(Circular) (Six-base) MAPSORT of: pFN21AE0274.seq Check: 6151 from: 1 to: 5032 pFN21AE0274 5032 bp With 182 enzymes: SgfI * October 20, 2009 10:46 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2105 2842 278 Size: 53 83 186 936 569 737 2468 Fragments arranged by size: 2468 936 737 569 186 83 53 AccI GT'mk_AC Cuts at: 1937 2375 1937 Size: 438 4594 Acc65I G'GTAC_C Cuts at: 2353 2353 Size: 5032 AclI AA'CG_TT Cuts at: 1563 3159 3532 1563 Size: 1596 373 3063 Fragments arranged by size: 3063 1596 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3095 4479 4747 1632 Size: 1463 1384 268 1917 Fragments arranged by size: 1917 1463 1384 268 AfeI AGC'GCT Cuts at: 2049 2049 Size: 5032 AflII C'TTAA_G Cuts at: 820 1017 2195 820 Size: 197 1178 3657 Fragments arranged by size: 3657 1178 197 AflIII A'CryG_T Cuts at: 1203 3931 4908 1203 Size: 2728 977 1327 Fragments arranged by size: 2728 1327 977 AgeI A'CCGG_T Cuts at: 3863 3863 Size: 5032 AhdI GACnn_n'nnGTC Cuts at: 3761 3761 Size: 5032 AleI CACnn'nnGTG Cuts at: 1166 2018 1166 Size: 852 4180 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5032 AlwNI CAG_nnn'CTG Cuts at: 2775 4347 2775 Size: 1572 3460 ApaLI G'TGCA_C Cuts at: 3089 4245 3089 Size: 1156 3876 ApoI r'AATT_y Cuts at: 1493 2090 2309 2341 2567 2719 4828 1493 Size: 597 219 32 226 152 2109 1697 Fragments arranged by size: 2109 1697 597 226 219 152 32 AseI AT'TA_AT Cuts at: 160 1032 3586 160 Size: 872 2554 1606 Fragments arranged by size: 2554 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5032 AvaI C'yCGr_G Cuts at: 1870 1943 2357 1870 Size: 73 414 4545 Fragments arranged by size: 4545 414 73 BamHI G'GATC_C Cuts at: 2362 2729 2362 Size: 367 4665 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2225 2353 3808 618 Size: 325 217 627 438 128 1455 1842 Fragments arranged by size: 1842 1455 627 438 325 217 128 BanII G_rGCy'C Cuts at: 1391 2351 1391 Size: 960 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4061 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3223 3257 1903 Size: 34 1286 34 3678 Fragments arranged by size: 3678 1286 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2924 4134 2924 Size: 1210 3822 BclI T'GATC_A Cuts at: 1548 1548 Size: 5032 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3643 136 Size: 107 122 71 631 605 1971 1525 Fragments arranged by size: 1971 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5027 5027 Size: 5032 BlpI GC'TnA_GC Cuts at: 2449 2449 Size: 5032 Bme1580I G_kGCm'C Cuts at: 1790 3093 4249 1790 Size: 1303 1156 2573 Fragments arranged by size: 2573 1303 1156 BmgBI CAC'GTC Cuts at: 1318 2020 1318 Size: 702 4330 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2763 3721 442 Size: 416 53 83 399 24 1346 958 1753 Fragments arranged by size: 1753 1346 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5032 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2036 2192 3692 1239 Size: 797 156 1500 2579 Fragments arranged by size: 2579 1500 797 156 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3157 4022 4320 3157 Size: 865 298 3869 Fragments arranged by size: 3869 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3695 882 Size: 617 2196 2219 Fragments arranged by size: 2219 2196 617 BsaAI yAC'GTr Cuts at: 493 1204 2823 493 Size: 711 1619 2702 Fragments arranged by size: 2702 1619 711 BsaBI GATnn'nnATC Cuts at: 5026 5026 Size: 5032 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2102 2839 3221 3856 Size: 53 83 186 936 569 737 382 635 Cuts at: 3856 275 Size: 1451 Fragments arranged by size: 1451 936 737 635 569 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2148 3465 3863 4137 4284 4695 2148 Size: 1317 398 274 147 411 2485 Fragments arranged by size: 2485 1317 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4807 