290 300 310 320 pF1KB8 QAGA--PAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSP : :: :.:: : : :: . .: CCDS42 QNGASTPTPGQA-------------------------------------GPQPPAPTPAP 290 300 310 330 340 350 360 370 pF1KB8 DLAHHAASPAALQGQVSSLSHLNSSGSDY-GTMSCSTLLYGRTW .: . . :: ::.: ..:. :......: : . ..::::::: CCDS42 ELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW 320 330 340 350 371 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:26:10 2016 done: Sun Nov 6 21:26:10 2016 Total Scan time: 2.470 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]