Result of FASTA (omim) for
pFN21AE0284
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0284, 337 aa
1>>>pF1KE0284 337 - 337 aa - 337 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5662+/-0.000311; mu= 16.3657+/- 0.019
mean_var=95.9292+/-19.520, 0's: 0 Z-trim(119.4): 25 B-trim: 528 in 1/51
Lambda= 0.130948
statistics sampled from 33441 (33466) to 33441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.392), width: 16
Scan time: 7.700
The best scores are: opt bits E(85289)
NP_076971 (OMIM: 609917) ERI1 exoribonuclease 3 is ( 337) 2391 461.5 1.2e-129
XP_016857790 (OMIM: 609917) PREDICTED: ERI1 exorib ( 335) 2367 456.9 2.7e-128
XP_005271243 (OMIM: 609917) PREDICTED: ERI1 exorib ( 286) 1967 381.3 1.4e-105
NP_001288627 (OMIM: 609917) ERI1 exoribonuclease 3 ( 259) 1798 349.3 5.1e-96
NP_001288628 (OMIM: 609917) ERI1 exoribonuclease 3 ( 259) 1798 349.3 5.1e-96
XP_016857792 (OMIM: 609917) PREDICTED: ERI1 exorib ( 259) 1798 349.3 5.1e-96
NP_001288629 (OMIM: 609917) ERI1 exoribonuclease 3 ( 208) 1374 269.1 5.7e-72
XP_016857791 (OMIM: 609917) PREDICTED: ERI1 exorib ( 208) 1374 269.1 5.7e-72
XP_016857793 (OMIM: 609917) PREDICTED: ERI1 exorib ( 219) 1235 242.9 4.7e-64
XP_006710954 (OMIM: 609917) PREDICTED: ERI1 exorib ( 160) 1126 222.2 6e-58
XP_016857794 (OMIM: 609917) PREDICTED: ERI1 exorib ( 160) 1126 222.2 6e-58
NP_001288630 (OMIM: 609917) ERI1 exoribonuclease 3 ( 160) 1126 222.2 6e-58
XP_011542153 (OMIM: 608739) PREDICTED: 3'-5' exori ( 234) 467 97.8 2.4e-20
XP_016869443 (OMIM: 608739) PREDICTED: 3'-5' exori ( 234) 467 97.8 2.4e-20
XP_016869442 (OMIM: 608739) PREDICTED: 3'-5' exori ( 234) 467 97.8 2.4e-20
XP_016869441 (OMIM: 608739) PREDICTED: 3'-5' exori ( 271) 467 97.9 2.6e-20
XP_011542152 (OMIM: 608739) PREDICTED: 3'-5' exori ( 271) 467 97.9 2.6e-20
XP_005272458 (OMIM: 608739) PREDICTED: 3'-5' exori ( 271) 467 97.9 2.6e-20
NP_699163 (OMIM: 608739) 3'-5' exoribonuclease 1 [ ( 349) 467 98.0 3.2e-20
XP_016869439 (OMIM: 608739) PREDICTED: 3'-5' exori ( 402) 467 98.1 3.5e-20
XP_016869440 (OMIM: 608739) PREDICTED: 3'-5' exori ( 402) 467 98.1 3.5e-20
XP_016869438 (OMIM: 608739) PREDICTED: 3'-5' exori ( 402) 467 98.1 3.5e-20
XP_016869444 (OMIM: 608739) PREDICTED: 3'-5' exori ( 226) 391 83.5 4.8e-16
XP_011542151 (OMIM: 608739) PREDICTED: 3'-5' exori ( 289) 392 83.8 5.1e-16
XP_011542150 (OMIM: 608739) PREDICTED: 3'-5' exori ( 304) 391 83.6 6e-16
>>NP_076971 (OMIM: 609917) ERI1 exoribonuclease 3 isofor (337 aa)
initn: 2391 init1: 2391 opt: 2391 Z-score: 2448.7 bits: 461.5 E(85289): 1.2e-129
Smith-Waterman score: 2391; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KE0 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL
250 260 270 280 290 300
310 320 330
pF1KE0 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
:::::::::::::::::::::::::::::::::::::
NP_076 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
310 320 330
>>XP_016857790 (OMIM: 609917) PREDICTED: ERI1 exoribonuc (335 aa)
initn: 2367 init1: 1842 opt: 2367 Z-score: 2424.2 bits: 456.9 E(85289): 2.7e-128
Smith-Waterman score: 2367; 99.4% identity (99.4% similar) in 337 aa overlap (1-337:1-335)
10 20 30 40 50 60
pF1KE0 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST
:::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGLGIFEVRR--DASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST
70 80 90 100 110
130 140 150 160 170 180
pF1KE0 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE0 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL
240 250 260 270 280 290
310 320 330
pF1KE0 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
:::::::::::::::::::::::::::::::::::::
XP_016 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
300 310 320 330
>>XP_005271243 (OMIM: 609917) PREDICTED: ERI1 exoribonuc (286 aa)
initn: 1967 init1: 1967 opt: 1967 Z-score: 2016.7 bits: 381.3 E(85289): 1.4e-105
Smith-Waterman score: 1967; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KE0 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL
:::::::::::::::::::::::::::::::::::::
XP_005 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKTTARTLPTS
250 260 270 280
310 320 330
pF1KE0 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
>>NP_001288627 (OMIM: 609917) ERI1 exoribonuclease 3 iso (259 aa)
initn: 1798 init1: 1798 opt: 1798 Z-score: 1844.8 bits: 349.3 E(85289): 5.1e-96
Smith-Waterman score: 1798; 100.0% identity (100.0% similar) in 259 aa overlap (79-337:1-259)
50 60 70 80 90 100
pF1KE0 FPALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFS
::::::::::::::::::::::::::::::
NP_001 MLAPLQTGAARFSSYLLSRARKVLGSHLFS
10 20 30
110 120 130 140 150 160
pF1KE0 PCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEF
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWM
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE0 AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPK
160 170 180 190 200 210
290 300 310 320 330
pF1KE0 NGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
220 230 240 250
>>NP_001288628 (OMIM: 609917) ERI1 exoribonuclease 3 iso (259 aa)