Fragments arranged by size: 4807 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5032 BseYI C'CCAG_C Cuts at: 4235 4731 4235 Size: 496 4536 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4459 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2482 3243 4271 1540 Size: 275 186 481 761 1028 2301 Fragments arranged by size: 2301 1028 761 481 275 186 BsiHKAI G_wGCw'C Cuts at: 2025 3093 3178 4249 2025 Size: 1068 85 1071 2808 Fragments arranged by size: 2808 1071 1068 85 BsmI GAATG_Cn' Cuts at: 2063 2326 2543 2636 2063 Size: 263 217 93 4459 Fragments arranged by size: 4459 263 217 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2025 2351 3093 3178 4249 1391 Size: 399 235 326 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 326 235 85 BspEI T'CCGG_A Cuts at: 4695 4695 Size: 5032 BspHI T'CATG_A Cuts at: 2921 4651 2921 Size: 1730 3302 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2387 844 Size: 1543 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2172 2919 1394 Size: 429 349 747 3507 Fragments arranged by size: 3507 747 429 349 BsrDI GCAATG_nn' Cuts at: 65 1248 2037 3527 3701 65 Size: 1183 789 1490 174 1396 Fragments arranged by size: 1490 1396 1183 789 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3676 3863 1700 Size: 110 1866 187 2869 Fragments arranged by size: 2869 1866 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5032 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5032 BssSI C'ACGA_G Cuts at: 3092 4104 3092 Size: 1012 4020 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5032 BstBI TT'CG_AA Cuts at: 3836 3836 Size: 5032 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5032 BstYI r'GATC_y Cuts at: 1972 2362 2729 3114 3131 4583 4669 4681 5027 Size: 390 367 385 17 1452 86 12 346 Cuts at: 5027 1972 Size: 1977 Fragments arranged by size: 1977 1452 390 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4480 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4293 Fragments arranged by size: 4293 683 56 BtsI GCAGTG_nn' Cuts at: 2548 3342 3362 2548 Size: 794 20 4218 Fragments arranged by size: 4218 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5032 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 4997 DraI TTT'AAA Cuts at: 2336 2336 Size: 5032 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4039 809 Size: 507 2723 1802 Fragments arranged by size: 2723 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2479 3368 4997 Size: 54 1425 50 275 18 649 889 1629 Cuts at: 4997 8 Size: 43 Fragments arranged by size: 1629 1425 889 649 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2479 1537 Size: 275 667 4090 Fragments arranged by size: 4090 667 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2184 2962 1353 Size: 831 778 3423 Fragments arranged by size: 3423 831 778 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2288 3619 3993 4139 387 Size: 1064 138 699 1331 374 146 1280 Fragments arranged by size: 1331 1280 1064 699 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2036 2192 3095 3692 4479 4747 1239 Size: 393 404 156 903 597 787 268 1524 Fragments arranged by size: 1524 903 787 597 404 393 268 156 EcoRI G'AATT_C Cuts at: 2309 2341 2719 2309 Size: 32 378 4622 Fragments arranged by size: 4622 378 32 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2210 2210 Size: 5032 FspI TGC'GCA Cuts at: 3538 3538 Size: 5032 HaeII r_GCGC'y Cuts at: 1678 2051 4179 1678 Size: 373 2128 2531 Fragments arranged by size: 2531 2128 373 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2161 2193 3673 3705 3747 Size: 32 135 32 589 32 1480 32 42 Cuts at: 3747 3779 1373 Size: 32 2626 Fragments arranged by size: 2626 1480 589 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2376 2622 669 Size: 988 281 438 246 3079 Fragments arranged by