FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1818, 278 aa 1>>>pF1KE1818 278 - 278 aa - 278 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5110+/-0.000304; mu= 20.1304+/- 0.019 mean_var=68.8917+/-14.100, 0's: 0 Z-trim(117.4): 87 B-trim: 0 in 0/51 Lambda= 0.154522 statistics sampled from 29250 (29345) to 29250 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.344), width: 16 Scan time: 7.290 The best scores are: opt bits E(85289) XP_011508421 (OMIM: 188360) PREDICTED: T-cell surf ( 278) 1917 435.8 4.2e-122 NP_001755 (OMIM: 188360) T-cell surface glycoprote ( 333) 1688 384.8 1.1e-106 XP_016858274 (OMIM: 188360) PREDICTED: T-cell surf ( 239) 1376 315.1 7.7e-86 XP_016858273 (OMIM: 188360) PREDICTED: T-cell surf ( 269) 1375 315.0 9.7e-86 XP_016858275 (OMIM: 188360) PREDICTED: T-cell surf ( 220) 1374 314.7 9.9e-86 NP_001756 (OMIM: 188340) T-cell surface glycoprote ( 333) 1019 235.7 8.8e-62 XP_005245636 (OMIM: 188340) PREDICTED: T-cell surf ( 346) 1019 235.7 9e-62 NP_001754 (OMIM: 188370) T-cell surface glycoprote ( 327) 944 219.0 9.3e-57 XP_011508435 (OMIM: 188411) PREDICTED: T-cell surf ( 333) 915 212.5 8.4e-55 NP_001036050 (OMIM: 188411) T-cell surface glycopr ( 321) 910 211.4 1.8e-54 NP_001307581 (OMIM: 188370) T-cell surface glycopr ( 316) 904 210.0 4.4e-54 NP_001036049 (OMIM: 188411) T-cell surface glycopr ( 290) 899 208.9 9e-54 XP_011508436 (OMIM: 188411) PREDICTED: T-cell surf ( 290) 899 208.9 9e-54 NP_001036048 (OMIM: 188411) T-cell surface glycopr ( 376) 899 209.0 1.1e-53 NP_112155 (OMIM: 188411) T-cell surface glycoprote ( 388) 899 209.0 1.1e-53 NP_001757 (OMIM: 188410) antigen-presenting glycop ( 335) 780 182.4 9.6e-46 XP_011508427 (OMIM: 188410) PREDICTED: antigen-pre ( 335) 780 182.4 9.6e-46 NP_001172043 (OMIM: 188411) T-cell surface glycopr ( 289) 548 130.6 3.2e-30 NP_001306074 (OMIM: 188410) antigen-presenting gly ( 242) 496 119.0 8.8e-27 XP_011508429 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 495 118.7 9.9e-27 XP_006711684 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 495 118.7 9.9e-27 XP_005245640 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 495 118.7 9.9e-27 NP_001172037 (OMIM: 188411) T-cell surface glycopr ( 231) 334 82.8 6.3e-16 NP_001172044 (OMIM: 188411) T-cell surface glycopr ( 286) 334 82.9 7.3e-16 NP_001172036 (OMIM: 188411) T-cell surface glycopr ( 298) 334 83.0 7.6e-16 NP_001172042 (OMIM: 188411) T-cell surface glycopr ( 144) 316 78.6 7.3e-15 NP_001172039 (OMIM: 188411) T-cell surface glycopr ( 132) 311 77.5 1.5e-14 NP_001036052 (OMIM: 188411) T-cell surface glycopr ( 101) 300 74.9 6.8e-14 NP_001036051 (OMIM: 188411) T-cell surface glycopr ( 187) 300 75.2 1e-13 NP_001172041 (OMIM: 188411) T-cell surface glycopr ( 199) 300 75.2 1.1e-13 NP_001522 (OMIM: 600764) major histocompatibility ( 341) 214 56.3 9.4e-08 NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 214 56.3 9.8e-08 NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 214 56.3 9.8e-08 NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 182 49.1 1.2e-05 XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 179 48.3 1.7e-05 NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 163 44.9 0.00025 XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 163 44.9 0.00025 NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 163 44.9 0.00026 NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 160 44.3 0.00041 NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 159 44.0 0.00048 NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 158 43.8 0.00056 XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 158 43.8 0.00056 XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 158 43.8 0.0006 XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 158 43.8 0.0006 XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 151 42.2 0.0016 NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 151 42.2 0.0016 XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 151 42.3 0.0017 XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 151 42.3 0.0018 XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 151 42.3 0.0019 XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 151 42.3 0.0019 >>XP_011508421 (OMIM: 188360) PREDICTED: T-cell surface (278 aa) initn: 1917 init1: 1917 opt: 1917 Z-score: 2313.1 bits: 435.8 E(85289): 4.2e-122 Smith-Waterman score: 1917; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278) 