FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1726, 236 aa
  1>>>pF1KE1726 236 - 236 aa - 236 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3841+/-0.000865; mu= -4.7886+/- 0.053
 mean_var=315.5580+/-63.467, 0's: 0 Z-trim(117.5): 2  B-trim: 0 in 0/54
 Lambda= 0.072200
 statistics sampled from 18228 (18229) to 18228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.56), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS34245.1 SRA1 gene_id:10011|Hs108|chr5          ( 236) 1607 179.4 1.8e-45


>>CCDS34245.1 SRA1 gene_id:10011|Hs108|chr5               (236 aa)
 initn: 1607 init1: 1607 opt: 1607  Z-score: 929.9  bits: 179.4 E(32554): 1.8e-45
Smith-Waterman score: 1607; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)

               10        20        30        40        50        60
pF1KE1 MTRCPAGQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MTRCPAGQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPLEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ALEDCRGHTRKQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSSHRWDAADDIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ALEDCRGHTRKQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSSHRWDAADDIH
              130       140       150       160       170       180

              190       200       210       220       230      
pF1KE1 RSLMVDHVTEVSQWMVGVKRLIAEKRSLFSEEAANEEKSAATAEKNHTIPGFQQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RSLMVDHVTEVSQWMVGVKRLIAEKRSLFSEEAANEEKSAATAEKNHTIPGFQQAS
              190       200       210       220       230      




236 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:31:19 2016 done: Sun Nov  6 21:31:20 2016
 Total Scan time:  2.810 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]