initn: 1798 init1: 1798 opt: 1798 Z-score: 1844.8 bits: 349.3 E(85289): 5.1e-96
Smith-Waterman score: 1798; 100.0% identity (100.0% similar) in 259 aa overlap (79-337:1-259)
50 60 70 80 90 100
pF1KE0 FPALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFS
::::::::::::::::::::::::::::::
NP_001 MLAPLQTGAARFSSYLLSRARKVLGSHLFS
10 20 30
110 120 130 140 150 160
pF1KE0 PCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEF
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWM
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE0 AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPK
160 170 180 190 200 210
290 300 310 320 330
pF1KE0 NGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
220 230 240 250
>>XP_016857792 (OMIM: 609917) PREDICTED: ERI1 exoribonuc (259 aa)
initn: 1798 init1: 1798 opt: 1798 Z-score: 1844.8 bits: 349.3 E(85289): 5.1e-96
Smith-Waterman score: 1798; 100.0% identity (100.0% similar) in 259 aa overlap (79-337:1-259)
50 60 70 80 90 100
pF1KE0 FPALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFS
::::::::::::::::::::::::::::::
XP_016 MLAPLQTGAARFSSYLLSRARKVLGSHLFS
10 20 30
110 120 130 140 150 160
pF1KE0 PCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEF
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWM
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE0 AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPK
160 170 180 190 200 210
290 300 310 320 330
pF1KE0 NGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
220 230 240 250
>>NP_001288629 (OMIM: 609917) ERI1 exoribonuclease 3 iso (208 aa)
initn: 1374 init1: 1374 opt: 1374 Z-score: 1413.1 bits: 269.1 E(85289): 5.7e-72
Smith-Waterman score: 1374; 100.0% identity (100.0% similar) in 199 aa overlap (79-277:1-199)
50 60 70 80 90 100
pF1KE0 FPALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFS
::::::::::::::::::::::::::::::
NP_001 MLAPLQTGAARFSSYLLSRARKVLGSHLFS
10 20 30
110 120 130 140 150 160
pF1KE0 PCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEF
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWM
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE0 AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPK
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKTTARTLPTS
160 170 180 190 200
290 300 310 320 330
pF1KE0 NGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
>>XP_016857791 (OMIM: 609917) PREDICTED: ERI1 exoribonuc (208 aa)
initn: 1374 init1: 1374 opt: 1374 Z-score: 1413.1 bits: 269.1 E(85289): 5.7e-72
Smith-Waterman score: 1374; 100.0% identity (100.0% similar) in 199 aa overlap (79-277:1-199)
50 60 70 80 90 100
pF1KE0 FPALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFS
::::::::::::::::::::::::::::::
XP_016 MLAPLQTGAARFSSYLLSRARKVLGSHLFS
10 20 30
110 120 130 140 150 160
pF1KE0 PCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEF
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWM
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE0 AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPK
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKTTARTLPTS
160 170 180 190 200
290 300 310 320 330
pF1KE0 NGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
>>XP_016857793 (OMIM: 609917) PREDICTED: ERI1 exoribonuc (219 aa)
initn: 1232 init1: 1232 opt: 1235 Z-score: 1270.9 bits: 242.9 E(85289): 4.7e-64
Smith-Waterman score: 1331; 65.0% identity (65.0% similar) in 337 aa overlap (1-337:1-219)
10 20 30 40 50 60
pF1KE0 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPG---------------
10 20 30 40
70 80 90 100 110 120
pF1KE0 AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST
XP_016 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE0 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
:::::::::::::::::
XP_016 -------------------------------------------EIIEFPILKLNGRTMEI
50 60
190 200 210 220 230 240
pF1KE0 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
70 80 90 100 110 120
250 260 270 280 290 300
pF1KE0 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL
130 140 150 160 170 180
310 320 330
pF1KE0 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
:::::::::::::::::::::::::::::::::::::
XP_016 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
190 200 210
>>XP_006710954 (OMIM: 609917) PREDICTED: ERI1 exoribonuc (160 aa)
initn: 1126 init1: 1126 opt: 1126 Z-score: 1161.4 bits: 222.2 E(85289): 6e-58
Smith-Waterman score: 1126; 100.0% identity (100.0% similar) in 160 aa overlap (178-337:1-160)
150 160 170 180 190 200
pF1KE0 VLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGII
::::::::::::::::::::::::::::::
XP_006 MEIESTFHMYVQPVVHPQLTPFCTELTGII
10 20 30
210 220 230 240 250 260
pF1KE0 QAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVAD
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE0 YFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRG
100 110 120 130 140 150
330
pF1KE0 FIFKQTSKPF
::::::::::
XP_006 FIFKQTSKPF
160
337 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 17:45:21 2016 done: Thu Nov 3 17:45:22 2016
Total Scan time: 7.700 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]