FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0247, 617 aa
  1>>>pF1KE0247 617 - 617 aa - 617 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4498+/-0.000893; mu= 9.6406+/- 0.054
 mean_var=110.4619+/-22.367, 0's: 0 Z-trim(109.6): 13  B-trim: 136 in 2/49
 Lambda= 0.122030
 statistics sampled from 10985 (10988) to 10985 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.338), width:  16
 Scan time:  3.480

The best scores are:                                      opt bits E(32554)
CCDS161.1 RSC1A1 gene_id:6248|Hs108|chr1           ( 617) 4019 718.4  7e-207


>>CCDS161.1 RSC1A1 gene_id:6248|Hs108|chr1                (617 aa)
 initn: 4019 init1: 4019 opt: 4019  Z-score: 3827.7  bits: 718.4 E(32554): 7e-207
Smith-Waterman score: 4019; 100.0% identity (100.0% similar) in 617 aa overlap (1-617:1-617)

               10        20        30        40        50        60
pF1KE0 MSSLPTSDGFNHPARSSGQSPDVGNPMSLARSVSASVCPIKPSDSDRIEPKAVKALKASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MSSLPTSDGFNHPARSSGQSPDVGNPMSLARSVSASVCPIKPSDSDRIEPKAVKALKASA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EFQLNSEKKEHLSLQDLSDHASSADHAPTDQSPAMPMQNSSEEITVAGNLEKSAERSTQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EFQLNSEKKEHLSLQDLSDHASSADHAPTDQSPAMPMQNSSEEITVAGNLEKSAERSTQG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LKFHLHTRQEASLSVTSTRMHEPQMFLGEKDWHPENQNLSQVSDPQQHEEPGNEQYEVAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LKFHLHTRQEASLSVTSTRMHEPQMFLGEKDWHPENQNLSQVSDPQQHEEPGNEQYEVAQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QKASHDQEYLCNIGDLELPEERQQNQHKIVDLEATMKGNGLPQNVDPPSAKKSIPSSECS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QKASHDQEYLCNIGDLELPEERQQNQHKIVDLEATMKGNGLPQNVDPPSAKKSIPSSECS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GCSNSETFMEIDTAQQSLVTLLNSTGRQNANVKNIGALDLTLDNPLMEVETSKCNPSSEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GCSNSETFMEIDTAQQSLVTLLNSTGRQNANVKNIGALDLTLDNPLMEVETSKCNPSSEI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LNDSISTQDLQPPETNVEIPGTNKEYGHYSSPSLCGSCQPSVESAEESCPSITAALKELH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LNDSISTQDLQPPETNVEIPGTNKEYGHYSSPSLCGSCQPSVESAEESCPSITAALKELH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 ELLVVSSKPASENTSEEVICQSETIAEGQTSIKDLSERWTQNEHLTQNEQCPQVSFHQAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ELLVVSSKPASENTSEEVICQSETIAEGQTSIKDLSERWTQNEHLTQNEQCPQVSFHQAI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 SVSVETEKLTGTSSDTGREAVENVNFRSLGDGLSTDKEGVPKSRESINKNRSVTVTSAKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SVSVETEKLTGTSSDTGREAVENVNFRSLGDGLSTDKEGVPKSRESINKNRSVTVTSAKT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 SNQLHCTLGVEISPKLLAGEEDALNQTSEQTKSLSSNFILVKDLGQGIQNSVTDRPETRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SNQLHCTLGVEISPKLLAGEEDALNQTSEQTKSLSSNFILVKDLGQGIQNSVTDRPETRE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 NVCPDASRPLLEYEPPTSHPSSSPAILPPLIFPATDIDRILRAGFTLQEALGALHRVGGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NVCPDASRPLLEYEPPTSHPSSSPAILPPLIFPATDIDRILRAGFTLQEALGALHRVGGN
              550       560       570       580       590       600

              610       
pF1KE0 ADLALLVLLAKNIVVPT
       :::::::::::::::::
CCDS16 ADLALLVLLAKNIVVPT
              610       




617 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:19:47 2016 done: Thu Nov  3 19:19:48 2016
 Total Scan time:  3.480 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]