FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1859, 379 aa
  1>>>pF1KE1859 379 - 379 aa - 379 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2247+/-0.000314; mu= 5.9772+/- 0.020
 mean_var=182.8417+/-37.883, 0's: 0 Z-trim(122.2): 3  B-trim: 2250 in 1/56
 Lambda= 0.094850
 statistics sampled from 40040 (40043) to 40040 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.469), width:  16
 Scan time:  4.920

The best scores are:                                      opt bits E(85289)
NP_002018 (OMIM: 134635) protein farnesyltransfera ( 379) 2596 366.8 4.7e-101


>>NP_002018 (OMIM: 134635) protein farnesyltransferase/g  (379 aa)
 initn: 2596 init1: 2596 opt: 2596  Z-score: 1935.2  bits: 366.8 E(85289): 4.7e-101
Smith-Waterman score: 2596; 100.0% identity (100.0% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KE1 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG
              310       320       330       340       350       360

              370         
pF1KE1 RSLQSKHSTENDSPTNVQQ
       :::::::::::::::::::
NP_002 RSLQSKHSTENDSPTNVQQ
              370         




379 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:29:31 2016 done: Sun Nov  6 21:29:32 2016
 Total Scan time:  4.920 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]