10 20 30 40 50 60 pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR 190 200 210 220 230 240 250 260 270 pF1KE1 GNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP :::::::::::::::::::::::::::::::::::::: XP_011 GNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP 250 260 270 >>NP_001755 (OMIM: 188360) T-cell surface glycoprotein C (333 aa) initn: 1903 init1: 1676 opt: 1688 Z-score: 2036.2 bits: 384.8 E(85289): 1.1e-106 Smith-Waterman score: 1688; 91.9% identity (94.4% similar) in 270 aa overlap (1-270:1-264) 10 20 30 40 50 60 pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR 190 200 210 220 230 240 250 260 270 pF1KE1 GNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP :. . :. :. :.:. ::.: NP_001 GEQEQQGTQ-LGDILPNANWT-----WYLRATLDVADGEAAGLSCRVKHSSLEGQDIILY 250 260 270 280 290 >-- initn: 245 init1: 241 opt: 252 Z-score: 306.1 bits: 64.7 E(85289): 2.6e-10 Smith-Waterman score: 252; 71.2% identity (83.1% similar) in 59 aa overlap (222-278:277-333) 200 210 220 230 240 pF1KE1 LNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHV--SGFYPKPVWVMWMRGNPTSIGSI : :.: :.. . . ..: :::::::: NP_001 GTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSSLEGQDIILYWR--NPTSIGSI 250 260 270 280 290 300 250 260 270 pF1KE1 VLAIIVPSLLLLLCLALWYMRRRSYQNIP ::::::::::::::::::::::::::::: NP_001 VLAIIVPSLLLLLCLALWYMRRRSYQNIP 310 320 330 >>XP_016858274 (OMIM: 188360) PREDICTED: T-cell surface (239 aa) initn: 1376 init1: 1376 opt: 1376 Z-score: 1662.1 bits: 315.1 E(85289): 7.7e-86 Smith-Waterman score: 1376; 99.5% identity (99.5% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR :::::::::::::::::::::: : XP_016 YETCPRYLLGVLNAGKADLQRQGKMQLSYFLIVGLRSWTEFWAMECVVLEALASSSPDH 190 200 210 220 230 >>XP_016858273 (OMIM: 188360) PREDICTED: T-cell surface (269 aa) initn: 1374 init1: 1374 opt: 1375 Z-score: 1660.3 bits: 315.0 E(85289): 9.7e-86 Smith-Waterman score: 1375; 95.3% identity (97.7% similar) in 215 aa overlap (1-215:1-214) 10 20 30 40 50 60 pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR :::::::::::::::::::::: . .. ..: :: XP_016 YETCPRYLLGVLNAGKADLQRQGH-RVTKGAGESPRASWCQGNEQWKQDPSWVSGHKETK 190 200 210 220 230 250 260 270 pF1KE1 GNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP XP_016 ALPDLGSHLLLQKKLYSYMEFYSAMKRNGY 240 250 260 >>XP_016858275 (OMIM: 188360) PREDICTED: T-cell surface (220 aa) initn: 1374 init1: 1374 opt: 1374 Z-score: 1660.2 bits: 314.7 E(85289): 9.9e-86 Smith-Waterman score: 1374; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202) 10 20 30 40 50 60 pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR :::::::::::::::::::::: XP_016 YETCPRYLLGVLNAGKADLQRQGHIRISHEPSSCLLSHSQ 190 200 210 220 >>NP_001756 (OMIM: 188340) T-cell surface glycoprotein C (333 aa) initn: 1097 init1: 656 opt: 1019 Z-score: 1230.2 bits: 235.7 E(85289): 8.8e-62 Smith-Waterman score: 1019; 59.0% identity (80.7% similar) in 249 aa overlap (1-248:1-249) 10 20 30 40 50 60 pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS ::.: : :::.:.:::.. : : .:::::: ::.:..::. :::::::.:: ::::: NP_001 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC .::: :::. :::::::..:...:: .:: :.::..::.:: :.. :::::.: ::: NP_001 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALII-QYQGIMETVRIL ::::: . .:.. :..:::.:: .:.. :::: :: ::. : :. ::.:. ::: : NP_001 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 LYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWM . ::::.:::.:.::: ..:::.::::::: :: : :.: ::::.:::::::::: :: NP_001 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM 190 200 210 220 230 240 240 250 260 270 pF1KE1 RGNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP :.. ..:. NP_001 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF 250 260 270 280 290 300 >>XP_005245636 (OMIM: 188340) PREDICTED: T-cell surface (346 aa) initn: 1063 init1: 656 opt: 1019 Z-score: 1230.0 bits: 235.7 E(85289): 9e-62 Smith-Waterman score: 1019; 59.0% identity (80.7% similar) in 249 aa overlap (1-248:1-249) 10 20 30 40 50 60 pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS ::.: : :::.:.:::.. : : .:::::: ::.:..::. :::::::.:: ::::: XP_005 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC .::: :::. :::::::..:...:: .:: :.::..::.:: :.. :::::.: ::: XP_005 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALII-QYQGIMETVRIL ::::: . .:.. :..:::.:: .:.. :::: :: ::. : :. ::.:. ::: : XP_005 