size: 3079 988 438 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5032 HpaI GTT'AAC Cuts at: 2622 2622 Size: 5032 KpnI G_GTAC'C Cuts at: 2357 2357 Size: 5032 MfeI C'AATT_G Cuts at: 2631 2631 Size: 5032 MluI A'CGCG_T Cuts at: 4908 4908 Size: 5032 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4146 4330 1305 Size: 2841 184 2007 Fragments arranged by size: 2841 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3210 Fragments arranged by size: 3210 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2018 2990 3349 3508 518 Size: 648 852 972 359 159 2042 Fragments arranged by size: 2042 972 852 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2448 3125 4273 4518 1606 Size: 842 677 1148 245 2120 Fragments arranged by size: 2120 1148 842 677 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4480 NdeI CA'TA_TG Cuts at: 387 387 Size: 5032 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5032 NotI GC'GGCC_GC Cuts at: 2479 2479 Size: 5032 NspI r_CATG'y Cuts at: 1132 1229 2390 3935 1132 Size: 97 1161 1545 2229 Fragments arranged by size: 2229 1545 1161 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5032 PciI A'CATG_T Cuts at: 3931 3931 Size: 5032 PflMI CCAn_nnn'nTGG Cuts at: 1108 2320 1108 Size: 1212 3820 PfoI T'CCnGG_A Cuts at: 2052 2313 2052 Size: 261 4771 PmeI GTTT'AAAC Cuts at: 2336 2336 Size: 5032 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3101 3133 4614 4646 3101 Size: 32 1481 32 3487 Fragments arranged by size: 3487 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5032 PsiI TTA'TAA Cuts at: 2602 2602 Size: 5032 PstI C_TGCA'G Cuts at: 830 2384 830 Size: 1554 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5032 SalI G'TCGA_C Cuts at: 1936 2374 1936 Size: 438 4594 SapI GCTCTTCn'nnn_ Cuts at: 2184 2184 Size: 5032 SbfI CC_TGCA'GG Cuts at: 2384 2384 Size: 5032 ScaI AGT'ACT Cuts at: 3280 4992 3280 Size: 1712 3320 SfcI C'TryA_G Cuts at: 826 1045 2380 3515 4196 4387 826 Size: 219 1335 1135 681 191 1471 Fragments arranged by size: 1471 1335 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5032 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5032 SmaI CCC'GGG Cuts at: 1872 2359 1872 Size: 487 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2195 3136 4037 4299 820 Size: 197 926 252 941 901 262 1553 Fragments arranged by size: 1553 941 926 901 262 252 197 SnaBI TAC'GTA Cuts at: 493 2823 493 Size: 2330 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5032 SphI G_CATG'C Cuts at: 1132 2390 1132 Size: 1258 3774 SspI AAT'ATT Cuts at: 5 52 2956 5 Size: 47 2904 2081 Fragments arranged by size: 2904 2081 47 StuI AGG'CCT Cuts at: 1517 2109 1517 Size: 592 4440 StyI C'CwwG_G Cuts at: 513 1065 2471 513 Size: 552 1406 3074 Fragments arranged by size: 3074 1406 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2255 3059 3076 3229 3414 3859 325 Size: 1255 675 804 17 153 185 445 1498 Fragments arranged by size: 1498 1255 804 675 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3278 4990 96 Size: 274 80 33 51 1443 1301 1712 138 Fragments arranged by size: 1712 1443 1301 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 4992 5024 4992 Size: 32 5000 Tth111I GACn'n_nGTC Cuts at: 1316 2242 1316 Size: 926 4106 XbaI T'CTAG_A Cuts at: 2368 2368 Size: 5032 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2260 2260 Size: 5032 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5032 XmaI C'CCGG_G Cuts at: 1870 2357 1870 Size: 487 4545 XmnI GAAnn'nnTTC Cuts at: 3161 3161 Size: 5032 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2103 2840 276 Size: 53 83 186 936 569 737 2468 Fragments arranged by size: 2468 936 737 569 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PstI PvuI SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SexAI SfiI SfoI SrfI SwaI