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 LYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWM . ::::.:::.:.::: ..:::.::::::: :: : :.: ::::.:::::::::: :: XP_005 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM 190 200 210 220 230 240 240 250 260 270 pF1KE1 RGNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP :.. ..:. XP_005 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWAHIR 250 260 270 280 290 300 >>NP_001754 (OMIM: 188370) T-cell surface glycoprotein C (327 aa) initn: 992 init1: 911 opt: 944 Z-score: 1139.9 bits: 219.0 E(85289): 9.3e-57 Smith-Waterman score: 944; 52.6% identity (73.3% similar) in 270 aa overlap (1-270:1-263) 10 20 30 40 50 60 pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS ::.: . ::::: :: .. ... : :::: .:: : .: :. ::::.::: : ::: NP_001 MLFLLLPLLAVL-PGDGNADGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTWDS 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC .:.: .:: :::.::::..: ::: .::. . . .. .: ..:..:::::: .:: NP_001 NSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL ::::: . :::. : : ::.: .: : .: : .:. :..:: .. : : . .. :: NP_001 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR .::::..::.:.:::: :::::::::::: :::::::.::::::::::::::::::::: NP_001 SDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMR 180 190 200 210 220 230 250 260 270 pF1KE1 GNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP :. . :. . :.:: . ::.: NP_001 GEQEQQGTQR-GDILPS-----ADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLY 240 250 260 270 280 290 >>XP_011508435 (OMIM: 188411) PREDICTED: T-cell surface (333 aa) initn: 935 init1: 520 opt: 915 Z-score: 1104.9 bits: 212.5 E(85289): 8.4e-55 Smith-Waterman score: 915; 48.6% identity (73.1% similar) in 286 aa overlap (1-277:1-283) 10 20 30 40 50 pF1KE1 MLLLPFQLLAVLFPGGNSE--HAFQG-------PTSFHVIQTSSFTNSTWAQTQGSGWLD :::: . . .. :: :. .:.:. ::...:::::.: .::...::::: XP_011 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 DLQIHGWDSDSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYP ::: ::::. :: ::::::.:::: .:. .:. .:..:. .: . :: ::.::..:: XP_011 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 FEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQG :::: .:::... : :: : : :::: .. : ::: .: :::..: .. .: XP_011 FEIQILAGCRMN---APQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLD 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 IMETVRILLYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYP : : .. :: .::::.: :...::...:.:.:::::::: :::::::::::::::::::: XP_011 IKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYP 180 190 200 210 220 230 240 250 260 270 pF1KE1 KPVWVMWMRGNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP ::::::::::. . . .. .. .:..:. . .. : .:: XP_011 KPVWVMWMRGGYSIFLILICLTVIVTLVILVVVDSRLKKQSSNKNILSPHTPSPVFLMGA 240 250 260 270 280 290 XP_011 NTQDTKNSRHQFCLAQVSWIKNRVLKKWKTRLNQLW 300 310 320 330 >>NP_001036050 (OMIM: 188411) T-cell surface glycoprotei (321 aa) initn: 915 init1: 500 opt: 910 Z-score: 1099.1 bits: 211.4 E(85289): 1.8e-54 Smith-Waterman score: 910; 49.6% identity (73.8% similar) in 282 aa overlap (1-273:1-278) 10 20 30 40 50 pF1KE1 MLLLPFQLLAVLFPGGNSE--HAFQG-------PTSFHVIQTSSFTNSTWAQTQGSGWLD :::: . . .. :: :. .:.:. ::...:::::.: .::...::::: NP_001 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 DLQIHGWDSDSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYP ::: ::::. :: ::::::.:::: .:. .:. .:..:. .: . :: ::.::..:: NP_001 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 FEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQG :::: .:::.... :: : : :::: .. : ::: .: :::..: .. .: NP_001 FEIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLD 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 IMETVRILLYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYP : : .. :: .::::.: :...::...:.:.:::::::: :::::::::::::::::::: NP_001 IKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYP 180 190 200 210 220 230 240 250 260 270 pF1KE1 KPVWVMWMRGNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP ::::::::::. :: :.. . : :..: .. ....: NP_001 KPVWVMWMRGG-YSIFLILICLTVIVTLVILVVVDSRLKKQSPVFLMGANTQDTKNSRHQ 240 250 260 270 280 290 NP_001 FCLAQVSWIKNRVLKKWKTRLNQLW 300 310 320 278 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:27:55 2016 done: Sun Nov 6 21:27:56 2016 Total Scan time: 7.290 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]